S. Shadden

发表

Definition and properties of Lagrangian coherent structures from finite-time Lyapunov exponents in two-dimensional aperiodic flows

J. Marsden, S. Shadden, F. Lekien, 2005 .

Effect of exercise on patient specific abdominal aortic aneurysm flow topology and mixing

S. Shadden, Amirhossein Arzani, A. Les, 2014, International journal for numerical methods in biomedical engineering.

Characterization of the transport topology in patient-specific abdominal aortic aneurysm models.

S. Shadden, Amirhossein Arzani, 2012, Physics of fluids.

Lagrangian wall shear stress structures and near-wall transport in high-Schmidt-number aneurysmal flows

S. Shadden, Guoning Chen, Amirhossein Arzani, 2016, Journal of Fluid Mechanics.

Wall shear stress fixed points in cardiovascular fluid mechanics.

S. Shadden, Amirhossein Arzani, 2018, Journal of biomechanics.

Lagrangian coherent structures in n-dimensional systems

Jerrold E. Marsden, Shawn C. Shadden, Francois Lekien, 2007 .

Lagrangian analysis of fluid transport in empirical vortex ring flows

J. Marsden, J. Dabiri, S. Shadden, 2006 .

Variability of computational fluid dynamics solutions for pressure and flow in a giant aneurysm: the ASME 2012 Summer Bioengineering Conference CFD Challenge.

Prahlad G. Menon, Damiaan F. Habets, J. A. Costelloe, 2013, Journal of biomechanical engineering.

A Coupled Lumped-Parameter and Distributed Network Model for Cerebral Pulse-Wave Hemodynamics.

Xiao Hu, S. Shadden, Jaiyoung Ryu, 2015, Journal of biomechanical engineering.

The Role Of Circle Of Willis Anatomy Variations In Cardio-embolic Stroke - A Patient-specific Simulation Based Study

S. Shadden, J. Narvid, D. Mukherjee, 2017, bioRxiv.

Quantification of Hemodynamics in Abdominal Aortic Aneurysms During Rest and Exercise Using Magnetic Resonance Imaging and Computational Fluid Dynamics

Charles A. Taylor, Jinha M. Park, C. A. Figueroa, 2010, Annals of Biomedical Engineering.

Size-dependent predilections of cardiogenic embolic transport.

S. Shadden, R. Schwartz, Ian A. Carr, 2013, American journal of physiology. Heart and circulatory physiology.

Computational Assessment of the Relation Between Embolism Source and Embolus Distribution to the Circle of Willis for Improved Understanding of Stroke Etiology.

S. Shadden, D. Mukherjee, N. Jani, 2016, Journal of biomechanical engineering.

Numerical investigation of fluid–particle interactions for embolic stroke

S. Shadden, D. Mukherjee, J. Padilla, 2016 .

Inertial particle dynamics in large artery flows - Implications for modeling arterial embolisms.

S. Shadden, D. Mukherjee, 2017, Journal of biomechanics.

Lagrangian Postprocessing of Computational Hemodynamics

S. Shadden, Amirhossein Arzani, 2014, Annals of Biomedical Engineering.

Image-based modeling of hemodynamics in coronary artery aneurysms caused by Kawasaki disease

A. Marsden, S. Shadden, Sethuraman Sankaran, 2011, Biomechanics and Modeling in Mechanobiology.

The Role of Circle of Willis Anatomy Variations in Cardio-embolic Stroke: A Patient-Specific Simulation Based Study

S. Shadden, J. Narvid, D. Mukherjee, 2017, Annals of Biomedical Engineering.

Construction of analysis suitable vascular models using axis-aligned polycubes.

S. Shadden, Adam Updegrove, N. Wilson, 2019, Journal of biomechanical engineering.

Aerosol transport throughout inspiration and expiration in the pulmonary airways

C. Grandmont, I. Vignon-Clementel, S. Shadden, 2017, International journal for numerical methods in biomedical engineering.

A Distributed Lumped Parameter Model of Blood Flow

S. Shadden, M. Mirramezani, Mehran Mirramezani, 2020, Annals of Biomedical Engineering.

Lagrangian analysis of hemodynamics data from FSI simulation

A. Marsden, S. Shadden, Vincent Duvernois, 2013, International journal for numerical methods in biomedical engineering.

Variability of CFD Solutions for Pressure and Flow in a Giant Aneurysm : The SBC 2012 CFD Challenge

J. A. Costelloe, G. Janiga, S. Shadden, 2012 .

In Vivo Validation of Numerical Prediction for Turbulence Intensity in an Aortic Coarctation

T. Ebbers, S. Shadden, P. Dyverfeldt, 2011, Annals of Biomedical Engineering.

Quantification of Particle Residence Time in Abdominal Aortic Aneurysms Using Magnetic Resonance Imaging and Computational Fluid Dynamics

Christopher P. Cheng, Charles A. Taylor, Ryan L. Spilker, 2011, Annals of Biomedical Engineering.

Characterization of Coherent Structures in the Cardiovascular System

Charles A. Taylor, S. Shadden, 2008, Annals of Biomedical Engineering.

Evaluation of a novel Y-shaped extracardiac Fontan baffle using computational fluid dynamics.

Charles A. Taylor, Ryan L. Spilker, A. Marsden, 2009, The Journal of thoracic and cardiovascular surgery.

Characterizations and Correlations of Wall Shear Stress in Aneurysmal Flow.

S. Shadden, Amirhossein Arzani, 2016, Journal of biomechanical engineering.

Lagrangian Coherent Structures

Shawn C. Shadden, S. Shadden, 2011 .

Mechanical platelet activation potential in abdominal aortic aneurysms.

Kirk B Hansen, Shawn C Shadden, Amirhossein Arzani, 2015, Journal of biomechanical engineering.

Computational analysis of an aortic valve jet with Lagrangian coherent structures.

Matteo Astorino, Jean-Frédéric Gerbeau, Shawn C Shadden, 2010, Chaos.

Reduced order models for transstenotic pressure drop in the coronary arteries.

S. Diamond, S. Shadden, H. Litt, 2019, Journal of biomechanical engineering.

A dynamical systems approach to unsteady systems

S. Shadden, Shawn Christopher Shadden, 2006 .

Including aortic valve morphology in computational fluid dynamics simulations: initial findings and application to aortic coarctation.

John F LaDisa, Shawn C Shadden, Laura M Ellwein, 2013, Medical engineering & physics.

Reconstructing vascular homeostasis by growth-based prestretch and optimal fiber deposition.

Christoph M. Augustin, S. Shadden, Jiacheng Wu, 2020, Journal of the mechanical behavior of biomedical materials.

Coupled Simulation of Hemodynamics and Vascular Growth and Remodeling in a Subject-Specific Geometry

S. Shadden, Jiacheng Wu, 2015, Annals of Biomedical Engineering.

A new multiparameter approach to computational simulation for Fontan assessment and redesign.

Charles A. Taylor, A. Marsden, J. Feinstein, 2010, Congenital heart disease.

Fluid Mechanics of Mixing in the Vertebrobasilar System: Comparison of Simulation and MRI

Alison L. Marsden, Shawn C. Shadden, Eric C. Wong, 2012, Cardiovascular Engineering and Technology.

Hemodynamic Changes Quantified in Abdominal Aortic Aneurysms with Increasing Exercise Intensity Using MR Exercise Imaging and Image-Based Computational Fluid Dynamics

Christopher P. Cheng, Charles A. Taylor, Ryan L. Spilker, 2011, Annals of Biomedical Engineering.

Lagrangian Coherent Structures

S. Shadden, 2011 .

Airflow Simulations in Infant, Child, and Adult Pulmonary Conducting Airways

S. Shadden, J. Oakes, S. Roth, 2017, Annals of Biomedical Engineering.

Cardiac Kinetic Energy and Viscous Dissipation Rate From Radial Flow Data

T. Ebbers, S. Shadden, Jonas Lantz, 2021, Frontiers in Physiology.

Improving the Convergence of the Iterative Ensemble Kalman Filter by Resampling

Jian-Xun Wang, S. Shadden, Jiacheng Wu, 2019, 1910.04247.

Numerical models for assessing the risk of leaflet thrombosis post-transcatheter aortic valve-in-valve implantation

S. Shadden, G. Marom, R. Plitman Mayo, 2020, Royal Society Open Science.

Adding Constraints to Bayesian Inverse Problems

Jian-Xun Wang, Shawn C. Shadden, Jiacheng Wu, 2018, AAAI.

Lagrangian wall shear stress structures and near-wall transport in high-Schmidt-number aneurysmal flows

S. Shadden, Guoning Chen, Amirhossein Arzani, 2016, Journal of Fluid Mechanics.

Clinical assessment of intraventricular blood transport in patients undergoing cardiac resynchronization therapy

F. Fernández‐Avilés, S. Shadden, J. Bermejo, 2016, Meccanica.

Noise Estimation in Gaussian Process Regression

S. Shadden, S. Ameli, 2022, ArXiv.

A Singular Woodbury and Pseudo-Determinant Matrix Identities and Application to Gaussian Process Regression

S. Shadden, S. Ameli, 2022, ArXiv.

Stability analysis of a continuum-based constrained mixture model for vascular growth and remodeling

S. Shadden, Jiacheng Wu, 2016, Biomechanics and modeling in mechanobiology.

Noise Estimation in Gaussian Process Regression

S. Shadden, S. Ameli, 2022, ArXiv.

Distributed lumped parameter modeling of blood flow in compliant vessels.

S. Shadden, M. Mirramezani, Mehran Mirramezani, 2022, Journal of biomechanics.

Interpolating log-determinant and trace of the powers of matrix \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\textb

S. Shadden, S. Ameli, 2022, Statistics and Computing.

Computational investigation of blood flow and flow-mediated transport in arterial thrombus neighborhood

S. Shadden, D. Mukherjee, Chayut Teeraratkul, 2021, Biomechanics and Modeling in Mechanobiology.

Modeling blood flow around a thrombus using a hybrid particle–continuum approach

S. Shadden, D. Mukherjee, 2017, Biomechanics and Modeling in Mechanobiology.

A reduced-dimensional model for near-wall transport in cardiovascular flows

Kirk B Hansen, S. Shadden, 2015, Biomechanics and Modeling in Mechanobiology.

Clinical assessment of intraventricular blood transport in patients undergoing cardiac resynchronization therapy

F. Fernández‐Avilés, S. Shadden, J. Bermejo, 2016, Meccanica.

In Vivo Validation of Numerical Prediction for Turbulence Intensity in an Aortic Coarctation

T. Ebbers, S. Shadden, P. Dyverfeldt, 2012, Annals of Biomedical Engineering.

Hierarchical Watershed Ridges for Visualizing Lagrangian Coherent Structures

J. Hart, Mingcheng Chen, S. Shadden, 2015 .

A Generalizable Deep-Learning Approach for Cardiac Magnetic Resonance Image Segmentation Using Image Augmentation and Attention U-Net

S. Shadden, Fanwei Kong, 2020, M&Ms and EMIDEC/STACOM@MICCAI.

Platelet packing density is an independent regulator of the hemostatic response to injury

S. Diamond, J. Weisel, S. Shadden, 2018, Journal of thrombosis and haemostasis : JTH.

Data-Augmented Modeling of Intracranial Pressure

Xiao Hu, Jian-Xun Wang, Shawn C Shadden, 2018, Annals of Biomedical Engineering.

Development of an Efficient and Flexible Pipeline for Lagrangian Coherent Structure Computation

Shawn C. Shadden, Siavash Ameli, Yogin Desai, 2022, Topological Methods in Data Analysis and Visualization.

A longitudinal comparison of hemodynamics and intraluminal thrombus deposition in abdominal aortic aneurysms.

Shawn C Shadden, Amirhossein Arzani, Ga-Young Suh, 2014, American journal of physiology. Heart and circulatory physiology.

SimVascular: An Open Source Pipeline for Cardiovascular Simulation

Alison L. Marsden, Shawn C. Shadden, Nathan M. Wilson, 2017, Annals of Biomedical Engineering.

S. Shadden, S. Ameli, 2020, Statistics and Computing.

A whole lung in silico model to estimate age dependent particle dosimetry

I. Vignon-Clementel, S. Shadden, J. Oakes, 2021, Scientific Reports.

Interpolating the Trace of the Inverse of Matrix $\mathbf{A} + t \mathbf{B}$

Shawn C. Shadden, Siavash Ameli, S. Shadden, 2020 .

Interpolating the Trace of the Inverse of Matrix A + tB pdf

Shawn C. Shadden, Siavash Ameli, S. Shadden, 2020, ArXiv.

svFSI: A Multiphysics Package for Integrated Cardiac Modeling

A. Marsden, S. Shadden, Chi Zhu, 2022, J. Open Source Softw..

A reduced-dimensional model for near-wall transport in cardiovascular flows

Kirk B Hansen, S. Shadden, 2016, Biomechanics and modeling in mechanobiology.

Study of blood flow impact on growth of thrombi using a multiscale model

Jerrold E. Marsden, Shawn C. Shadden, Elliot D. Rosen, 2009 .

Learning Whole Heart Mesh Generation From Patient Images for Computational Simulations

S. Shadden, Fanwei Kong, 2022, IEEE Transactions on Medical Imaging.

Automating Model Generation for Imagebased Cardiac Flow Simulation.

Shawn C Shadden, Fanwei Kong, S. Shadden, 2020, Journal of biomechanical engineering.

Image-based modeling of hemodynamics in coronary artery aneurysms caused by Kawasaki disease

A. Marsden, S. Shadden, Sethuraman Sankaran, 2012, Biomechanics and modeling in mechanobiology.

Automated reduction of blood coagulation models

Kirk B Hansen, Shawn C Shadden, S. Shadden, 2019, International journal for numerical methods in biomedical engineering.

A Re-Engineered Software Interface and Workflow for the Open-Source SimVascular Cardiovascular Modeling Package.

Shawn C Shadden, Alison L Marsden, Adam Updegrove, 2018, Journal of biomechanical engineering.

Transport and stirring induced by vortex formation

Jerrold E. Marsden, Shawn C. Shadden, John O. Dabiri, 2007, Journal of Fluid Mechanics.

Airflow and Particle Deposition Simulations in Health and Emphysema: From In Vivo to In Silico Animal Experiments

Alison L. Marsden, Shawn C. Shadden, Irene E. Vignon-Clementel, 2014, Annals of Biomedical Engineering.

Coherent structures and the saturation of a nonlinear dynamo

S. Shadden, A. Brandenburg, A. Chian, 2012, Journal of Fluid Mechanics.

Potential fluid mechanic pathways of platelet activation

Shawn C. Shadden, Sahar Hendabadi, S. Shadden, 2012, Biomechanics and Modeling in Mechanobiology.

New Insights into Pacemaker Lead-Induced Venous Occlusion: Simulation-Based Investigation of Alterations in Venous Biomechanics

Shawn C Shadden, Charles A. Taylor, Charles A Taylor, 2010, Cardiovascular engineering.

A robust and efficient valve model based on resistive immersed surfaces

Matteo Astorino, Jean-Frédéric Gerbeau, Shawn C Shadden, 2012, International journal for numerical methods in biomedical engineering.

Machine Learning for Cardiovascular Biomechanics Modeling: Challenges and Beyond

Jian-Xun Wang, S. Shadden, M. Sacks, 2022, Annals of Biomedical Engineering.

Quantifying the effects of intraluminal thrombi and their poroelastic properties on abdominal aortic aneurysms

S. Shadden, M. Bukač, 2021, Archive of Applied Mechanics.

A Rapid and Computationally Inexpensive Method to Virtually Implant Current and Next-Generation Stents into Subject-Specific Computational Fluid Dynamics Models

Shawn C. Shadden, Andrew R. Williams, Jeffrey A. Feinstein, 2011, Annals of Biomedical Engineering.

Optimization of a Y-graft design for improved hepatic flow distribution in the fontan circulation.

Shawn C Shadden, Alison L Marsden, Weiguang Yang, 2013, Journal of biomechanical engineering.

Impact of BASILICA on the thrombogenicity potential of valve-in-valve implantations.

S. Shadden, G. Marom, R. Plitman Mayo, 2021, Journal of biomechanics.

The correlation between surface drifters and coherent structures based on high-frequency radar data in Monterey Bay

Jerrold E. Marsden, Shawn C. Shadden, Francois Lekien, 2009 .

Numerical investigation of fluid–particle interactions for embolic stroke

S. Shadden, D. Mukherjee, J. Padilla, 2015, Theoretical and Computational Fluid Dynamics.

Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Segmentation: The M&Ms Challenge

Sergio Escalera, Mitko Veta, Xiahai Zhuang, 2021, IEEE Transactions on Medical Imaging.

A whole lung in silico model to estimate age dependent particle dosimetry

I. Vignon-Clementel, S. Shadden, J. Oakes, 2021, Scientific Reports.

Airflow Simulations in Infant, Child, and Adult Pulmonary Conducting Airways

S. Shadden, J. Oakes, S. Roth, 2017, Annals of Biomedical Engineering.

Topology of Blood Transport in the Human Left Ventricle by Novel Processing of Doppler Echocardiography

F. Fernández‐Avilés, S. Shadden, J. Bermejo, 2013, Annals of Biomedical Engineering.

Finite element modeling of near‐wall mass transport in cardiovascular flows

Kirk B Hansen, S. Shadden, Amirhossein Arzani, 2018, International journal for numerical methods in biomedical engineering.

Real-World Variability in the Prediction of Intracranial Aneurysm Wall Shear Stress: The 2015 International Aneurysm CFD Challenge

David A Steinman, Philipp Berg, Sabine Roller, 2018, Cardiovascular engineering and technology.

A Transport Method for Restoring Incomplete Ocean Current Measurements

Shawn C. Shadden, Siavash Ameli, S. Shadden, 2018, Journal of Geophysical Research: Oceans.

Numerical Investigation of Vasospasm Detection by Extracranial Blood Velocity Ratios

S. Shadden, N. Ko, Jaiyoung Ryu, 2017, Cerebrovascular Diseases.

A Deep-Learning Approach For Direct Whole-Heart Mesh Reconstruction

Shawn C. Shadden, Fanwei Kong, Nathan Wilson, 2021, Medical Image Anal..

Modeling blood flow around a thrombus using a hybrid particle–continuum approach

S. Shadden, D. Mukherjee, 2018, Biomechanics and modeling in mechanobiology.

Computational investigation of blood flow and flow-mediated transport in arterial thrombus neighborhood

Shawn C. Shadden, Chayut Teeraratkul, Zachariah Irwin, 2020, bioRxiv.

Wall shear stress exposure time: a Lagrangian measure of near-wall stagnation and concentration in cardiovascular flows

S. Shadden, Guoning Chen, Amirhossein Arzani, 2017, Biomechanics and modeling in mechanobiology.

DETECTION OF COHERENT STRUCTURES IN PHOTOSPHERIC TURBULENT FLOWS

S. Shadden, B. Schmieder, G. Aulanier, 2013, 1312.2405.

Fluid Mechanics of Mixing in the Vertebrobasilar System: Comparison of Simulation and MRI

E. Wong, A. Marsden, S. Shadden, 2012 .

A Singular Woodbury and Pseudo-Determinant Matrix Identities and Application to Gaussian Process Regression

S. Shadden, S. Ameli, 2022, Appl. Math. Comput..

Potential fluid mechanic pathways of platelet activation

S. Shadden, Sahar Hendabadi, 2013, Biomechanics and modeling in mechanobiology.

Coupled Simulation of Hemodynamics and Vascular Growth and Remodeling in a Subject-Specific Geometry

S. Shadden, Jiacheng Wu, 2015, Annals of Biomedical Engineering.

Novel measurement tool and model for aberrant urinary stream in 3D printed urethras derived from human tissue

S. Shadden, B. Breyer, L. Baskin, 2020, PloS one.

FEniCS Mechanics: A Package for Continuum Mechanics Simulations

Shawn C. Shadden, Miguel A. Rodriguez, Christoph M. Augustin, 2019, SoftwareX.

Fast Coherent Particle Advection through Time-Varying Unstructured Flow Datasets

John C. Hart, Shawn C. Shadden, Mingcheng Chen, 2016, IEEE Transactions on Visualization and Computer Graphics.

Hemodynamic Changes Quantified in Abdominal Aortic Aneurysms with Increasing Exercise Intensity Using MR Exercise Imaging and Image-Based Computational Fluid Dynamics

Christopher P. Cheng, Charles A. Taylor, Ryan L. Spilker, 2011, Annals of Biomedical Engineering.

A Rapid and Computationally Inexpensive Method to Virtually Implant Current and Next-Generation Stents into Subject-Specific Computational Fluid Dynamics Models

Timothy J. Gundert, J. Feinstein, S. Shadden, 2011, Annals of Biomedical Engineering.

Collision avoidance for multiple agent systems

R. Olfati-Saber, D.E. Chang, S.C. Shadden, 2003, 42nd IEEE International Conference on Decision and Control (IEEE Cat. No.03CH37475).

Author ' s personal copy The correlation between surface drifters and coherent structures based on high-frequency radar data in Monterey Bay

J. Marsden, F. Chavez, J. Paduan, 2009 .

Optimal trajectory generation in ocean flows

S.C. Shadden, J.E. Marsden, T. Inanc, 2005, Proceedings of the 2005, American Control Conference, 2005..