Arzucan Özgür

发表

Introducing meta-services for biomedical information extraction

Chris Sander, Alfonso Valencia, Dragomir R. Radev, 2008, Genome Biology.

Extracting Interacting Protein Pairs and Evidence Sentences by using Dependency Parsing and Machine Learning Techniques

Dragomir R. Radev, Arzucan Özgür, Günes Erkan, 2007 .

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID

André L. M. Santos, Yifan Peng, Sophia Ananiadou, 2016, Database J. Biol. Databases Curation.

Literature Mining and Ontology based Analysis of Host-Brucella Gene–Gene Interaction Network

Yongqun He, Junguk Hur, Arzucan Özgür, 2015, Frontiers in microbiology.

A review on computational systems biology of pathogen–host interactions

Reinhard Guthke, Arzucan Özgür, Saliha Durmuş, 2015, Front. Microbiol..

Literature-Based Discovery of IFN-γ and Vaccine-Mediated Gene Interaction Networks

Dragomir R. Radev, Yongqun He, Zuoshuang Xiang, 2010, Journal of biomedicine & biotechnology.

CNN-based Chemical-Protein Interactions Classification

Arzucan Özgür, Elif Ozkirimli, Atakan Yüksel, 2017 .

Identifying Topics in Microblogs Using Wikipedia

Arzucan Özgür, Ahmet Yıldırım, Suzan Üsküdarli, 2016, PloS one.

Retrieving Passages Describing Experimental Methods using Ontology and Term Relevance based Query Matching

Zehra Melce Hüsünbeyi, Arzucan Özgür, F. Aydın, 2015 .

Classification of Beta-Lactamases and Penicillin Binding Proteins Using Ligand-Centric Network Models

Arzucan Özgür, Elif Ozkirimli, Hakime Öztürk, 2015, PloS one.

Dependency Parsing and Machine Learning for Protein Interactions 1 Extracting Interacting Protein Pairs and Evidence Sentences by using Dependency Parsing and Machine Learning Techniques

Dragomir R. Radev, Arzucan Özgür, Günes Erkan, 2007 .

Probabilistic Latent Tensor Factorization for 3-way Microarray Data Analysis with Missing Values

Yunus Emre Kara, A. Cemgil, Umut Simsekli, 2012 .

Resources for Turkish dependency parsing: introducing the BOUN Treebank and the BoAT annotation tool pdf

Tunga Güngör, Arzucan Özgür, Utku Türk, 2020, Lang. Resour. Evaluation.

A novel gene selection method for gene expression data for the task of cancer type classification

Arzucan Özgür, F. Gürgen, Özlem Şimşek, 2019, Biology direct.

Improving Code-Switching Dependency Parsing with Semi-Supervised Auxiliary Tasks

Şaziye Betül Özateş, Saziye Betül Özates, Arzucan Özgür, 2022, NAACL-HLT.

Literature Mining and Ontology based Analysis of Host-Brucella Gene–Gene Interaction Network

Arzucan Özgür, Y. He, J. Hur, 2015, Front. Microbiol..

A Hybrid Deep Dependency Parsing Approach Enhanced With Rules and Morphology: A Case Study for Turkish

Şaziye Betül Özateş, Balkiz Öztürk Basaran, Saziye Betül Özates, 2022, IEEE Access.

Vapur: A Search Engine to Find Related Protein - Compound Pairs in COVID-19 Literature

Arzucan Özgür, Hilal Dönmez, Abdullatif Köksal, 2020, bioRxiv.

Resources for Turkish dependency parsing: introducing the BOUN Treebank and the BoAT annotation tool pdf

Tunga Güngör, Arzucan Özgür, Utku Türk, 2020, Language Resources and Evaluation.

Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology

Dragomir R. Radev, Yongqun He, Arzucan Özgür, 2011, J. Biomed. Semant..

PHISTO: pathogen-host interaction search tool

Fatih Erdogan Sevilgen, Arzucan Özgür, Saliha Durmus Tekir, 2013, Bioinform..

Identifying gene-disease associations using centrality on a literature mined gene-interaction network

Dragomir R. Radev, Arzucan Özgür, Thuy Vu, 2008, ISMB.

Michigan molecular interactions r2: from interacting proteins to pathways

Jignesh M. Patel, Yuanyuan Tian, Jing Gao, 2008, Nucleic Acids Res..

Text and Network Mining for Literature-Based Scientific Discovery in Biomedicine

Dragomir R. Radev, Arzucan Özgür, Arzucan Özgür, 2010 .

Semi-Supervised Classification for Extracting Protein Interaction Sentences using Dependency Parsing

Dragomir R. Radev, Arzucan Özgür, Günes Erkan, 2007, EMNLP.

A novel methodology on distributed representations of proteins using their interacting ligands

Arzucan Özgür, Hakime Öztürk, Elif Ozkirimli Olmez, 2018, Bioinform..

Exploring Chemical Space using Natural Language Processing Methodologies for Drug Discovery

Arzucan Özgür, Hakime Öztürk, Teodoro Laino, 2020, Drug discovery today.

Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine

Qingyu Chen, Zhiyong Lu, Karin M. Verspoor, 2019, Database J. Biol. Databases Curation.

Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining

Yongqun He, Junguk Hur, Arzucan Özgür, 2012, Journal of Biomedical Semantics.

GLASS: a comprehensive database for experimentally validated GPCR-ligand associations

Yang Zhang, Junguk Hur, Arzucan Özgür, 2015, Bioinform..

Machine learning-based identification and rule-based normalization of adverse drug reactions in drug labels

Yongqun He, Junguk Hur, Arzucan Özgür, 2019, BMC Bioinformatics.

DeepDTA: deep drug–target binding affinity prediction

Arzucan Özgür, Hakime Öztürk, Elif Ozkirimli Olmez, 2018, Bioinform..

BIOSSES: a semantic sentence similarity estimation system for the biomedical domain

Arzucan Özgür, Hakime Öztürk, Gizem Sogancioglu, 2017, Bioinform..

Ontology-based literature mining of E. coli vaccine-associated gene interaction networks

Arzucan Özgür, Y. He, J. Hur, 2017, Journal of Biomedical Semantics.

The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature

Arzucan Özgür, Y. He, J. Hur, 2016, BioData Mining.

Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions

Arzucan Özgür, Y. He, J. Hur, 2015, Journal of Biomedical Semantics.

Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs

Yongqun He, Junguk Hur, Arzucan Özgür, 2018, Journal of Biomedical Semantics.

Extracting Adverse Drug Reactions using Deep Learning and Dictionary Based Approaches

Yongqun He, Junguk Hur, Arzucan Özgür, 2017, TAC.

The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature

Yongqun He, Junguk Hur, Arzucan Özgür, 2016, BioData Mining.

Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions

Yongqun He, Junguk Hur, Arzucan Özgür, 2015, Journal of Biomedical Semantics.

Öğrenme Stilleri: Tanımlamalar, Modeller ve İşlevleri

R.Levent Veznedaroğlu, A. Oytun Özgür, Arzucan Özgür, 2005 .

Cluster-based mention typing for named entity disambiguation

Arzucan Özgür, Arda Çelebi, 2020, Natural Language Engineering.

N-gram Parsing for Jointly Training a Discriminative Constituency Parser

Arzucan Özgür, Arda Çelebi, Arzucan Özgür, 2013, Polibits.

Segmenting hashtags and analyzing their grammatical structure

Arzucan Özgür, Arda Çelebi, Arzucan Özgür, 2018, J. Assoc. Inf. Sci. Technol..

Towards Building a Political Protest Database to Explain Changes in the Welfare State

Erdem Yörük, Arzucan Özgür, Çagil Sönmez, 2016, LaTeCH@ACL.

Efficient indexing technique for XML-based electronic product catalogs

Taflan I. Gündem, Arzucan Özgür, Arzucan Özgür, 2006, Electron. Commer. Res. Appl..

Self-training a Constituency Parser using n-gram Trees

Arzucan Özgür, Arda Çelebi, Arzucan Özgür, 2014, LREC.

Turkish Tweet Classification with Transformer Encoder

Atif Emre Yüksel, Yacsar Alim Türkmen, Arzucan Özgür, 2019, RANLP.

WideDTA: prediction of drug-target binding affinity pdf

Arzucan Özgür, Hakime Öztürk, Elif Ozkirimli Olmez, 2019, ArXiv.

Linking entities through an ontology using word embeddings and syntactic re-ranking

Arzucan Özgür, Ilknur Karadeniz, 2019, BMC Bioinformatics.

A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction

Arzucan Özgür, Hakime Öztürk, E. Olmez, 2016, BMC Bioinformatics.

A Framework for Automatic Generation of Spoken Question-Answering Data

E. Arisoy, Arzucan Özgür, Yusufcan Manav, 2022, EMNLP.

Statistical representation models for mutation information within genomic data

Arzucan Özgür, F. Gürgen, N. O. Ozcan, 2019, BMC Bioinformatics.

BOUN-ISIK Participation: An Unsupervised Approach for the Named Entity Normalization and Relation Extraction of Bacteria Biotopes

Arzucan Özgür, İlknur Karadeniz, Ömer Faruk Tuna, 2019, EMNLP.

Extension of the Interaction Network Ontology for Literature Mining of Gene-gene Interaction Networks from Sentences with Multiple Interaction Keywords

Yongqun He, Junguk Hur, Arzucan Özgür, 2015, BDM2I@ISWC.

BOUNCE: Sentiment Classification in Twitter using Rich Feature Sets

Arzucan Özgür, Arda Çelebi, Suzan Üsküdarli, 2013, *SEMEVAL.

WideDTA: prediction of drug-target binding affinity

Elif Ozkirimli, Hakime Ozturk, Arzucan Ozgur, 2019, ArXiv.

Linking entities through an ontology using word embeddings and syntactic re-ranking

Arzucan Özgür, Ilknur Karadeniz, Arzucan Özgür, 2019, BMC Bioinformatics.

Automatic query generation using word embeddings for retrieving passages describing experimental methods

Arzucan Özgür, Ferhat Aydin, Zehra Melce Hüsünbeyi, 2017, Database J. Biol. Databases Curation.

Text Categorization with Class-Based and Corpus-Based Keyword Selection

Levent Özgür, Tunga Güngör, Arzucan Özgür, 2005, ISCIS.

Literature-Based Discovery of IFN-γ and Vaccine-Mediated Gene Interaction Networks

Dragomir R. Radev, Arzucan Özgür, Y. He, 2010, Journal of biomedicine & biotechnology.

Automated Neuroanatomical Relation Extraction: A Linguistically Motivated Approach with a PVT Connectivity Graph Case Study

Arzucan Özgür, Resit Canbeyli, Erinç Gökdeniz, 2016, Front. Neuroinform..

Detection and categorization of bacteria habitats using shallow linguistic analysis

Arzucan Özgür, Arzucan Özgür, Ilknur Karadeniz, 2015, BMC Bioinformatics.

A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction

Arzucan Özgür, Hakime Öztürk, Elif Ozkirimli Olmez, 2016, BMC Bioinformatics.