I. Medina

发表

Highly sensitive and ultrafast read mapping for RNA-seq analysis

E. S. Quintana-Ortí, E. S. Quintana‐Ortí, J. Dopazo, 2016, DNA research : an international journal for rapid publication of reports on genes and genomes.

HGVA: the Human Genome Variation Archive

Joaquín Dopazo, Marta Bleda, Joaquín Tárraga, 2017, Nucleic Acids Res..

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

Kevin C. Dorff, Aaron M. Smalter, Stephen C. Harris, 2010, Nature Biotechnology.

Identification of epistatic interactions through genome-wide association studies in sporadic medullary and juvenile papillary thyroid carcinomas

Cristina Y. González, Ignacio Medina, Marta Bleda, 2015, BMC Medical Genomics.

Discovering the hidden sub-network component in a ranked list of genes or proteins derived from genomic experiments

J. Dopazo, I. Medina, A. Amadoz, 2012, Nucleic acids research.

SNP and haplotype mapping for genetic analysis in the rat

E. Birney, R. Guigó, M. Bihoreau, 2008, Nature Genetics.

Initial Genomics of the Human Nucleolus

A. Conesa, Javier Santoyo-Lopez, J. Dopazo, 2010, PLoS genetics.

The European Genome-phenome Archive of human data consented for biomedical research

Arcadi Navarro, Ignacio Medina, Thomas Laurent, 2015, Nature Genetics.

Concurrent and Accurate Short Read Mapping on Multicore Platforms

E. S. Quintana‐Ortí, J. Dopazo, I. Medina, 2013 .

Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing

Rubén Sánchez, Joaquín Dopazo, Ignacio Medina, 2011, Nucleic Acids Res..

FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments

J. Dopazo, I. Medina, J. Tárraga, 2007, Nucleic Acids Res..

Fast inexact mapping using advanced tree exploration on backward search methods

J. Dopazo, I. Medina, J. Tárraga, 2015, BMC Bioinformatics.

GEPAS, a web-based tool for microarray data analysis and interpretation

Joaquín Dopazo, Ignacio Medina, Stefan Götz, 2008, Nucleic Acids Res..

A map of human microRNA variation uncovers unexpectedly high levels of variability

Joaquín Dopazo, Ignacio Medina, Eva Alloza, 2012, Genome Medicine.

Babelomics 5.0: functional interpretation for new generations of genomic data

Rosa D. Hernansaiz-Ballesteros, Marta Bleda, Francisco Salavert, 2015, Nucleic Acids Res..

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

Joaquín Dopazo, Ignacio Medina, Stefan Götz, 2010, Nucleic Acids Res..

Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics

Joaquín Dopazo, Ignacio Medina, Joaquín Tárraga, 2007, Nucleic Acids Res..

A map of human microRNA variation uncovers unexpectedly high levels of variability

J. Dopazo, I. Medina, J. Jimenez-Almazan, 2012, Genome Medicine.

Multicore and Cloud-Based Solutions for Genomic Variant Analysis

Cristina Y. González, Marta Bleda, Francisco Salavert, 2012, Euro-Par Workshops.

Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies

Joaquín Dopazo, Ignacio Medina, Joaquín Tárraga, 2009, Nucleic Acids Res..

Whole-genome bisulfite DNA sequencing of a DNMT3B mutant patient

M. Esteller, J. Dopazo, I. Medina, 2012, Epigenetics.

Biological processes, properties and molecular wiring diagrams of candidate low-penetrance breast cancer susceptibility genes

J. Dopazo, I. Medina, A. Berenguer, 2008, BMC Medical Genomics.

ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling

Joaquín Dopazo, Ignacio Medina, Joaquín Tárraga, 2007, Nucleic Acids Res..

A framework for genomic sequencing on clusters of multicore and manycore processors

Joaquín Dopazo, Enrique S. Quintana-Ortí, Ignacio Medina, 2018, Int. J. High Perform. Comput. Appl..

Acceleration of short and long DNA read mapping without loss of accuracy using suffix array

Ignacio Blanquer, Joaquín Dopazo, Ignacio Medina, 2014, Bioinform..

Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases

Joaquín Dopazo, Ignacio Medina, Joost J. J. van Durme, 2007, Nucleic Acids Res..

CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources

Marta Bleda, Francisco Salavert, Joaquín Dopazo, 2012, Nucleic Acids Res..

A web-based interactive framework to assist in the prioritization of disease candidate genes in whole-exome sequencing studies

Francisco Salavert, Joaquín Dopazo, Ignacio Medina, 2014, Nucleic Acids Res..

Actionable pathways: interactive discovery of therapeutic targets using signaling pathway models

Francisco Salavert, Joaquín Dopazo, Ignacio Medina, 2016, Nucleic Acids Res..

PyCellBase, an efficient python package for easy retrieval of biological data from heterogeneous sources

Francisco J. Lopez, A. Rendon, J. Dopazo, 2019, BMC Bioinformatics.

Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments

Joaquín Dopazo, Ignacio Medina, Stefan Götz, 2008, Nucleic Acids Res..

Using Papers Citations for Selecting the Best Genomic Databases

Oscar Pastor, Ana M. Levin, Joaquín Dopazo, 2011, 2011 30th International Conference of the Chilean Computer Science Society.

Identification of epistatic interactions through genome-wide association studies in sporadic medullary and juvenile papillary thyroid carcinomas

J. Dopazo, I. Medina, M. Bleda, 2015, BMC Medical Genomics.

VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by Next-Generation Sequencing

Cristina Y. González, Marta Bleda, Francisco Salavert, 2012, Nucleic Acids Res..

Inferring the regulatory network behind a gene expression experiment

Marta Bleda, Francisco Salavert, Joaquín Dopazo, 2012, Nucleic Acids Res..

Scalable RNA Sequencing on Clusters of Multicore Processors

Enrique S. Quintana-Ortí, Joaquín Dopazo, Ignacio Medina, 2015, 2015 IEEE Trustcom/BigDataSE/ISPA.

Select Your SNPs (SYSNPs): a web tool for automatic and massive selection of SNPs

Joaquín Dopazo, Arcadi Navarro, Ignacio Medina, 2012, Int. J. Data Min. Bioinform..