J. Mallm

发表

Estimating novel potential drug targets of Plasmodium falciparum by analysing the metabolic network of knock-out strains in silico.

R. Eils, R. König, S. Fatumo, 2009, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

HP1 is involved in regulating the global impact of DNA methylation on alternative splicing.

Karsten Rippe, Gil Ast, Eran Meshorer, 2015, Cell reports.

Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development

J. Mallm, V. B. Teif, K. Rippe, 2014, Genome research.

Taking into account nucleosomes for predicting gene expression.

Karsten Rippe, Yevhen Vainshtein, J. Mallm, 2013, Methods.

Retrieving Chromatin Patterns from Deep Sequencing Data Using Correlation Functions.

J. Mallm, K. Rippe, Fabian Erdel, 2017, Biophysical journal.

Retrieving chromatin patterns from deep sequencing data using correlation functions

J. Mallm, K. Rippe, Fabian Erdel, 2016, bioRxiv.

Single-nucleus chromatin accessibility reveals intratumoral epigenetic heterogeneity in IDH1 mutant gliomas

J. Mallm, A. von Deimling, W. Wick, 2019, Acta Neuropathologica Communications.

Suv4-20h2 mediates chromatin compaction and is important for cohesin recruitment to heterochromatin.

K. Rohr, G. Schotta, H. Leonhardt, 2013, Genes & development.

Genome-wide nucleosome positioning during embryonic stem cell development

J. Mallm, V. B. Teif, K. Rippe, 2012, Nature Structural &Molecular Biology.

DNMT and HDAC inhibitors induce cryptic transcription start sites encoded in long terminal repeats

Nakul M. Shah, Christopher R. Schmidt, C. Plass, 2017, Nature Genetics.

Environment‐induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children

Roland Eils, Stefan Wiemann, Matthias Schlesner, 2016, Molecular systems biology.

Increased vitamin D levels at birth and in early infancy increase offspring allergy risk-evidence for involvement of epigenetic mechanisms.

Roland Eils, Dieter Weichenhan, Karsten Rippe, 2016, The Journal of allergy and clinical immunology.

Methylome-based cell-of-origin modeling (Methyl-COOM) identifies aberrant expression of immune regulatory molecules in CLL

J. Byrd, C. Plass, Y. Assenov, 2020, Genome Medicine.

Methylome-based cell-of-origin modeling (Methyl-COOM) identifies aberrant expression of immune regulatory molecules in CLL

J. Byrd, C. Plass, Y. Assenov, 2020, Genome Medicine.

Pheno-seq – linking visual features and gene expression in 3D cell culture systems

Fabian J Theis, C. Conrad, R. Eils, 2019, Scientific Reports.

Genome-wide DNA methylation landscape defines specialization of regulatory T cells in tissues

C. Plass, B. Brors, J. Mallm, 2017, Nature Immunology.

Hematopoietic stem cells fail to regenerate following inflammatory challenge

T. Holland-Letz, F. Buettner, S. Haas, 2020, bioRxiv.

Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks

M. Vingron, P. Lichter, R. König, 2019, Molecular systems biology.

HMGB2 Loss upon Senescence Entry Disrupts Genomic Organization and Induces CTCF Clustering across Cell Types.

J. Mallm, K. Rippe, D. Marenduzzo, 2018, Molecular cell.

Topological demarcation by HMGB2 is disrupted early upon senescence entry across cell types and induces CTCF clustering

Ivan G. Costa, J. Mallm, K. Rippe, 2017, bioRxiv.

Comprehensive Analysis of Chromatin States in Atypical Teratoid/Rhabdoid Tumor Identifies Diverging Roles for SWI/SNF and Polycomb in Gene Regulation.

David T. W. Jones, R. Eils, J. Korbel, 2019, Cancer cell.

Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming

J. Mallm, K. Rippe, F. Lyko, 2020, Communications Biology.

Hypermutation of the Inactive X Chromosome Is a Frequent Event in Cancer

Roland Eils, Hans Lehrach, Stefan M. Pfister, 2013, Cell.

Inflammatory exposure drives long-lived impairment of hematopoietic stem cell self-renewal activity and accelerated aging.

T. Holland-Letz, F. Buettner, M. Schlesner, 2022, Cell stem cell.

Differentiation‐related epigenomic changes define clinically distinct keratinocyte cancer subclasses

J. Mallm, F. Lyko, G. Raddatz, 2022, Molecular systems biology.

Compartments in medulloblastoma with extensive nodularity are connected through differentiation along the granular precursor lineage

David C. Jones, S. Pfister, J. Saez-Rodriguez, 2022, bioRxiv.

Generation of conditional null alleles for APP and APLP2

J. Mallm, U. Müller, M. Filippov, 2010, Genesis.