Lars Malmström

发表

Structural Probing of a Protein Phosphatase 2A Network by Chemical Cross-Linking and Mass Spectrometry

R. Aebersold, Raymond H. Mak, F. Hartl, 2012, Science.

The Yeast Resource Center Public Data Repository

Lars Malmström, Michael Riffle, Trisha N. Davis, 2004, Nucleic Acids Res..

Assigning function to yeast proteins by integration of technologies.

Brian E Snydsman, D. Baker, S. Fields, 2003, Molecular cell.

Free modeling with Rosetta in CASP6

David E. Kim, P. Bradley, K. Misura, 2005, Proteins.

OpenMS: a flexible open-source software platform for mass spectrometry data analysis

K. Reinert, R. Aebersold, O. Kohlbacher, 2016, Nature Methods.

De novo prediction of three-dimensional structures for major protein families.

Richard Bonneau, D. Baker, C. Strauss, 2002, Journal of molecular biology.

Structural proteomics, electron cryo-microscopy and structural modeling approaches in bacteria–human protein interactions

Lars Malmström, Hamed Khakzad, J. Malmström, 2020, Medical Microbiology and Immunology.

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

Ben C. Collins, Olga T. Schubert, Saša M. Miladinović, 2014, Nature Biotechnology.

Reproducible quantitative proteotype data matrices for systems biology

R. Aebersold, Lars Malmström, H. Röst, 2015, Molecular biology of the cell.

Superfamily Assignments for the Yeast Proteome through Integration of Structure Prediction with the Gene Ontology

Richard Bonneau, D. Baker, C. Strauss, 2007, PLoS biology.

Quantitative proteomics of microbes: Principles and applications to virulence

Lars Malmström, Ruedi Aebersold, Johan Malmström, 2011, Proteomics.

Deciphering diatom biochemical pathways via whole-cell proteomics.

B. Nunn, D. Goodlett, Lars Malmström, 2009, Aquatic microbial ecology : international journal.

Vinculin targeting by Shigella IpaA promotes stable cell adhesion independent of mechanotransduction

Lars Malmström, Hamed Khakzad, M. Fontecave, 2019, bioRxiv.

Identification of secreted glycoproteins of human prostate and bladder stromal cells by comparative quantitative proteomics

D. Goodlett, Lars Malmström, S. Shaffer, 2009, The Prostate.

Cerebrospinal fluid proteome maps detect pathogen-specific host response patterns in meningitis

Paul Theodor Pyl, Lars Malmström, J. Malmström, 2020, bioRxiv.

aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data

Lars Malmström, Ruedi Aebersold, George Rosenberger, 2014, Bioinform..

A tool for the automated, targeted analysis of data-independent acquisition MS-data: OpenSWATH

Ben C. Collins, Olga T. Schubert, R. Aebersold, 2016 .

In vivo Cross-Linking MS of the Complement System MAC Assembled on Live Gram-Positive Bacteria

Lars Malmström, Hamed Khakzad, J. Malmström, 2021, Frontiers in Genetics.

A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery.

R. Aebersold, Lars Malmström, O. Rinner, 2015, Journal of proteome research.

“A Proteogenomic workflow reveals distinct molecular phenotypes related to breast cancer appearance”

Paul Theodor Pyl, S. Klasson, Lars Malmström, 2020, bioRxiv.

Genome-wide structural and functional protein characterization by ab initio protein structure prediction

Lars Malmström, L. Malmström, 2005 .

, Streptococcus pyogenes ( Protein sHIP ) in Novel Protein and Virulence Factor Functional and Structural Properties of a Microbiology

Lars Malmström, L. Björck, M. Varjosalo, 2014 .

Extracellular Vesicle-Contained microRNA of C. elegans as a Tool to Decipher the Molecular Basis of Nematode Parasitism

Lars Malmström, T. Duguet, R. Kuzyakiv, 2020, Frontiers in Cellular and Infection Microbiology.

Deciphering the mode of action of the processive polysaccharide modifying enzyme dermatan sulfate epimerase 1 by hydrogen–deuterium exchange mass spectrometry

J. Zaia, Lars Malmström, A. Malmström, 2015, Chemical science.

Proteomics: A new research area for the biomedical field

Lars Malmström, J. Malmström, G. Marko‐Varga, 2005 .

xTract: software for characterizing conformational changes of protein complexes by quantitative cross-linking mass spectrometry

Lars Malmström, Ruedi Aebersold, Hannes L Röst, 2015, Nature Methods.

Streptococcus pyogenes in Human Plasma

Andreas Quandt, Lars Malmström, Ruedi Aebersold, 2011, The Journal of Biological Chemistry.

A quantitative Streptococcus pyogenes–human protein–protein interaction map reveals localization of opsonizing antibodies

Lars Malmström, L. Björck, Hamed Khakzad, 2019, Nature Communications.

Cross-Link Guided Molecular Modeling with ROSETTA

Lars Malmström, Ruedi Aebersold, Alexander Leitner, 2013, PloS one.

Comprehensive ADP‐ribosylome analysis identifies tyrosine as an ADP‐ribose acceptor site

Lars Malmström, M. Hottiger, Kapila Gunasekera, 2018, EMBO reports.

The structure of human dermatan sulfate epimerase 1 emphasizes the importance of C5-epimerization of glucuronic acid in higher organisms† †Electronic supplementary information (ESI) available. See DOI: 10.1039/d0sc05971d

Lars Malmström, Hamed Khakzad, J. Malmström, 2020, Chemical science.