Sanguk Kim

发表

Molecular evolution of protein conformational changes revealed by a network of evolutionarily coupled residues.

Jouhyun Jeon, Hyun-Jun Nam, Y. Choi, 2011, Molecular biology and evolution.

Protein design by fusion: implications for protein structure prediction and evolution.

Hyun-Jun Nam, Sanguk Kim, S. Han, 2013, Acta crystallographica. Section D, Biological crystallography.

Evolutionary conservation in multiple faces of protein interaction

Jae-Seong Yang, Y. Choi, Jae-Seong Yang, 2009, Proteins.

Uniformity, ideality, and hydrogen bonds in transmembrane alpha-helices.

Sanguk Kim, T. Cross, 2002, Biophysical journal.

Transmembrane glycine zippers: physiological and pathological roles in membrane proteins.

Tae-Joon Jeon, Duan Yang, James U Bowie, 2005, Proceedings of the National Academy of Sciences of the United States of America.

A limited universe of membrane protein families and folds

Yungok Ihm, James U Bowie, J. Bowie, 2006, Protein science : a publication of the Protein Society.

Arabidopsis Nuclear-Encoded Plastid Transit Peptides Contain Multiple Sequence Subgroups with Distinctive Chloroplast-Targeting Sequence Motifs[W]

Jong Kyoung Kim, Dong Wook Lee, I. Hwang, 2008, The Plant Cell Online.

Network Modules of the Cross-Species Genotype-Phenotype Map Reflect the Clinical Severity of Human Diseases

Jihye Hwang, Sanguk Kim, S. Han, 2015, PloS one.

Evolutionary history of human disease genes reveals phenotypic connections and comorbidity among genetic diseases

Juyong Park, Jae-Seong Yang, Jihye Hwang, 2012, Scientific Reports.

Protein localization as a principal feature of the etiology and comorbidity of genetic diseases

Juyong Park, Jae-Seong Yang, Sanguk Kim, 2011, Molecular systems biology.

Network-based machine learning in colorectal and bladder organoid models predicts anti-cancer drug efficacy in patients

Sanguk Kim, S. Han, Kunyoo Shin, 2020, Nature Communications.

2D solid state NMR spectral simulation of 3(10), alpha, and pi-helices.

Sanguk Kim, T. Cross, 2004, Journal of magnetic resonance.

Spatial and functional organization of mitochondrial protein network

Jouhyun Jeon, Jae-Seong Yang, Sanguk Kim, 2013, Scientific Reports.

Construction of functional interaction networks through consensus localization predictions of the human proteome.

Jae-Seong Yang, Solip Park, Jae-Seong Yang, 2009, Journal of proteome research.

Discovery of Cellular Proteins Required for the Early Steps of HCV Infection Using Integrative Genomics

Ji Hoon Park, Jae-Seong Yang, Sanguk Kim, 2013, PloS one.

Domain-mediated interactions for protein subfamily identification

Sanguk Kim, S. Han, Inhae Kim, 2020, Scientific Reports.

Predictive design of mRNA translation initiation region to control prokaryotic translation efficiency.

Jae-Seong Yang, Sang Woo Seo, Gyoo Yeol Jung, 2013, Metabolic engineering.

Predictive combinatorial design of mRNA translation initiation regions for systematic optimization of gene expression levels

Jae-Seong Yang, Sang Woo Seo, Gyoo Yeol Jung, 2014, Scientific Reports.

Snorkeling preferences foster an amino acid composition bias in transmembrane helices.

Yohan Lee, James U Bowie, J. Bowie, 2004, Journal of molecular biology.

Common occurrence of internal repeat symmetry in membrane proteins

Jouhyun Jeon, Jae-Seong Yang, Jouhyun Jeon, 2008, Proteins.

OASIS: Online Application for the Survival Analysis of Lifespan Assays Performed in Aging Research

Jae-Seong Yang, Hong Gil Nam, Hyun-Jun Nam, 2011, PloS one.

Epigenetic regulation of mammalian Hedgehog signaling to the stroma 3 determines the molecular subtype of bladder cancer 4 5 6

Sanguk Kim, Kyoung-Hwa Lee, Jae-seok Roe, 2022 .

Single-cell RNA sequencing identifies shared differentiation paths of mouse thymic innate T cells

Sanguk Kim, S. Han, E. Shin, 2020, Nature Communications.

Evolutionary coupling analysis identifies the impact of disease-associated variants at less-conserved sites

Sanguk Kim, S. Han, Inhae Kim, 2019, Nucleic acids research.

Global Sequence Homology Detection Using Word Conservation Probability

Jae-Seong Yang, Sanguk Kim, Dae-Kyum Kim, 2011 .

Investigation of Pathogenic Genes in Peri-Implantitis from Implant Clustering Failure Patients: A Whole-Exome Sequencing Pilot Study

Jihye Hwang, Sanguk Kim, Jae-Hoon Lee, 2014, PloS one.

Global gene expression profile of Orientia tsutsugamushi

Jae-Seong Yang, Sanguk Kim, Mi-Kyung Lee, 2010, Proteomics.

Link clustering explains non-central essential genes in protein interaction networks

Sanguk Kim, S. Han, Inhae Kim, 2019, bioRxiv.

Computational Design of Binding Proteins to EGFR Domain II

Y. Choi, Sanguk Kim, Hyun-soo Cho, 2014, PloS one.

Divergence of Noncoding Regulatory Elements Explains Gene–Phenotype Differences between Human and Mouse Orthologous Genes

Sanguk Kim, S. Han, Inhae Kim, 2018, Molecular biology and evolution.

Role of BI-1 (TEGT)-mediated ERK1/2 activation in mitochondria-mediated apoptosis and splenomegaly in BI-1 transgenic mice.

Sanguk Kim, Y. Seo, Su-Jeong Kim, 2012, Biochimica et biophysica acta.

PDZ Domain-containing 1 (PDZK1) Protein Regulates Phospholipase C-β3 (PLC-β3)-specific Activation of Somatostatin by Forming a Ternary Complex with PLC-β3 and Somatostatin Receptors*

Sanguk Kim, S. Ryu, J. Choi, 2012, The Journal of Biological Chemistry.

Subtype-specific roles of phospholipase C-β via differential interactions with PDZ domain proteins.

Sanguk Kim, S. Ryu, P. Suh, 2011, Advances in enzyme regulation.

Link clustering explains non-central and contextually essential genes in protein interaction networks

Sanguk Kim, S. Han, Inhae Kim, 2019, Scientific Reports.

Both the Hydrophobicity and a Positively Charged Region Flanking the C-Terminal Region of the Transmembrane Domain of Signal-Anchored Proteins Play Critical Roles in Determining Their Targeting Specificity to the Endoplasmic Reticulum or Endosymbiotic Organelles in Arabidopsis Cells[W]

I. Hwang, Sanguk Kim, Sumin Lee, 2011, Plant Cell.

KIN‐4/MAST kinase promotes PTEN‐mediated longevity of Caenorhabditis elegans via binding through a PDZ domain

Sang Ki Park, Hyun-Jun Nam, Jae-Seong Yang, 2019, Aging cell.

Bax Inhibitor-1 Is a pH-dependent Regulator of Ca2+ Channel Activity in the Endoplasmic Reticulum*

Sanguk Kim, John Calvin Reed, Y. Seo, 2008, Journal of Biological Chemistry.

Spread of Mutant Middle East Respiratory Syndrome Coronavirus with Reduced Affinity to Human CD26 during the South Korean Outbreak

Sanguk Kim, Hyun-soo Cho, S. Han, 2016, mBio.

Uniformity, Ideality, and Hydrogen Bonds in Transmembrane α-Helices

Sanguk Kim, T. Cross, 2002 .

Constitutive activation of T cells by γ2-herpesviral GPCR through the interaction with cellular CXCR4.

Hyun-Jun Nam, Sanguk Kim, Hyun-soo Cho, 2017, Biochimica et biophysica acta. Molecular cell research.

Deconvolution of bulk tumors into distinct immune cell states predicts colorectal cancer recurrence

Yeon Jeong Kim, S. Yun, H. Kim, 2022, iScience.

Head formation requires Dishevelled degradation that is mediated by March2 in concert with Dapper1

Jae-Seong Yang, Sanguk Kim, Jin-Kwan Han, 2018, Development.

March2 is required for head formation by mediating Dishevelled degradation in concert with Dapper1

Jae-Seong Yang, Sanguk Kim, Jin-Kwan Han, 2018 .

Phenotypic Characterization of Peripheral T Cells and Their Dynamics in Scrub Typhus Patients

Sanguk Kim, Nam-Hyuk Cho, Ik-sang Kim, 2012, PLoS neglected tropical diseases.

Rampant Exchange of the Structure and Function of Extramembrane Domains between Membrane and Water Soluble Proteins

Sanguk Kim, James U. Bowie, Seong Kyu Han, 2013, PLoS Comput. Biol..

Network rewiring is an important mechanism of gene essentiality change

James U. Bowie, Seong Kyu Han, Inhae Kim, 2012, Scientific Reports.

Creation of bladder assembloids mimicking tissue regeneration and cancer

Tae-Young Roh, Sanguk Kim, J. Ku, 2020, Nature.

Role of Amphipathic Helix of a Herpesviral Protein in Membrane Deformation and T Cell Receptor Downregulation

Jae-Seong Yang, Sanguk Kim, Jae U. Jung, 2008, PLoS pathogens.

Genome-Based Construction of the Metabolic Pathways of Orientia tsutsugamushi and Comparative Analysis within the Rickettsiales Order

Jae-Seong Yang, Sanguk Kim, Nam-Hyuk Cho, 2008, Comparative and functional genomics.

Functional analysis of dicer-2 missense mutations in the siRNA pathway of Drosophila.

Sanguk Kim, R. Carthew, Young Sik Lee, 2008, Biochemical and biophysical research communications.

Energy metabolism and whole-exome sequencing-based analysis of Sasang constitution: a pilot study

Sanguk Kim, Jin Han, D. Seo, 2017, Integrative medicine research.

Bioinformatic approaches for the structure and function of membrane proteins.

Jouhyun Jeon, Hyun-Jun Nam, Jouhyun Jeon, 2009, BMB reports.

Evolutionary rewiring of regulatory networks contributes to phenotypic differences between human and mouse orthologous genes

Sanguk Kim, Inhae Kim, JungHo Kong, 2022, Nucleic acids research.

Capicua restricts cancer stem cell-like properties in breast cancer cells

Sanguk Kim, Yoontae Lee, Jeehyun Yoe, 2020, Oncogene.

Network Clustering Revealed the Systemic Alterations of Mitochondrial Protein Expression

Jae Hoon Jeong, Jouhyun Jeon, Jae-Seong Yang, 2011, PLoS Comput. Biol..

OASIS 2: online application for survival analysis 2 with features for the analysis of maximal lifespan and healthspan in aging research

Jae-Seong Yang, Dongyeop Lee, Donghyo Kim, 2016, Oncotarget.

Metazoans evolved by taking domains from soluble proteins to expand intercellular communication network

J. Bowie, Hyun-Jun Nam, Sanguk Kim, 2015, Scientific Reports.

A simple method for modeling transmembrane helix oligomers.

James U Bowie, J. Bowie, Sanguk Kim, 2003, Journal of molecular biology.

The protein interaction network of extracellular vesicles derived from human colorectal cancer cells.

D. Hwang, Jae-Seong Yang, Sanguk Kim, 2012, Journal of proteome research.

Linear Motif-Mediated Interactions Have Contributed to the Evolution of Modularity in Complex Protein Interaction Networks

Sanguk Kim, Seong Kyu Han, Inhae Kim, 2014, PLoS Comput. Biol..

Rewiring of PDZ Domain-Ligand Interaction Network Contributed to Eukaryotic Evolution

Jae-Seong Yang, Yoon Sup Choi, Solip Park, 2012, PLoS genetics.

Integration of Evolutionary Features for the Identification of Functionally Important Residues in Major Facilitator Superfamily Transporters

Jouhyun Jeon, Jae-Seong Yang, Sanguk Kim, 2009, PLoS Comput. Biol..

A multifunctional core-shell nanoparticle for dendritic cell-based cancer immunotherapy.

Young Keun Kim, Jae-Seong Yang, Sang Jin Lee, 2011, Nature nanotechnology.

Structure of the transmembrane region of the M2 protein H+ channel

J Wang, Sanguk Kim, T. Cross, 2001, Protein science : a publication of the Protein Society.

Dimerization of the transmembrane domain of amyloid precursor proteins and familial Alzheimer's disease mutants

J. Bowie, Sanguk Kim, P. Fraser, 2008, BMC Neuroscience.

Transmembrane Domain Helix Packing Stabilizes Integrin αIIbβ3 in the Low Affinity State*

J. Bowie, Sanguk Kim, M. Ginsberg, 2005, Journal of Biological Chemistry.

Pivotal role of the glycine-rich TM3 helix in gating the MscS mechanosensitive channel

J. Bowie, Sanguk Kim, I. Booth, 2005, Nature Structural &Molecular Biology.

A model of the closed form of the nicotinic acetylcholine receptor m2 channel pore.

J. Bowie, Sanguk Kim, A. K. Chamberlain, 2004, Biophysical journal.

Membrane channel structure of Helicobacter pylori vacuolating toxin: role of multiple GXXXG motifs in cylindrical channels.

J. Bowie, Sanguk Kim, A. K. Chamberlain, 2004, Proceedings of the National Academy of Sciences of the United States of America.

The Affinity of GXXXG Motifs in Transmembrane Helix-Helix Interactions Is Modulated by Long-range Communication*

D. Engelman, J. Bowie, Sanguk Kim, 2004, Journal of Biological Chemistry.

Variants at potential loci associated with Sjogren's syndrome in Koreans: A genetic association study.

Sanguk Kim, S. Han, Kwanghwan Lee, 2019, Clinical immunology.

Capicua suppresses hepatocellular carcinoma progression by controlling the ETV4–MMP1 axis

Sanguk Kim, Yoontae Lee, Jongmin Park, 2018, Hepatology.

Domain-mediated interactions for protein subfamily identification

Sanguk Kim, S. Han, Inhae Kim, 2020, Scientific Reports.

Feedback regulation via AMPK and HIF-1 mediates ROS-dependent longevity in Caenorhabditis elegans

Hyun-Jun Nam, Jae-Seong Yang, Sanguk Kim, 2014, Proceedings of the National Academy of Sciences.

Phylogenetic analysis of ABCG subfamily proteins in plants: functional clustering and coevolution with ABCGs of pathogens

Sanguk Kim, Haseong Kim, Youngsook Lee, 2019, Physiologia plantarum.

The closed state of a H+ channel helical bundle combining precise orientational and distance restraints from solid state NMR.

Sanguk Kim, K. Nishimura, T. Cross, 2002, Biochemistry.

Functional Characterization of Sequence Motifs in the Transit Peptide of Arabidopsis Small Subunit of Rubisco1[W]

Dong Wook Lee, I. Hwang, Sanguk Kim, 2005, Plant Physiology.

Expression of the Novel Wheat Gene TM20 Confers Enhanced Cadmium Tolerance to Bakers' Yeast*

Sanguk Kim, J. Schroeder, Youngsook Lee, 2008, Journal of Biological Chemistry.

RNA helicase HEL-1 promotes longevity by specifically activating DAF-16/FOXO transcription factor signaling in Caenorhabditis elegans

D. Hwang, Jae-Seong Yang, Sanguk Kim, 2015, Proceedings of the National Academy of Sciences.

Rational Engineering of Enzyme Allosteric Regulation through Sequence Evolution Analysis

Jae-Seong Yang, Sang Woo Seo, Sungho Jang, 2012, PLoS Comput. Biol..

Tetrahydrobiopterin enhances mitochondrial biogenesis and cardiac contractility via stimulation of PGC1α signaling.

Jouhyun Jeon, Jae-Seong Yang, Sanguk Kim, 2019, Biochimica et biophysica acta. Molecular basis of disease.

Changes in Hepatic Gene Expression upon Oral Administration of Taurine-Conjugated Ursodeoxycholic Acid in ob/ob Mice

Jouhyun Jeon, Jae-Seong Yang, Young Min Cho, 2010, PloS one.

Transmembrane helix uniformity examined by spectral mapping of torsion angles.

Timothy A Cross, Sanguk Kim, T. Cross, 2008, Structure.

2D solid state NMR spectral simulation of 310, α, and π-helices

Sanguk Kim, T. Cross, 2004 .

Bax Inhibitor 1 Increases Cell Adhesion through Actin Polymerization: Involvement of Calcium and Actin Binding

Jae-Seong Yang, Sanguk Kim, Y. Seo, 2010, Molecular and Cellular Biology.

Janus Model of The Na,K-ATPase β-subunit Transmembrane Domain: Distinct Faces Mediate α /β Assembly and β-β Homo- Oligomerization

J. Bowie, Sanguk Kim, A. Rajasekaran, 2007 .

Janus model of the Na,K-ATPase beta-subunit transmembrane domain: distinct faces mediate alpha/beta assembly and beta-beta homo-oligomerization.

J. Bowie, Sanguk Kim, A. Rajasekaran, 2007, Journal of molecular biology.

Exomic and transcriptomic alterations of hereditary gingival fibromatosis.

Sanguk Kim, Jae-Hoon Lee, S. Han, 2019, Oral diseases.

Capicua suppresses colorectal cancer progression via repression of ETV4 expression

Sanguk Kim, Yoontae Lee, Eunjeong Kim, 2020, Cancer Cell International.

Structural differences between thermophilic and mesophilic membrane proteins

J. Bowie, Sanguk Kim, S. Han, 2012, Protein science : a publication of the Protein Society.

Self-association of the transmembrane domain of an anthrax toxin receptor.

Sanguk Kim, A. Rath, C. Deber, 2006, Journal of molecular biology.

Transmembrane domain helix packing stabilizes integrin aIIb beta 3 in the low affinity state

Ginsberg, J. Bowie, Sanguk Kim, 2004 .

Genetic analysis of hereditary gingival fibromatosis using whole exome sequencing and bioinformatics.

Jihye Hwang, Sanguk Kim, J. H. Lee, 2017, Oral diseases.

Pyrilamine inhibits nicotine-induced catecholamine secretion

Sanguk Kim, Kyong-Tai Kim, N. J. Singh, 2014, Neurochemistry International.

Capicua suppresses colorectal cancer progression via repression of ETV4 expression

Sanguk Kim, Yoontae Lee, Eunjeong Kim, 2020, Cancer Cell International.

Transmembrane domain helix packing stabilizes integrin alphaIIbbeta3 in the low affinity state.

J. Bowie, Sanguk Kim, M. Ginsberg, 2005, The Journal of biological chemistry.

Transmembrane domain of myelin protein zero can form dimers: possible implications for myelin construction.

Anthony W Partridge, James U Bowie, J. Bowie, 2007, Biochemistry.

MON-2, a Golgi protein, mediates autophagy-dependent longevity in Caenorhabditis elegans

Hyun-Jun Nam, Sanguk Kim, Cheolju Lee, 2021, Science advances.

The mechanistic insight of a specific interaction between 15d-Prostaglandin-J2 and eIF4A suggests an evolutionary conserved role across species

Cheol‐Hee Kim, Jouhyun Jeon, Sanguk Kim, 2018, Biology Open.

Computational docking reveals evolutionary conservation of a specific interaction between 15d-Prostaglandin-J2 and eIF4A

Cheol‐Hee Kim, Jouhyun Jeon, Sanguk Kim, 2017, bioRxiv.

Arabidopsis Nuclear-Encoded Plastid Transit Peptides Contain Multiple Sequence Subgroups with Distinctive Chloroplast-Targeting Sequence Motifs[W]

Jong Kyoung Kim, Dong Wook Lee, I. Hwang, 2008, The Plant Cell Online.

Erratum to "Tetrahydrobiopterin enhances mitochondrial biogenesis and cardiac contractility via stimulation of PGC1α signaling" [Volume 1865, Issue 11, 1 November 2019, 165524].

Jouhyun Jeon, Jae-Seong Yang, Sanguk Kim, 2019, Biochimica et biophysica acta. Molecular basis of disease.

Evolutionary conservation in multiple faces of protein interaction

Y. Choi, Jae-Seong Yang, Sanguk Kim, 2009, Proteins.

ConPlex: a server for the evolutionary conservation analysis of protein complex structures

Sung Ho Ryu, Jinho Kim, Jouhyun Jeon, 2010, Nucleic Acids Res..

Predictive combinatorial design of mRNA translation initiation regions for systematic optimization of gene expression levels

Sanguk Kim, G. Jung, S. Seo, 2014, Scientific Reports.

A multifunctional core-shell nanoparticle for dendritic cell-based cancer immunotherapy.

Jae-Seong Yang, Sanguk Kim, Daehong Kim, 2011, Nature nanotechnology.

From Topology to High Resolution Membrane Protein Structures

Sanguk Kim, T. Cross, J. Quine, 2001 .