M. Ragan

A. Casadevall, R. Gutell, M. Ragan, 1995, Journal of medical and veterinary mycology : bi-monthly publication of the International Society for Human and Animal Mycology.

Widespread Distribution of Sulfated Polyphenols in Brown Algae

M. Ragan, A. Jensen, 1979 .

Quantitative studies on brown algal phenols. II. Seasonal variation in polyphenol content of Ascophyllum nodosum (L.) Le Jol. and Fucus vesiculosus (L.)

M. Ragan, A. Jensen, 1978 .

Quantitative studies on brown algal phenols. I. Estimation of absolute polyphenol content of Ascophyllum nodosum (L.) Le Jol. and Fucus vesiculosus (L.)

M. Ragan, A. Jensen, 1977 .

Phenol sulfate esters: ultraviolet, infrared, 1H and 13C nuclear magnetic resonance spectroscopic investigation

M. Ragan, 1978 .

Molecular Epidemiology of Clinical Cryptococcus neoformans Strains from India

A. Casadevall, M. Ragan, N. Jain, 2005, Journal of Clinical Microbiology.

India Strains from Cryptococcus neoformans Molecular Epidemiology of Clinical

A. Casadevall, M. Ragan, P., 2005 .

PHYLOGENETIC RELATIONSHIPS OF SPECIES OF UNCERTAIN TAXONOMIC POSITION WITHIN THE ACROCHAETIALES‐PALMARIALES COMPLEX (RHODOPHYTA): INFERENCES FROM PHENOTYPIC AND 18S rDNA SEQUENCE DATA1

M. Ragan, G. Saunders, C. J. Bird, 1995 .

Identification of domoic acid, a neuroexcitatory amino acid, in toxic mussels from eastern Prince Edward Island

Mark A. Ragan, Maurice V. Laycock, Michael Falk, 1989 .

Ribosomal RNA and the major lines of evolution: a perspective.

M. Ragan, 1988, Bio Systems.

Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence

M. Ragan, P. Hugenholtz, P. Dennis, 2017, Nature Communications.

Phylogenetic and molecular characterization of a 23S rRNA gene positions the genus Campylobacter in the epsilon subdivision of the Proteobacteria and shows that the presence of transcribed spacers is common in Campylobacter spp

R. Gutell, M. Ragan, V. Chan, 1994, Journal of bacteriology.

Characterization of the nuclear gene encoding mitochondrial aconitase in the marine red alga Gracilaria verrucosa

M. Ragan, Yi-Hong Zhou, 1995, Plant Molecular Biology.

Deciphering the nature of the coral–Chromera association

E. Ball, M. Ragan, N. Satoh, 2018, The ISME Journal.

Quantitative studies on brown algal phenols IV. Ultraviolet spectrophotometry of extracted polyphenols and implications for measuring dissolved organic matter in sea water

M. Ragan, J. Craigie, 1980 .

Quantitative studies on brown algal phenols. III. Light-mediated exudation of polyphenols from Ascophyllum nodosum (L.) Le Jol

M. Ragan, A. Jensen, 1979 .

The core root microbiome of sugarcanes cultivated under varying nitrogen fertilizer application.

M. Ragan, P. Hugenholtz, P. Dennis, 2016, Environmental microbiology.

Evolution of Biochemical Pathways: Evidence From Comparative Biochemistry

M. Ragan, D. Chapman, 1980 .

Next-generation phylogenomics

M. Ragan, C. Chan, 2013, Biology Direct.

Gallotannins of the freshwater green alga Spirogyra sp.

M. Ragan, T. Yamagishi, G. Nonaka, 1985 .

Evaluation of dye-based assay for mannuronan 5′-epimerase

M. Ragan, 1990, Hydrobiologia.

Characterization of a galactose-1-phosphate uridylyltransferase gene from the marine red alga Gracilaria gracilis

M. Ragan, A. Lluisma, 1998, Current Genetics.

Nuclear-encoded protein-coding genes of the agarophyte Gracilaria verrucosa (Gracilariales, Rhodophyta)

M. Ragan, Yi-Hong Zhou, 1996, Hydrobiologia.

Characterization of the polyubiquitin gene in the marine red alga Gracilaria verrucosa.

M. Ragan, Yi-Hong Zhou, Y. -. Zhou, 1995, Biochimica et biophysica acta.

Quantitative Prediction of miRNA-mRNA Interaction Based on Equilibrium Concentrations

Mark A. Ragan, Michael Zuker, Chikako Ragan, 2011, PLoS Comput. Biol..

Cloning and characterization of the nuclear gene and cDNAs for triosephosphate isomerase of the marine red alga Gracilaria verrucosa

M. Ragan, Yi-Hong Zhou, 2004, Current Genetics.

Quantitative Modelling of the Waddington Epigenetic Landscape.

Mark A Ragan, Atefeh Taherian Fard, M. Ragan, 2019, Methods in molecular biology.

Not just a colourful metaphor: modelling the landscape of cellular development using Hopfield networks

Sriganesh Srihari, Mark A Ragan, Jessica C Mar, 2016, npj Systems Biology and Applications.

Characterizing cancer subtypes as attractors of Hopfield networks

Mark A. Ragan, Stefan Maetschke, S. Maetschke, 2014, Bioinform..

A genomic view of the reef-building coral Porites lutea and its microbial symbionts

T. Ravasi, P. Bongaerts, O. Hoegh‐Guldberg, 2019, Nature Microbiology.

Modeling the Attractor Landscape of Disease Progression: a Network-Based Approach

Mark A. Ragan, Atefeh Taherian Fard, M. Ragan, 2017, Front. Genet..

Palmitoylation: a protein S-acylation with implications for breast cancer

M. Ragan, A. Anderson, 2016, npj Breast Cancer.

Relationships among Eucheuma denticulatum, Eucheuma isiforme and Kappaphycus alvarezii (Gigartinales, Rhodophyta) based on nuclear ssu-rRNA gene sequences

M. Ragan, A. Lluisma, 1995, Journal of Applied Phycology.

Clustering evolving proteins into homologous families

M. Ragan, C. Chan, Maisarah Mahbob, 2013, BMC Bioinformatics.

Identification of human haploinsufficient genes and their genomic proximity to segmental duplications

Karin S Kassahn, Mark A Ragan, M. Ragan, 2008, European Journal of Human Genetics.

Understanding the functional impact of copy number alterations in breast cancer using a network modeling approach.

Dhaval Patel, Sriganesh Srihari, Kum Kum Khanna, 2016, Molecular bioSystems.

Supervised, semi-supervised and unsupervised inference of gene regulatory networks

Mark A. Ragan, Stefan Maetschke, Melissa J. Davis, 2013, Briefings Bioinform..

Twelfth International Seaweed Symposium

Mark A. Ragan, Carolyn J. Bird, M. Ragan, 1987, Developments in Hydrobiology.

Visualization of image data from cells to organisms

Anne E Carpenter, Pavel Tomancak, Thomas Walter, 2010, Nature Methods.

The mammalian PYHIN gene family: Phylogeny, evolution and expression

Eva Z. Curley, K. Schroder, M. Sweet, 2012, BMC Evolutionary Biology.

Within-species lateral genetic transfer and the evolution of transcriptional regulation in Escherichia coli and Shigella

Mark A Ragan, M. Ragan, Elizabeth Skippington, 2011, BMC Genomics.

cDNA cloning and characterization of the nuclear gene encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase from the marine red alga Gracilaria verrucosa

M. Ragan, Yi-Hong Zhou, 1993, Current Genetics.

Cloning and characterization of the nuclear gene encoding plastid glyceraldehyde-3-phosphate dehydrogenase from the marine red alga Gracilaria verrucosa

M. Ragan, Yi-Hong Zhou, 2004, Current Genetics.

The high molecular weight polyphloroglucinols of the marine brown alga Fucusvesiculosus L. 1H and 13C nuclear magnetic resonance spectroscopy

M. Ragan, A. Mcinnes, J. Walter, 1985 .

Mineralocorticoid receptors: evolutionary and pathophysiological considerations.

M. Ragan, K. Kassahn, J. Funder, 2011, Endocrinology.

Cloning and characterization of a nuclear gene encoding a starch-branching enzyme from the marine red alga Gracilaria gracilis

M. Ragan, A. Lluisma, 1998, Current Genetics.

A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene.

R. Gutell, M. Ragan, C. Murphy, 1994, Proceedings of the National Academy of Sciences of the United States of America.

Are red algae plants

R. Gutell, M. Ragan, 1995 .

Jack Lamont Mclachlan (1 April 1930–13 December 2010)

M. Ragan, D. Garbary, P. von Aderkas, 2011 .

Characterization of the UDP-glucose pyrophosphorylase gene from the marine red alga Gracilaria gracilis

M. Ragan, A. Lluisma, 2004, Journal of Applied Phycology.

Fucus ‘lignin’: A reassessment

M. Ragan, 1984 .

Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences

M. Ragan, C. Murphy, C. J. Bird, 1992 .

Physodes and the Phenolic Compounds of Brown Algae. Composition and Significance of Physodes in vivo

M. Ragan, 1976 .

Bioactivities in marine genera of Atlantic Canada: The unexplored potential

M. Ragan, 1984 .

Physodes and the phenolic compounds of brown algae. Isolation and characterization of phloroglucinol polymers from Fucus vesiculosus (L.)

M. Ragan, J. Craigie, 1976, Canadian journal of biochemistry.

The high molecular weight polyphloroglucinols of the marine brown alga Fucusvesiculosus L.: degradative analysis

M. Ragan, 1985 .

A preliminary investigation of the order Bangiales (Bangiophycidae, Rhodophyta) based on sequences of nuclear small‐subunit ribosomal RNA genes

R. Gutell, M. Ragan, R. Singh, 1995 .

Variant forms of a group I intron in nuclear small-subunit rRNA genes of the marine red alga Porphyra spiralis var. amplifolia.

M. Ragan, M. C. Oliveira, 1994, Molecular biology and evolution.

Molecular relationships among the Gracilariaceae (Rhodophyta): further observations on some undetermined species

R. Gutell, M. Ragan, A. Critchley, 1994 .

Biotechnology potential for hoshi-nori production

M. Ragan, I. Mccracken, L. Chen, 1990 .

Whole-genome sequence of the oriental lung fluke Paragonimus westermani

M. Ragan, L. Krause, D. McManus, 2018, GigaScience.

Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium

Timothy G. Stephens, D. Burt, M. Ragan, 2021, BMC biology.

Structural rearrangements drive extensive genome divergence between symbiotic and free-living Symbiodinium

Timothy G. Stephens, D. Burt, M. Ragan, 2019 .

Detecting recombination in evolving nucleotide sequences

Mark A. Ragan, Robert G. Beiko, Cheong Xin Chan, 2006, BMC Bioinformatics.

MACHOS: Markov clusters of homologous subsequences

Mark A. Ragan, Simon Wong, M. Ragan, 2008, ISMB.

Breast cancer classification: linking molecular mechanisms to disease prognosis

Mark A. Ragan, Atefeh Taherian-Fard, Sriganesh Srihari, 2015, Briefings Bioinform..

Prototheca richardsi, a pathogen of anuran larvae, is related to a clade of protistan parasites near the animal-fungal divergence.

M. Ragan, T. Beebee, G. C. Baker, 1999, Microbiology.

Extracting reaction networks from databases–opening Pandora’s box

Mark A. Ragan, Lars K. Nielsen, Melissa J. Davis, 2013, Briefings Bioinform..

Symbiodinium genomes reveal adaptive evolution of 2 functions related to symbiosis 3

Timothy G. Stephens, P. Bongaerts, M. Ragan, 2017 .

Symbiodinium genomes reveal positive selection of symbiosis-related genes

Timothy G. Stephens, P. Bongaerts, M. Ragan, 2017 .

mCOPA: analysis of heterogeneous features in cancer expression data

Mark A. Ragan, Chenwei Wang, Stefan Maetschke, 2012, Journal of Clinical Bioinformatics.

Evolutionary Dynamics of Small RNAs in 27 Escherichia coli and Shigella Genomes

Mark A. Ragan, M. Ragan, Elizabeth Skippington, 2012, Genome biology and evolution.

Detecting lateral genetic transfer : a phylogenetic approach.

Mark A Ragan, Robert G Beiko, M. Ragan, 2008, Methods in molecular biology.

Distributional profiles of homologous open reading frames among bacterial phyla: implications for vertical and lateral transmission.

Robert L Charlebois, Mark A Ragan, M. Ragan, 2002, International journal of systematic and evolutionary microbiology.

Gene content and organization of a 281-kbp contig from the genome of the extremely thermophilic archaeon, Sulfolobus solfataricus P2.

C. Sensen, W. Doolittle, R. Garrett, 2000, Genome.

Morphological stasis masks ecologically divergent coral species on tropical reefs

D. Hayward, P. Bongaerts, O. Hoegh‐Guldberg, 2021, Current Biology.

Functional implications of the emergence of alternative splicing in hnRNP A/B transcripts.

M. Ragan, K. Kassahn, Adam Skarshewski, 2010, RNA.

The ReFuGe 2020 Consortium—using “omics” approaches to explore the adaptability and resilience of coral holobionts to environmental change

E. Ball, T. Ravasi, O. Hoegh‐Guldberg, 2015, Front. Mar. Sci..

An evaluation of DNA-damage response and cell-cycle pathways for breast cancer classification

M. Ragan, S. Srihari, A. T. Fard, 2015, 1505.04846.

Research resource: nuclear receptors as transcriptome: discriminant and prognostic value in breast cancer.

Melissa J. Davis, K. Byth, S. Loi, 2013, Molecular endocrinology.

Identifying genetic vulnerabilities in cancers driven by defects in DNA-damage response

L. Wong, M. Ragan, K. Khanna, 2016 .

Inferring synthetic lethal interactions from mutual exclusivity of genetic events in cancer

L. Wong, M. Ragan, Jitin Singla, 2015, Biology Direct.

Complex-based analysis of dysregulated cellular processes in cancer

Chao Liu, Mark A. Ragan, Sriganesh Srihari, 2014, BMC Systems Biology.

Systematic tracking of dysregulated modules identifies novel genes in cancer

Mark A. Ragan, Sriganesh Srihari, M. Ragan, 2013, Bioinform..

Automatic selection of reference taxa for protein-protein interaction prediction with phylogenetic profiling

Mark A. Ragan, Stefan Maetschke, Martin Simonsen, 2012, Bioinform..

Gene Ontology-driven inference of protein-protein interactions using inducers

Mark A. Ragan, Stefan Maetschke, Martin Simonsen, 2011 .

Computing Pathways to Systems Biology: Key Contributions of Computational Methods in Pathway Identification pdf

Mark A. Ragan, Sriganesh Srihari, M. Ragan, 2013, ArXiv.

Evolution and Controllability of Cancer Networks: A Boolean Perspective

Venkatesh Raman, Hon Wai Leong, Mark A. Ragan, 2013, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Advanced computing for systems biology

Mark A. Ragan, Kevin Burrage, Lindsay Hood, 2006, Briefings Bioinform..

Advanced computing for systems

Mark A. Ragan, Kevin Burrage, Lindsay Hood, 2006 .

Paired-ion reversed-phase high-performance liquid chromatography of phenol sulfates in synthetic mixtures, algal extracts and urine.

M. Ragan, M. MacKinnon, 1979, Journal of Chromatography A.

Do different surrogate methods detect lateral genetic transfer events of different relative ages?

Timothy J. Harlow, Mark A Ragan, Robert G Beiko, 2006, Trends in microbiology.

Reconciling the many faces of lateral gene transfer - Response from Ragan

M. Ragan, 2002 .

A hybrid clustering approach to recognition of protein families in 114 microbial genomes

Timothy J. Harlow, J. Peter Gogarten, Mark A. Ragan, 2004, BMC Bioinformatics.

The nuclear gene and cDNAs encoding cytosolic glyceraldehyde-3-phosphate dehydrogenase from the marine red alga Gracilaria verrucosa: cloning, characterization and phylogenetic analysis

M. Ragan, Yi-Hong Zhou, 2004, Current Genetics.

Occurrence of closely spaced genes in the nuclear genome of the agarophyte Gracilaria gracilis

M. Ragan, A. Lluisma, 2004, Journal of Applied Phycology.

The Sulfolobus solfataricus P2 genome project

C. Sensen, T. Gaasterland, M. Ragan, 1996, FEBS letters.

Bayesian and maximum likelihood phylogenetic analyses of protein sequence data under relative branch-length differences and model violation

Timothy J. Harlow, Mark A Ragan, Jessica C Mar, 2005, BMC Evolutionary Biology.

Alignment-free inference of hierarchical and reticulate phylogenomic relationships

James M. Hogan, Mark A. Ragan, Yao-ban Chan, 2017, Briefings Bioinform..

Robust Inference of Genetic Exchange Communities from Microbial Genomes Using TF-IDF

Michael A. Langston, Mark A. Ragan, Yao-ban Chan, 2017, Front. Microbiol..

Alignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer

Mark A. Ragan, Cheong Xin Chan, M. Ragan, 2016, Scientific Reports.

Phylogeny rather than ecology or lifestyle biases the construction of Escherichia coli–Shigella genetic exchange communities

M. Ragan, Elizabeth Skippington, 2012, Open Biology.

BMC Systems Biology BioMed Central Research article Protein-protein interaction as a predictor of subcellular location

Mark A. Ragan, Melissa J. Davis, Simon Wong, 2008 .

Are rRNA sequence comparisons the Rosetta stone of phylogenetics?

Mark A. Ragan, Lynn J. Rothschild, Susan A. Gerbi, 1986, Cell.

A Biochemical Phylogeny of the Protists

M. Ragan, D. Chapman, 1979 .

Signatures of selection in the coral holobiont reveal complex adaptations to inshore environments driven by Holocene climate change

P. Bongaerts, M. Ragan, O. Simakov, 2020, bioRxiv.

Paul Greenfield, Mark A. Ragan, Cheong Xin Chan, 2017, mSystems.

The network of life: genome beginnings and evolution

James O. McInerney, Mark A. Ragan, James A. Lake, 2009, Philosophical Transactions of the Royal Society B: Biological Sciences.

The Lobster Parasite Anophryoides haemophila (Scuticociliatida: Orchitophryidae): Nuclear 18S rDNA Sequence, Phylogeny and Detection Using Oligonucleotide Primers

M. Ragan, R. Singh, C. Murphy, 1996, The Journal of eukaryotic microbiology.

A new species of Burkholderia isolated from sugarcane roots promotes plant growth

M. Ragan, P. Hugenholtz, T. Lonhienne, 2013, Microbial biotechnology.

The metastasis suppressor RARRES3 as an endogenous inhibitor of the immunoproteasome expression in breast cancer cells

M. Ragan, K. Khanna, M. Kalimutho, 2017, Scientific Reports.

Pattern-Based Phylogenetic Distance Estimation and Tree Reconstruction

Mark A. Ragan, Isidore Rigoutsos, Michael Höhl, 2006, Evolutionary bioinformatics online.

Towards a Large Integrated Model of Signal Transduction and Gene Regulation Events in Mammalian Cells

Mark A. Ragan, Lars K. Nielsen, Liam G. Fearnley, 2014, BIOINFORMATICS.

Publisher Correction: Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis

Timothy G. Stephens, P. Bongaerts, M. Ragan, 2018, Communications Biology.

Close relationship between coral-associated Chromera strains despite major differences within the Symbiodiniaceae

E. Ball, M. Ragan, Amin R. Mohamed, 2019, bioRxiv.

Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions

Timothy G. Stephens, M. Ragan, D. Bhattacharya, 2018, Scientific Reports.

Yeast as a Biofertilizer Alters Plant Growth and Morphology

M. Ragan, P. Hugenholtz, T. Lonhienne, 2014 .

A visual framework for sequence analysis using n-grams and spectral rearrangement

Mark A. Ragan, Stefan Maetschke, Karin S. Kassahn, 2010, Bioinform..

The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome

E. Ball, M. Ragan, B. Willis, 2016, Molecular ecology.

Variant forms of a self-splicing group i introns in nuclear small-subunit rrna genes (18s rdna) of the marine red alga porphyra spiralis var. Amplifolia

M. Ragan, M. C. Oliveira, 1994 .

Nucleotide sequences of 18S ribosomal RNA genes from the red algae Gracilaria tikvahiae McLachlan, Gracilaria verrucosa (Hudson) Papenfuss and Gracilariopsis sp

Carolyn J. Bird, Ellen L. Rice, Colleen A. Murphy, 1990, Nucleic Acids Res..

Genome Evolution of Coral Reef Symbionts as Intracellular Residents.

M. Ragan, D. Bhattacharya, C. Chan, 2019, Trends in ecology & evolution.

Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis

Timothy G. Stephens, P. Bongaerts, M. Ragan, 2018, Communications Biology.

Signatures of adaptation and symbiosis in genomes and transcriptomes of Symbiodinium

M. Ragan, C. Chan, Raúl A. González-Pech, 2017, Scientific Reports.

Visualization of image data from cells to

Anne E Carpenter, Mark A. Ragan, Anne E. Carpenter, 2010 .

The 18S rRNA gene sequences of four commercially important seaweeds

M. Ragan, C. Murphy, C. J. Bird, 2004, Journal of Applied Phycology.

The MRP Method

Mark A. Ragan, Bernard R. Baum, M. Ragan, 2004 .

The use of concept maps during knowledge elicitation in ontology development processes – the nutrigenomics use case

Chris F. Taylor, Alexander García Castro, Mark A. Ragan, 2006, BMC Bioinformatics.

The 16S-like, 5.8S and 23S-like rRNAs of the two varieties of Cryptococcus neoformans: sequence, secondary structure, phylogenetic analysis and restriction fragment polymorphisms.

A. Casadevall, R. Gutell, M. Ragan, 1994, Journal of medical and veterinary mycology : bi-monthly publication of the International Society for Human and Animal Mycology.

IllouraTM: a software tool for analysis, visualization and semantic querying of cellular and other spatial biological data

Mark A. Ragan, Tim McComb, Brad J. Marsh, 2009, Bioinform..

Cryptic diversity masks ecologically distinct coral species on tropical reefs

P. Bongaerts, O. Hoegh‐Guldberg, M. Ragan, 2020, bioRxiv.

Phylogeny rather than ecology or lifestyle biases the construction of Escherichia coli–Shigella genetic exchange communities

M. Ragan, Elizabeth Skippington, Elizabeth Skippington, 2012, Open Biology.

Crosstalk between sugarcane and a plant-growth promoting Burkholderia species

M. Ragan, P. Hugenholtz, T. Lonhienne, 2016, Scientific Reports.

Automatic, context-specific generation of Gene Ontology slims

Mark A. Ragan, Muhammad Shoaib B. Sehgal, Melissa J. Davis, 2010, BMC Bioinformatics.

Plant-wide nomenclature of nuclear genes encoding cytosolic and chloroplast glyceraldehyde-3-phosphate dehydrogenases

M. Ragan, H. Bohnert, M. Sachs, 1994, Plant Molecular Biology Reporter.

Reply to A. G. Rodrigo's "A Comment on Baum's Method for Combining Phylogenetic Trees"

M. Ragan, B. Baum, 1993 .

The nuclear 18S ribosomal RNA gene of the red alga Hildenbrandia rubra contains a group I intron.

M. Ragan, R. Singh, C. J. Bird, 1993, Nucleic Acids Research.

Genome assemblies and the associated annotations for seven Symbiodinium isolates

M. Ragan, D. Bhattacharya, C. Chan, 2021 .

INsPeCT: INtegrative Platform for Cancer Transcriptomics

Mark A. Ragan, Antonio Reverter, Stefan R. Maetschke, 2014, Cancer informatics.

A Semantic Web Ontology for Small Molecules and Their Biological Targets

Mark A. Ragan, Joo-Young Choi, Melissa J. Davis, 2010, J. Chem. Inf. Model..

Integrating Hierarchical Controlled Vocabularies With OWL Ontology: A Case Study from the Domain of Molecular Interactions

Jane Hunter, Imran Khan, Mark A. Ragan, 2008, APBC.

Visualization of image data from cells to organisms

Anne E Carpenter, J. Ellenberg, M. Bastin, 2010, Nature Methods.

Chemical constituents of the physodes of brown algae. Characterization by 1H and 13C nuclear magnetic resonance spectroscopy of oligomers of phloroglucinol from Fucus vesiculosus (L.)

M. Ragan, A. Mcinnes, J. Walter, 1977 .

Oligomeric polyphloroglucinols from Fucus vesiculosus: Photoplate mass spectrometric investigation

M. Ragan, W. Jamieson, 1982 .

1,2,3,5-tetrahydroxybenzene 2,5-disulfate ester: The “phenolic precursor” in gelbstoff-forming exudates from the marine brown alga Ascophyllum nodosum (L.) Lejol.

M. Ragan, A. Jensen, 1978 .

Whole-genome sequencing reveals clinically relevant insights into the aetiology of familial breast cancers

J. Pearson, A. Spurdle, S. Nik-Zainal, 2019, Annals of oncology : official journal of the European Society for Medical Oncology.

Organizational characteristics and information content of an archaeal genome: 156kb of sequence from Sulfolobus solfataricus P2

C. Sensen, W. Doolittle, H. Klenk, 1996, Molecular microbiology.

2. Introduction

M. Ragan, Elizabeth Skippington, 2017, Types of Christian Theology.

Automatic, context-specific generation of Gene

Mark A. Ragan, Melissa J. Davis, Muhammad Shoaib, 2010 .

Visualization of image data from cells to organisms

Anne E Carpenter, J. Ellenberg, M. Bastin, 2010, Nature Methods.

Yeast rises to the occasion

M. Ragan, 2013, eLife.

Genetic analyses of 15 species of yeast have shed new light on the divergence of gene regulation during evolution, with significant changes occurring after an event in which a whole genome was duplicated.

Courtney E. French, M. Ragan, Sushmita Roy, 2013 .

Symbiodinium genomes reveal adaptive evolution of functions related to symbiosis

Timothy G. Stephens, P. Bongaerts, M. Ragan, 2017, bioRxiv.

Deciphering the nature of the coral–Chromera association

E. Ball, M. Ragan, N. Satoh, 2018, The ISME Journal.

2. Introduction

M. Ragan, Elizabeth Skippington, 2022 .

Quadratic Kernelization for Convex Recoloring of Trees

Michael R. Fellows, Michael A. Langston, Mark A. Ragan, 2007, Algorithmica.

Connected Coloring Completion for General Graphs: Algorithms and Complexity

Michael R. Fellows, Sagi Snir, Mark A. Ragan, 2007, COCOON.

Visualization of image data from cells to organisms

Anne E Carpenter, M. Ragan, Thomas Walter, 2010, Nature Methods.

Gene regulatory network inference: evaluation and application to ovarian cancer allows the prioritization of drug targets

Melissa J. Davis, P. Madhamshettiwar, S. Maetschke, 2012, Genome Medicine.

Breast cancer classification: linking molecular mechanisms to disease

M. Ragan, S. Srihari, 2014 .

Breast cancer classification: linking molecular mechanisms to disease prognosis

Mark A. Ragan, Sriganesh Srihari, M. Ragan, 2015, Briefings Bioinform..

Next-generation phylogenomics

M. Ragan, C. Chan, 2013, Biology Direct.

Detecting recombination in evolving nucleotide sequences

M. Ragan, R. Beiko, Cheong Xin Chan, 2006, BMC Bioinformatics.

Clustering evolving proteins into homologous families

Mark A. Ragan, Cheong Xin Chan, Maisarah Mahbob, 2013, BMC Bioinformatics.

A two-phase approach for detecting recombination in nucleotide sequences

Mark A. Ragan, Robert G. Beiko, Cheong Xin Chan, 2007, 0709.1874.

A two-phase strategy for detecting recombination in nucleotide sequences

Mark A. Ragan, Robert G. Beiko, Cheong Xin Chan, 2007, South Afr. Comput. J..

Benchmarking the Detection and Analysis of Recombination

Mark A. Ragan, Robert G. Beiko, Cheong Xin Chan, 2004, ISMB 2004.

Gene Ontology-driven inference of protein-protein interactions using inducers

Melissa J. Davis, S. Maetschke, M. Ragan, 2012, Bioinform..

Bioinformatics

M. Ragan, 2019, Advanced Methodologies and Technologies in Medicine and Healthcare.

Functional implications of the emergence of alternative splicing in hnRNP A/B transcripts.

M. Ragan, Adam Skarshewski, J. Rothnagel, 2010, RNA.

Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions

Timothy G. Stephens, M. Ragan, D. Bhattacharya, 2018, Scientific Reports.