M. Padi

发表

Interpreting cancer genomes using systematic host perturbations by tumour virus proteins

Rahul C. Deo, James T. Webber, Alyce A. Chen, 2012, Nature.

Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins - eScholarship

Rahul C. Deo, James T. Webber, Alyce A. Chen, 2012 .

Integration of TP53, DREAM, MMB-FOXM1 and RB-E2F target gene analyses identifies cell cycle gene regulatory networks

P. Grossmann, M. Padi, J. Decaprio, 2016, Nucleic acids research.

Detecting phenotype-driven transitions in regulatory network structure

John Quackenbush, Megha Padi, John Quackenbush, 2018, npj Systems Biology and Applications.

Phenotype-driven transitions in regulatory network structure

John Quackenbush, M. Padi, 2017, bioRxiv.

Effects of ursodeoxycholic acid on the gut microbiome and colorectal adenoma development

Nicholas A. Bokulich, D. Alberts, M. Padi, 2019, Cancer medicine.

Warped AdS3 black holes

M. Padi, Wei Song, A. Strominger, 2008, 0807.3040.

Breast tumor stiffness instructs bone metastasis via mechanical memory

D. Cusanovich, M. Padi, G. Mouneimne, 2019, bioRxiv.

Generating Ensembles of Gene Regulatory Networks to Assess Robustness of Disease Modules

M. Padi, Adam Grant, James T. Lim, 2021, Frontiers in Genetics.

The Network Zoo: a multilingual package for the inference and analysis of biological networks

Deborah A. Weighill, Marouen Ben Guebila, D. DeMeo, 2022, bioRxiv.

Controllability in an islet specific regulatory network identifies the transcriptional factor NFATC4, which regulates Type 2 Diabetes associated genes

A. Barabasi, E. Silverman, L. Groop, 2017, bioRxiv.

Interrogating Mutant Allele Expression via Customized Reference Genomes to Define Influential Cancer Mutations

M. Padi, E. Knudsen, A. Witkiewicz, 2019, Scientific Reports.

Interrogating Mutant Allele Expression via Customized Reference Genomes to Define Influential Cancer Mutations

M. Padi, E. Knudsen, A. Witkiewicz, 2018, Scientific Reports.

Randomized Crossover Trial Evaluating Detoxification of Tobacco Carcinogens by Broccoli Seed and Sprout Extract in Current Smokers

M. Padi, E. Szabo, J. Bauman, 2022, Cancers.

Intersubband transitions in bismuth nanowires

M. Dresselhaus, M. Padi, G. Dresselhaus, 2000 .

Canonical NF-κB Activation Is Essential for Epstein-Barr Virus Latent Membrane Protein 1 TES2/CTAR2 Gene Regulation

John Quackenbush, E. Kieff, M. Padi, 2011, Journal of Virology.

Viral Perturbations of Host Networks Reflect Disease Etiology

Deok-Sun Lee, Albert-László Barabási, John Quackenbush, 2012, PLoS Comput. Biol..

Supplementary Material 23

Albert-László Barabási, John Quackenbush, Rahul C. Deo, 2012 .

Synthesis and characterization of cobalt–nickel alloy nanowires

P. Ajayan, M. Padi, R. Vajtai, 2009 .

, Protein 1 TES 2 / CTAR 2 Gene Regulation Epstein-Barr Virus Latent Membrane B Activation Is Essential for κ

John Quackenbush, E. Kieff, M. Padi, 2011 .

Controllability in an islet specific regulatory network identifies the transcriptional factor NFATC4, which regulates Type 2 Diabetes associated genes

Albert-László Barabási, Marc Vidal, Megha Padi, 2017, npj Systems Biology and Applications.

Orientiholes The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters

M. Padi, F. Denef, M. Esole, 2009 .

Joint inference of transcription factor activity and context-specific regulatory networks

M. Padi, Chen Chen, 2022, bioRxiv.

Molecular drivers of tumor progression in microsatellite stable APC mutation-negative colorectal cancers

M. Padi, N. Ellis, B. Salhia, 2021, Scientific Reports.

Non-supersymmetric attractor flow in symmetric spaces

M. Padi, Wei Li, D. Gaiotto, 2007, 0710.1638.

Generating Ensembles of Gene Regulatory Networks to Assess Robustness of Disease Modules

Megha Padi, James T. Lim, Chen Chen, 2020, bioRxiv.

EVL and MIM/MTSS1 regulate actin cytoskeletal remodeling to promote dendritic filopodia in developing neurons

M. Padi, G. Mouneimne, A. Wang, 2021, bioRxiv.

Nac1 Coordinates a Sub-network of Pluripotency Factors to Regulate Embryonic Stem Cell Differentiation.

John Quackenbush, J. Gunawardena, A. Martinez-Arias, 2016, Cell reports.

Merkel cell polyomavirus recruits MYCL to the EP400 complex to promote oncogenesis

Benjamin J. Strober, Alexander J. Federation, J. Bradner, 2017, PLoS pathogens.

Breast tumor stiffness instructs bone metastasis via maintenance of mechanical conditioning

D. Cusanovich, M. Padi, G. Mouneimne, 2021, Cell reports.

Merkel Cell Polyomavirus Small T Antigen Promotes Pro-Glycolytic Metabolic Perturbations Required for Transformation

G. Stephanopoulos, John Quackenbush, M. Padi, 2016, PLoS pathogens.

Cell intrinsic signaling in MEN1 mutant pancreatic neuroendocrine tumors unveils novel signaling pathways associated with de-differentiation

M. Padi, R. Heimark, T. Jie, 2020, bioRxiv.

The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks

Abhijeet R. Sonawane, J. Quackenbush, M. Padi, 2023, Genome Biology.

Detecting phenotype-driven transitions in regulatory network structure

John Quackenbush, M. Padi, 2018, npj Systems Biology and Applications.

The CHR promoter element controls cell cycle-dependent gene transcription and binds the DREAM and MMB complexes

M. Padi, L. Litovchick, J. Decaprio, 2011, Nucleic acids research.

Nac 1 Coordinates a Sub-n etwork of Pluripotency Factors to Regulate Embryonic Stem Cell Differentiation Graphical

John Quackenbush, J. Gunawardena, A. Martinez-Arias, 2016 .

GLUT3/SLC2A3 Is an Endogenous Marker of Hypoxia in Prostate Cancer Cell Lines and Patient-Derived Xenograft Tumors

G. C. Rogers, M. Padi, A. Cress, 2022, Diagnostics.

Higher-order corrections to mass-charge relation of extremal black holes

L. Motl, M. Padi, Y. Kats, 2006, hep-th/0606100.

Identification of FAM111A as an SV40 Host Range Restriction and Adenovirus Helper Factor

Marc Vidal, Megha Padi, Jarrod A. Marto, 2012, PLoS pathogens.

PIM Kinase Inhibitors Block the Growth of Primary T-cell Acute Lymphoblastic Leukemia: Resistance Pathways Identified by Network Modeling Analysis

E. Petricoin, M. Padi, D. Teachey, 2020, Molecular Cancer Therapeutics.

Integrating transcriptional and protein interaction networks to prioritize condition-specific master regulators

John Quackenbush, Megha Padi, John Quackenbush, 2015, BMC Systems Biology.

Controllability in an islet specific regulatory network identifies the transcriptional factor NFATC4, which regulates Type 2 Diabetes associated genes

A. Barabasi, E. Silverman, L. Groop, 2017, npj Systems Biology and Applications.

Abstract 484: Molecular drivers of tumor progression in microsatellite stable APC mutation-negative colorectal cancers

M. Padi, N. Ellis, B. Salhia, 2022, Cancer Research.

Flexible modeling of regulatory networks improves transcription factor activity estimation

M. Padi, Chen Chen, 2024, NPJ systems biology and applications.