M. Hughes

发表

The network as the target

J. Baggs, M. Hughes, J. Hogenesch, 2010, Wiley interdisciplinary reviews. Systems biology and medicine.

Brain-Specific Rescue of Clock Reveals System-Driven Transcriptional Rhythms in Peripheral Tissue

John B. Hogenesch, Michael E. Hughes, Joseph S. Takahashi, 2012, PLoS genetics.

JTK_CYCLE: An Efficient Nonparametric Algorithm for Detecting Rhythmic Components in Genome-Scale Data Sets

Karl Kornacker, Michael E Hughes, M. Hughes, 2010, Journal of biological rhythms.

A circadian gene expression atlas in mammals: Implications for biology and medicine

M. Hughes, J. Hogenesch, N. Lahens, 2014, Proceedings of the National Academy of Sciences.

Basal-epithelial stem cells cross an alarmin checkpoint for post-viral lung disease.

Samantha A. Morris, Christy M. Hoffmann, Shamus P. Keeler, 2021, The Journal of clinical investigation.

Machine Learning Helps Identify CHRONO as a Circadian Clock Component

John B. Hogenesch, Julie E. Baggs, Ron C. Anafi, 2014, PLoS biology.

The growth and impact of Alzheimer disease centers as measured by social network analysis.

J. Trojanowski, M. Hughes, J. Hogenesch, 2014, JAMA neurology.

Harmonics of Circadian Gene Transcription in Mammals

Satchidananda Panda, Kevin R. Hayes, John B. Hogenesch, 2009, PLoS genetics.

The circadian clock interacts with metabolic physiology to influence reproductive fitness.

A. Sehgal, M. Hughes, J. Hogenesch, 2011, Cell metabolism.

Considerations for RNA-seq analysis of circadian rhythms.

M. Hughes, J. Hogenesch, G. Grant, 2015, Methods in enzymology.

O-GlcNAc signaling entrains the circadian clock by inhibiting BMAL1/CLOCK ubiquitination.

Steven P Jones, M. Hughes, M. Nitabach, 2013, Cell metabolism.

Genome-wide studies of time of day in the brain: Design and analysis

M. Hughes, J. Hogenesch, M. Ruben, 2020 .

Achilles is a circadian clock-controlled gene that regulates immune function in Drosophila

M. Hughes, JiaJia Li, Erin E Terry, 2017, Brain, Behavior, and Immunity.

Daily oscillations in expression and responsiveness of Toll-like receptors in splenic immune cells

M. Hughes, M. Nitabach, E. Fikrig, 2018, Heliyon.

Transcriptional profiling reveals extraordinary diversity among skeletal muscle tissues

Scott A Lewis, Michael E Hughes, Christy M. Hoffmann, 2017, bioRxiv.

Deep sequencing the circadian and diurnal transcriptome of Drosophila brain

Michael E Hughes, Gregory R Grant, Michael N Nitabach, 2012, Genome research.

The daily rhythms of mitochondrial gene expression and oxidative stress regulation are altered by aging in the mouse liver

M. Hughes, Xiaodong Li, Zhiyin Song, 2015, Chronobiology international.

brain Drosophila Deep sequencing the circadian and diurnal transcriptome of Material Supplemental

M. Hughes, M. Nitabach, G. Grant, 2012 .

Circadian Rhythms Influence the Severity of Sepsis in Mice via a TLR2-Dependent, Leukocyte-Intrinsic Mechanism

M. Hughes, E. Fikrig, W. Walker, 2018, The Journal of Immunology.

Guidelines for Genome-Scale Analysis of Biological Rhythms

Pierre Baldi, Andrew J. Millar, Francis J. Doyle, 2017, Journal of biological rhythms.

Network Dynamics to Evaluate Performance of an Academic Institution

Michael E Hughes, M. Hughes, J. Hogenesch, 2010, Science Translational Medicine.

MetaCycle: an integrated R package to evaluate periodicity in large scale data

Gang Wu, Michael Hughes, John B. Hogenesch, 2016, bioRxiv.

ExpressionDB: An open source platform for distributing genome-scale datasets

Laura D Hughes, Scott A Lewis, Michael E Hughes, 2017, PloS one.

Tidal and diel orchestration of behaviour and gene expression in an intertidal mollusc

M. Hughes, M. Salmon-Divon, O. Levy, 2018, Scientific Reports.

Circadian expression of clock genes in mouse macrophages, dendritic cells, and B cells

M. Hughes, M. Nitabach, E. Fikrig, 2012, Brain, Behavior, and Immunity.

Age-Associated Disruption of Molecular Clock Expression in Skeletal Muscle of the Spontaneously Hypertensive Rat

M. Hughes, K. Esser, C. Balke, 2011, PloS one.

Calcitonin Gene-Related Peptide Neurons Mediate Sleep-Specific Circadian Output in Drosophila

M. Hughes, Davide Raccuglia, M. Nitabach, 2014, Current Biology.

Achilles-Mediated and Sex-Specific Regulation of Circadian mRNA Rhythms in Drosophila

B. Chen, M. Hughes, JiaJia Li, 2019, Journal of biological rhythms.

An alternative mechanism for skeletal muscle dysfunction in long-term post-viral lung disease

Christy M. Hoffmann, Shamus P. Keeler, M. Hughes, 2022, bioRxiv.