X. Zhang

发表

Analysis of protein surface patterns by pocket similarity network.

Luonan Chen, Zhiping Liu, Ling-Yun Wu, 2008, Protein and peptide letters.

The knowledge-integrated network biomarkers discovery for major adverse cardiac events.

Stephen T. C. Wong, Luonan Chen, Xiaobo Zhou, 2008, Journal of proteome research.

Protein cavity clustering based on community structure of pocket similarity network

Zhi-Ping Liu, Luonan Chen, Xiang-Sun Zhang, 2008, Int. J. Bioinform. Res. Appl..

Revealing divergent evolution, identifying circular permutations and detecting active-sites by protein structure comparison

Luonan Chen, Shihua Zhang, Ling-Yun Wu, 2006, BMC Structural Biology.

Discovering functions and revealing mechanisms at molecular level from biological networks

Luonan Chen, Shihua Zhang, G. Jin, 2007, Proteomics.

Identification of overlapping community structure in complex networks using fuzzy c-means clustering

Shihua Zhang, X. Zhang, Rui-Sheng Wang, 2007 .

Biomolecular Networks: Methods and Applications in Systems Biology

Luonan Chen, X. Zhang, Rui-Sheng Wang, 2009 .

iPcc: a novel feature extraction method for accurate disease class discovery and prediction

Yong Wang, X. Zhang, X. Ren, 2013, Nucleic acids research.

ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions

Luonan Chen, Yong Wang, X. Zhang, 2012, Nucleic acids research.

Determining modular organization of protein interaction networks by maximizing modularity density

Chris H. Q. Ding, Shi-Hua Zhang, Xiang-Sun Zhang, 2010, BMC Systems Biology.

Prediction of hot spots in protein interfaces using a random forest model with hybrid features.

Xiang-Sun Zhang, Luonan Chen, Zhi-Ping Liu, 2012, Protein engineering, design & selection : PEDS.

An Adaptive Neural Network Model for Nonlinear Programming Problems

X. Zhang, Z. Jing, X. Zhuo, 2002 .

Breast tumor subgroups reveal diverse clinical prognostic power

Xiang-Sun Zhang, Shihua Zhang, Zhaoqi Liu, 2014, Scientific Reports.

Computational Models for Condition‐Specific Gene and Pathway Inference

Luonan Chen, Shihua Zhang, X. Zhang, 2010 .

On Rosen's gradient projection methods

D. Du, X. Zhang, F. Wu, 1990 .

Models and Algorithms for Haplotyping Problem

Luonan Chen, Ling-Yun Wu, X. Zhang, 2006 .

Uncovering fuzzy community structure in complex networks.

Shihua Zhang, X. Zhang, Rui-Sheng Wang, 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.

Discovery of cell-type specific regulatory elements in the human genome using differential chromatin modification analysis

C. Chen, Shihua Zhang, X. Zhang, 2013, Nucleic acids research.

A Framework for Structural Similarity Search in Proteins

Shihua Zhang, X. Zhang, De-Gang Liu, 2006 .

Inferring transcriptional interactions and regulator activities from experimental data.

Xiang-Sun Zhang, Rui-Sheng Wang, Luonan Chen, 2007, Molecules and cells.

De novo prediction of RNA-protein interactions from sequence information.

Xiang-Sun Zhang, Yong Wang, Runsheng Chen, 2013, Molecular bioSystems.

Protein evolution in yeast transcription factor subnetworks

Yu Xia, Yong Wang, Xiang-Sun Zhang, 2010, Nucleic acids research.

Predicting eukaryotic transcriptional cooperativity by Bayesian network integration of genome-wide data

Xiang-Sun Zhang, Yong Wang, Yu Xia, 2009, Nucleic acids research.

Exploring the constrained maximum edge-weight connected graph problem

Xiang-Sun Zhang, Luonan Chen, Shihua Zhang, 2009 .

Cancer stem cells display extremely large evolvability: alternating plastic and rigid networks as a potential Mechanism: network models, novel therapeutic target strategies, and the contributions of hypoxia, inflammation and cellular senescence.

Daniel V. Veres, Kristof Z. Szalay, P. Csermely, 2013, Seminars in cancer biology.

Bridging protein local structures and protein functions

Xiang-Sun Zhang, Yong Wang, Ling-Yun Wu, 2008, Amino Acids.

A Flexible Convex Optimization Model for Semi-supervised Clustering with Instance-level Constraints

Yong Wang, X. Zhang, X. Ren, 2011 .

An Optimization Model for Fuzzy Binary Clustering

Yong Wang, X. Zhang, X. Ren, 2010 .

Hubs with Network Motifs Organize Modularity Dynamically in the Protein-Protein Interaction Network of Yeast

Xiang-Sun Zhang, Guangxu Jin, Luonan Chen, 2007, PloS one.

Chinese a Nti鄄 Cancer a Ssociation

Ling-Yun Wu, Yong Wang, X. Zhang, 2022 .

A Stochastic Inventory Placement Model for a Multi-echelon Seasonal Product Supply Chain with Multiple Retailers∗

X. Zhang, Ji-hong Zhang, Jing Chen, 2006 .

A SVC-based Method to Detect Multi-scalar Noisy Communities in Complex Networks ∗

X. Zhang, Jiguang Wang, Junfei Zhao, 2011 .

Potts model based on a Markov process computation solves the community structure problem more theoretically and effectively

Ling-Yun Wu, Yong Wang, X. Zhang, 2015 .

Identification of overlapping communities in protein interaction networks using multi-scale local information expansion

Luonan Chen, Zhiping Liu, X. Zhang, 2012, Proceedings of the 10th World Congress on Intelligent Control and Automation.

Mass flow model and essentiality of enzymes in metabolic networks

X. Zhang, Rui-Sheng Wang, Zhen-Ping Li, 2008 .

Biomolecular network querying: a promising approach in systems biology

Shi-Hua Zhang, Luonan Chen, Xiang-Sun Zhang, 2008, BMC Systems Biology.

Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases

Shi-Hua Zhang, Luonan Chen, Xiang-Sun Zhang, 2009, PLoS Comput. Biol..

Effects of Multiple Probesets in Affymetrix GeneChips on Identifying Differentially Expressed Genes in iPS Cells

Zhiping Liu, X. Zhang, Xiang-Sun Zhang, 2010 .

Two Improvements of NMF Used for Tumor Clustering ∗

X. Zhang, Zhong-Yuan Zhang, 2007 .

New Insights into Network Motif Clusters from the Views of Cellular Localizations and Signal Pathways ∗

Luonan Chen, Shihua Zhang, G. Jin, 2007 .

Haplotype reconstruction from SNP fragments by minimum error correction

Xiang-Sun Zhang, Ling-Yun Wu, Zhen-Ping Li, 2005, Bioinform..

Evaluating the denoising techniques in protein-protein interaction prediction

X. Zhang, N. Deng, X. Ren, 2011, 2011 IEEE International Conference on Systems Biology (ISB).

Network‐Based Prediction of Protein Function

Luonan Chen, Xiang-Sun Zhang, Rui-Sheng Wang, 2009 .

A Novel Approach for Pathway Inference Based on Network Flow ∗

X. Zhang, X. Ren, 2009 .

On Resolution Limit of the Modularity in Community Detection

X. Zhang, Junhua Zhang, 2010 .