Tao Huang

发表

Selection of reprogramming factors of induced pluripotent stem cells based on the protein interaction network and functional profiles.

K. Chou, Yu-Dong Cai, Lele Hu, 2012, Protein and peptide letters.

Decipher the connections between proteins and phenotypes.

Tao Huang, Xiaohui Ren, Steven Wang, 2020, Biochimica et biophysica acta. Proteins and proteomics.

Deciphering the Relationship between Obesity and Various Diseases from a Network Perspective

Yu-Dong Cai, Tao Huang, Lei Chen, 2017, Genes.

Prediction of Multi-Type Membrane Proteins in Human by an Integrated Approach

Lei Chen, Tao Huang, Yu-Dong Cai, 2014, PloS one.

Predicting and analyzing early wake-up associated gene expressions by integrating GWAS and eQTL studies.

Tao Huang, Tao Huang, Jiarui Li, 2017, Biochimica et biophysica acta. Molecular basis of disease.

Predicting Functions of Proteins in Mouse Based on Weighted Protein-Protein Interaction Network and Protein Hybrid Properties

Kuo-Chen Chou, Tao Huang, Yu-Dong Cai, 2011, PloS one.

Identification of the copy number variant biomarkers for breast cancer subtypes

Xiaoyong Pan, Lei Chen, Tao Huang, 2018, Molecular Genetics and Genomics.

Identification of Differentially Expressed Genes between Original Breast Cancer and Xenograft Using Machine Learning Algorithms

Lei Chen, Tao Huang, Yu-Dong Cai, 2018, Genes.

Prediction and Analysis of Protein Hydroxyproline and Hydroxylysine

Yu-Dong Cai, Xiaohe Shi, Lele Hu, 2010, PloS one.

A computational method using the random walk with restart algorithm for identifying novel epigenetic factors

Yu-Dong Cai, Xiangyin Kong, Tao Huang, 2018, Molecular Genetics and Genomics.

Prediction of protein-peptide interaction with nearest neighbor algorithm

Yu-Dong Cai, Tao Huang, Yu-Hang Zhang, 1969 .

Predicting A-to-I RNA Editing by Feature Selection and Random Forest

Yu-Dong Cai, Xiangyin Kong, Tao Huang, 2014, PloS one.

Prediction of Protein-Protein Interaction Sites by Random Forest Algorithm with mRMR and IFS

Yu-Dong Cai, Tao Huang, Lei Chen, 2012, PloS one.

Identification of Colorectal Cancer Related Genes with mRMR and Shortest Path in Protein-Protein Interaction Network

K. Chou, Yu-Dong Cai, Tao Huang, 2012, PloS one.

Prediction of Deleterious Non-Synonymous SNPs Based on Protein Interaction Network and Hybrid Properties

Yu-Dong Cai, ZhiSong He, Lele Hu, 2010, PloS one.

Finding Candidate Drugs for Hepatitis C Based on Chemical-Chemical and Chemical-Protein Interactions

Yu-Dong Cai, Tao Huang, Lei Chen, 2014, PloS one.

Analysis and Prediction of the Metabolic Stability of Proteins Based on Their Sequential Features, Subcellular Locations and Interaction Networks

K. Chou, Yu-Dong Cai, ZhiSong He, 2010, PloS one.

Classification of Non-Small Cell Lung Cancer Based on Copy Number Alterations

Yu-Dong Cai, Tao Huang, Bi-Qing Li, 2014, PloS one.

Classification and Analysis of Regulatory Pathways Using Graph Property, Biochemical and Physicochemical Property, and Functional Property

Kuo-Chen Chou, Lei Chen, Tao Huang, 2011, PloS one.

Prediction of lysine ubiquitination with mRMR feature selection and analysis

Tao Huang, Lu Xie, Yudong Cai, 2011, Amino Acids.

Discriminating between Lysine Sumoylation and Lysine Acetylation Using mRMR Feature Selection and Analysis

Lei Chen, Tao Huang, Yu-Dong Cai, 2014, PloS one.

Prediction and analysis of cell-penetrating peptides using pseudo-amino acid composition and random forest models

Chen Chu, Lei Chen, Tao Huang, 2015, Amino Acids.

Identifying Chemicals with Potential Therapy of HIV Based on Protein-Protein and Protein-Chemical Interaction Network

Bing Niu, Lei Chen, Tao Huang, 2013, PloS one.

Hepatitis C Virus Network Based Classification of Hepatocellular Cirrhosis and Carcinoma

Kuo-Chen Chou, Hanry Yu, Tao Huang, 2012, PloS one.

Discriminating cirRNAs from other lncRNAs using a hierarchical extreme learning machine (H-ELM) algorithm with feature selection

Xiaoyong Pan, Lei Chen, Tao Huang, 2017, Zeitschrift für Induktive Abstammungs- und Vererbungslehre.

Identifying luminal and basal mammary cell specific genes and their expression patterns during pregnancy

Xiangtian Yu, Tao Zeng, Tao Huang, 2022, PloS one.

Identification of Protein Subcellular Localization With Network and Functional Embeddings

Tao Zeng, Yu-Dong Cai, Tao Huang, 2021, Frontiers in Genetics.

Identifying the RNA signatures of coronary artery disease from combined lncRNA and mRNA expression profiles.

Tao Zeng, Yu-Dong Cai, Tao Huang, 2020, Genomics.

Identifying Transcriptomic Signatures and Rules for SARS-CoV-2 Infection

Tao Zeng, Yu-Dong Cai, Tao Huang, 2021, Frontiers in Cell and Developmental Biology.

Detecting the Multiomics Signatures of Factor-Specific Inflammatory Effects on Airway Smooth Muscles

Tao Zeng, Yu-Dong Cai, Tao Huang, 2021, Frontiers in Genetics.

Discriminating Origin Tissues of Tumor Cell Lines by Methylation Signatures and Dys-Methylated Rules

Tao Zeng, Yu-Dong Cai, Tao Huang, 2020, Frontiers in Bioengineering and Biotechnology.

Investigating the gene expression profiles of cells in seven embryonic stages with machine learning algorithms.

Yu-Dong Cai, Tao Huang, Lei Chen, 2020, Genomics.

Identifying Cell-Type Specific Genes and Expression Rules Based on Single-Cell Transcriptomic Atlas Data

Tao Zeng, Yu-Dong Cai, Tao Huang, 2020, Frontiers in Bioengineering and Biotechnology.

Identifying Robust Microbiota Signatures and Interpretable Rules to Distinguish Cancer Subtypes

Tao Zeng, Yu-Dong Cai, Tao Huang, 2020, Frontiers in Molecular Biosciences.

New computational tool based on machine-learning algorithms for the identification of rhinovirus infection-related genes.

Xiaoyong Pan, Tao Huang, Yu-Dong Cai, 2019, Combinatorial chemistry & high throughput screening.

Identification of leukemia stem cell expression signatures through Monte Carlo feature selection strategy and support vector machine

Lei Chen, Tao Huang, Yu-Dong Cai, 2019, Cancer Gene Therapy.

Identifying Methylation Pattern and Genes Associated with Breast Cancer Subtypes

Xiaoyong Pan, Lei Chen, Tao Huang, 2019, International journal of molecular sciences.

Primary Tumor Site Specificity is Preserved in Patient-Derived Tumor Xenograft Models

Xiaohua Hu, Xiaoyong Pan, Lei Chen, 2019, Front. Genet..

Analysis of Protein–Protein Functional Associations by Using Gene Ontology and KEGG Pathway

Yu-Dong Cai, Tao Huang, Lei Chen, 2019, BioMed research international.

Copy Number Variation Pattern for Discriminating MACROD2 States of Colorectal Cancer Subtypes

Tao Zeng, Yu-Dong Cai, Tao Huang, 2019, Front. Bioeng. Biotechnol..

Screening of Methylation Signature and Gene Functions Associated With the Subtypes of Isocitrate Dehydrogenase-Mutation Gliomas

Tao Zeng, Yu-Dong Cai, Tao Huang, 2019, Front. Bioeng. Biotechnol..

Identification of the Gene Expression Rules That Define the Subtypes in Glioma

Xiaoyong Pan, Lei Chen, Tao Huang, 2018, Journal of clinical medicine.

HIV infection alters the human epigenetic landscape

Xiaoyong Pan, Lei Chen, Tao Huang, 2018, Gene Therapy.

A Computational Method for Classifying Different Human Tissues with Quantitatively Tissue-Specific Expressed Genes

Lei Chen, Tao Huang, Yu-Dong Cai, 2018, Genes.

Tissue Expression Difference between mRNAs and lncRNAs

Xiaoyong Pan, Lei Chen, Tao Huang, 2018, International journal of molecular sciences.

Tissue differences revealed by gene expression profiles of various cell lines

Xiaoyong Pan, Lei Chen, Tao Huang, 2018, Journal of cellular biochemistry.

Identification and analysis of the cleavage site in a signal peptide using SMOTE, dagging, and feature selection methods.

Tao Huang, Yu-Dong Cai, Deling Wang, 2018, Molecular omics.

Identification of gene expression signatures across different types of neural stem cells with the Monte‐Carlo feature selection method

Lei Chen, Tao Huang, Yu-Dong Cai, 2018, Journal of cellular biochemistry.

Prediction and analysis of essential genes using the enrichments of gene ontology and KEGG pathways

Yu-Dong Cai, Tao Huang, Lei Chen, 2017, PloS one.

Identification of compound–protein interactions through the analysis of gene ontology, KEGG enrichment for proteins and molecular fragments of compounds

Tao Huang, Yu-Dong Cai, Yu-Hang Zhang, 2016, Molecular Genetics and Genomics.

Gene expression profiling gut microbiota in different races of humans

Lei Chen, Tao Huang, Yu-Hang Zhang, 2016, Scientific Reports.

A method to distinguish between lysine acetylation and lysine ubiquitination with feature selection and analysis

Tao Huang, Yu-Dong Cai, Ning Zhang, 2015, Journal of biomolecular structure & dynamics.

Classifying Ten Types of Major Cancers Based on Reverse Phase Protein Array Profiles

Lei Chen, Tao Huang, Yu-Dong Cai, 2015, PloS one.

Analysis of Tumor Suppressor Genes Based on Gene Ontology and the KEGG Pathway

Lei Chen, Tao Huang, Yu-Dong Cai, 2014, PloS one.

Prediction of Metabolic Pathway Using Graph Property, Chemical Functional Group and Chemical Structural Set

Lei Chen, Tao Huang, Yu-Dong Cai, 2013 .

A computational method for the identification of candidate drugs for non-small cell lung cancer

Yu-Dong Cai, Tao Huang, Lei Chen, 2017, PloS one.

Novel Candidate Key Drivers in the Integrative Network of Genes, MicroRNAs, Methylations, and Copy Number Variations in Squamous Cell Lung Carcinoma

Yu-Dong Cai, Tao Huang, Jing Yang, 2015, BioMed research international.

Mining for novel tumor suppressor genes using a shortest path approach

Yu-Dong Cai, Xiangyin Kong, Tao Huang, 2016, Journal of biomolecular structure & dynamics.

Analysis of four types of leukemia using Gene Ontology term and Kyoto Encyclopedia of Genes and Genomes pathway enrichment scores.

Yu-Dong Cai, Tao Huang, Yu-Hang Zhang, 2020, Combinatorial chemistry & high throughput screening.

Genetic differences among ethnic groups

Tao Huang, Yu-Dong Cai, Yu-Dong Cai, 2015, BMC Genomics.

Inter- and intra-chain disulfide bond prediction based on optimal feature selection.

Yu-Dong Cai, ZhiSong He, Tao Huang, 2013, Protein and peptide letters.

Prediction of protein amidation sites by feature selection and analysis

Ning Zhang, Tao Huang, Lulu Zheng, 2013, Molecular Genetics and Genomics.

Predicting Transcriptional Activity of Multiple Site p53 Mutants Based on Hybrid Properties

Kuo-Chen Chou, Tao Huang, Yu-Dong Cai, 2011, PloS one.

A Unified 35-Gene Signature for both Subtype Classification and Survival Prediction in Diffuse Large B-Cell Lymphomas

Tao Huang, Yu-Dong Cai, Lu Xie, 2010, PloS one.

Prediction of tyrosine sulfation with mRMR feature selection and analysis.

Tao Huang, Shen Niu, Yudong Cai, 2010, Journal of proteome research.

Prediction of Pharmacological and Xenobiotic Responses to Drugs Based on Time Course Gene Expression Profiles

Tao Huang, Yu-Dong Cai, Yu-Dong Cai, 2009, PloS one.

Deciphering the effects of gene deletion on yeast longevity using network and machine learning approaches.

Kuo-Chen Chou, Lei Zhang, Lei Chen, 2012, Biochimie.

A network-based method using a random walk with restart algorithm and screening tests to identify novel genes associated with Menière's disease

Tao Huang, Yanshu Wang, Xiangyin Kong, 2017, PloS one.

Identification of Influenza A/H7N9 Virus Infection-Related Human Genes Based on Shortest Paths in a Virus-Human Protein Interaction Network

Tao Huang, Yu-Dong Cai, Ning Zhang, 2014, BioMed research international.

Detecting Brain Structure-Specific Methylation Signatures and Rules for Alzheimer’s Disease

Tao Zeng, Tao Huang, Kaiyan Feng, 2022, Frontiers in Neuroscience.

Inferring novel genes related to oral cancer with a network embedding method and one-class learning algorithms

Yu-Dong Cai, Tao Huang, Lei Chen, 2019, Gene Therapy.

Identifying Methylation Signatures and Rules for COVID-19 With Machine Learning Methods

Tao Huang, Lei Chen, Hao Li, 2022, Frontiers in Molecular Biosciences.

Unexpected Nitrogen Flow and Water Quality Change due to Varying Atmospheric Deposition

Zhenyao Shen, Lei Chen, Tao Huang, 2022, Journal of Hydrology.

A Hybrid Computational Method for the Discovery of Novel Reproduction-Related Genes

Yu-Dong Cai, Xiangyin Kong, Tao Huang, 2015, PloS one.

Dysfunctions Associated with Methylation, MicroRNA Expression and Gene Expression in Lung Cancer

Yu-Dong Cai, Xiangyin Kong, Tao Huang, 2012, PloS one.

The transcriptome difference between colorectal tumor and normal tissues revealed by single-cell sequencing

Tao Huang, Guo-liang Zhang, Jin-hai Wang, 2019, Journal of Cancer.

The Use of Gene Ontology Term and KEGG Pathway Enrichment for Analysis of Drug Half-Life

Yu-Dong Cai, Xiangyin Kong, Tao Huang, 2016, PloS one.

Identifying novel protein phenotype annotations by hybridizing protein–protein interactions and protein sequence similarities

Yu-Dong Cai, Tao Huang, Lei Chen, 2016, Molecular Genetics and Genomics.

Classification of cancers based on copy number variation landscapes.

Meng Wang, Tao Huang, Ning Zhang, 2016, Biochimica et biophysica acta.

Systems genetics - deciphering the complex disease with a systems approach.

Tao Huang, Yudong Cai, 2016, Biochimica et biophysica acta.

The Integrative Network of Gene Expression, MicroRNA, Methylation and Copy Number Variation in Colon and Rectal Cancer

Tao Huang, Yu-Dong Cai, Bi-Qing Li, 2016 .

Identification of novel candidate drivers connecting different dysfunctional levels for lung adenocarcinoma using protein-protein interactions and a shortest path approach

Yu-Dong Cai, Tao Huang, Lei Chen, 2016, Scientific Reports.

Discovery of New Candidate Genes Related to Brain Development Using Protein Interaction Information

Yu-Dong Cai, Xiangyin Kong, Tao Huang, 2015, PloS one.

Identifying In Vitro Cultured Human Hepatocytes Markers with Machine Learning Methods Based on Single-Cell RNA-Seq Data

Fei Huang, Tao Huang, Lei Chen, 2022, Frontiers in Bioengineering and Biotechnology.

Network-Based Method for Identifying Co-Regeneration Genes in Bone, Dentin, Nerve and Vessel Tissues

Yu-Dong Cai, Xiangyin Kong, Tao Huang, 2017, Genes.

Alternative Polyadenylation Modification Patterns Reveal Essential Posttranscription Regulatory Mechanisms of Tumorigenesis in Multiple Tumor Types

Tao Zeng, Yu-Dong Cai, Tao Huang, 2020, BioMed research international.

Exploring Mouse Protein Function via Multiple Approaches

Yu-Dong Cai, Xiangyin Kong, Tao Huang, 2016, PloS one.

An Ensemble Prognostic Model for Colorectal Cancer

Yu-Dong Cai, Jian Zhang, Tao Huang, 2013, PloS one.

Recognition of Immune Cell Markers of COVID-19 Severity with Machine Learning Methods

Tao Huang, Lei Chen, Zi Mei, 2022, BioMed research international.

Identification of COVID-19 Infection-Related Human Genes Based on a Random Walk Model in a Virus–Human Protein Interaction Network

Tao Zeng, Yu-Dong Cai, Tao Huang, 2020, BioMed research international.

Identifying Key MicroRNA Signatures for Neurodegenerative Diseases With Machine Learning Methods

Tao Huang, Lei Chen, Kai-Yan Feng, 2022, Frontiers in Genetics.

Identifying Functions of Proteins in Mice With Functional Embedding Features

Tao Huang, Lei Chen, Hao Li, 2022, Frontiers in Genetics.

Identifying COVID-19 Severity-Related SARS-CoV-2 Mutation Using a Machine Learning Method

Fei Huang, Tao Huang, Lei Chen, 2022, Life.

Frontiers in Protein and Peptide Sciences

Wei Chen, Hui Ding, Kuo-Chen Chou, 2014 .

Identification of Human Cell Cycle Phase Markers Based on Single-Cell RNA-Seq Data by Using Machine Learning Methods

Fei Huang, Tao Huang, Lei Chen, 2022, BioMed research international.

Identification of cortical interneuron cell markers in mouse embryos based on machine learning analysis of single-cell transcriptomics

Tao Huang, Lei Chen, Yu-Hang Zhang, 2022, Frontiers in neuroscience.

Screening gene signatures for clinical response subtypes of lung transplantation

Tao Zeng, Tao Huang, Lei Chen, 2022, Molecular Genetics and Genomics.

Identification of COVID-19-Specific Immune Markers Using a Machine Learning Method

Fei Huang, Tao Huang, Hao Li, 2022, Frontiers in molecular biosciences.

Protein‐protein interaction networks as miners of biological discovery

Yu-Dong Cai, Tao Huang, Steven Wang, 2022, Proteomics.

Subcellular Localization Prediction of Human Proteins Using Multifeature Selection Methods

Tao Huang, Lei Chen, Yu-Hang Zhang, 2022, BioMed research international.

Identification of methylation signatures associated with CAR T cell in B-cell acute lymphoblastic leukemia and non-hodgkin’s lymphoma

Fei Huang, Tao Huang, Lei Chen, 2022, Frontiers in Oncology.

Characterization of spleen and lymph node cell types via CITE-seq and machine learning methods

Tao Huang, Hao Li, Deling Wang, 2022, Frontiers in Molecular Neuroscience.

Functional and embedding feature analysis for pan-cancer classification

Tao Huang, Jiarui Li, Yunpeng Cai, 2022, Frontiers in Oncology.

Identification of methylation signatures and rules for predicting the severity of SARS-CoV-2 infection with machine learning methods

Tao Huang, Kaiyan Feng, Yunpeng Cai, 2022, Frontiers in Microbiology.

Identification of Genes Associated with Breast Cancer Metastasis to Bone on a Protein-Protein Interaction Network with a Shortest Path Algorithm.

Yu-Dong Cai, Tao Huang, Lei Chen, 2017, Journal of proteome research.

Computational Analysis of Protein Tyrosine Nitration

ZhiSong He, Xiaohe Shi, Lele Hu, 2010 .

Identifying anal and cervical tumorigenesis-associated methylation signaling with machine learning methods

Fei Huang, Tao Huang, Yu-Hang Zhang, 2022, Frontiers in Oncology.

Identifying Protein Subcellular Locations With Embeddings-Based node2loc

Yu-Dong Cai, Tao Huang, Lei Chen, 2021, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Computational Systems Biology Methods in Molecular Biology, Chemistry Biology, Molecular Biomedicine, and Biopharmacy

Zengrong Liu, Tao Huang, Yudong Cai, 2014, BioMed research international.

Identification of protein–protein interaction associated functions based on gene ontology and KEGG pathway

Fei Huang, Tao Huang, Yu-Hang Zhang, 2022, Frontiers in Genetics.

Identification of COVID-19 severity biomarkers based on feature selection on single-cell RNA-Seq data of CD8+ T cells

Tao Huang, Kaiyan Feng, Yunpeng Cai, 2022, Frontiers in Genetics.

Identification of DNA Methylation Signature and Rules for SARS-CoV-2 Associated with Age.

Tao Huang, Lei Chen, Yudong Cai, 2022, Frontiers in bioscience.

Identifying MicroRNA Markers That Predict COVID-19 Severity Using Machine Learning Methods

Tao Huang, Yudong Cai, Kaiyan Feng, 2022, Life.

Prediction of protein amidation sites by feature selection and analysis

Lele Hu, Tao Huang, Yixue Li, 2013, Molecular Genetics and Genomics.

Prediction of lysine ubiquitination with mRMR feature selection and analysis

Yixue Li, Xiaohe Shi, Lele Hu, 2012, Amino Acids.

Identification of Transcriptome Biomarkers for Severe COVID-19 with Machine Learning Methods

Tao Huang, Lei Chen, Hao Li, 2022, Biomolecules.

Identification of Pan-Cancer Biomarkers Based on the Gene Expression Profiles of Cancer Cell Lines

Yu-Dong Cai, Tao Huang, Lei Chen, 2021, Frontiers in Cell and Developmental Biology.

Using GeneReg to construct time delay gene regulatory networks

Lei Liu, Tao Huang, Ziliang Qian, 2010, BMC Research Notes.

The Use of Chemical-Chemical Interaction and Chemical Structure to Identify New Candidate Chemicals Related to Lung Cancer

Lei Chen, Tao Huang, Yu-Dong Cai, 2015, PloS one.

An Information-Theoretic Machine Learning Approach to Expression QTL Analysis

Tao Huang, Yu-Dong Cai, Yu-Dong Cai, 2013, PloS one.

Immunosignature Screening for Multiple Cancer Subtypes Based on Expression Rule

Lei Chen, XiaoYong Pan, Tao Zeng, 2019, Front. Bioeng. Biotechnol..

Predicting Protein Phenotypes Based on Protein-Protein Interaction Network

Tao Huang, Yu-Dong Cai, Yu-Dong Cai, 2011, PloS one.

Computational Systems Biology

Tao Huang, 2018, Methods in Molecular Biology.

Analysis of cancer-related lncRNAs using gene ontology and KEGG pathways

Tao Huang, Lei Chen, Yu-Hang Zhang, 2017, Artif. Intell. Medicine.

Computational Analysis of HIV-1 Resistance Based on Gene Expression Profiles and the Virus-Host Interaction Network

Lei Chen, Tao Huang, Yu-Dong Cai, 2011, PloS one.

Identification of hepatocellular carcinoma related genes with k-th shortest paths in a protein-protein interaction network.

Lei Chen, Tao Huang, Yu-Dong Cai, 2013, Molecular bioSystems.

Analysis of Expression Pattern of snoRNAs in Different Cancer Types with Machine Learning Algorithms

Lei Chen, Tao Huang, Yu-Dong Cai, 2019, International journal of molecular sciences.

Identification of leukemia stem cell expression signatures through Monte Carlo feature selection strategy and support vector machine

Xiangyin Kong, Tao Huang, Lei Chen, 2019, Cancer Gene Therapy.

Identification of synthetic lethality based on a functional network by using machine learning algorithms

Lin Lu, Min Liu, Lei Chen, 2018, Journal of cellular biochemistry.

Gene expression differences among different MSI statuses in colorectal cancer

Xiaoyong Pan, Lei Chen, Tao Huang, 2018, International journal of cancer.

Identifying Patients with Atrioventricular Septal Defect in Down Syndrome Populations by Using Self-Normalizing Neural Networks and Feature Selection

Xiaohua Hu, Xiaoyong Pan, Yu Hang Zhang, 2018, Genes.

Identification of Drug-Drug Interactions Using Chemical Interactions

Lei Chen, Tao Huang, Chen Chu, 2017 .

Identify Key Sequence Features to Improve CRISPR sgRNA Efficacy

Jialiang Yang, Lei Chen, Tao Huang, 2017, IEEE Access.

Identification of the core regulators of the HLA I-peptide binding process

Tao Huang, Yu-Dong Cai, Xiangyin Kong, 2017, Scientific Reports.

Analysis and prediction of drug–drug interaction by minimum redundancy maximum relevance and incremental feature selection

Lai Wei, Lei Chen, Tao Huang, 2017, Journal of biomolecular structure & dynamics.

Prediction of Body Fluids where Proteins are Secreted into Based on Protein Interaction Network

Kuo-Chen Chou, Tao Huang, Yu-Dong Cai, 2011, PloS one.

Identification of retinoblastoma related genes with shortest path in a protein-protein interaction network.

Lei Zhang, Tao Huang, Yu-Dong Cai, 2012, Biochimie.

Cross talk of chromosome instability, CpG island methylator phenotype and mismatch repair in colorectal cancer

Tao Huang, Tao Huang, Tian-Ming Zhang, 2018, Oncology letters.

An integrated method for the identification of novel genes related to oral cancer

Lei Chen, Tao Huang, Yu-Dong Cai, 2017, PloS one.

The Occurrence of Genetic Alterations during the Progression of Breast Carcinoma

Tao Huang, Chenglin Liu, Tao Huang, 2016, BioMed research international.

Signal Propagation in Protein Interaction Network during Colorectal Cancer Progression

Kuo-Chen Chou, Lei Chen, Tao Huang, 2013, BioMed research international.

Identification of Cell Markers and Their Expression Patterns in Skin Based on Single-Cell RNA-Sequencing Profiles

Tao Huang, Lei Chen, Yudong Cai, 2022, Life.

Identification of Methylation Signatures and Rules for Sarcoma Subtypes by Machine Learning Methods

Tao Huang, Kaiyan Feng, Yunpeng Cai, 2022, BioMed research international.

Identification of Novel Lung Cancer Driver Genes Connecting Different Omics Levels With a Heat Diffusion Algorithm

Tao Huang, Lei Chen, Yu-Hang Zhang, 2022, Frontiers in Cell and Developmental Biology.

Identification of Lung-Cancer-Related Genes with the Shortest Path Approach in a Protein-Protein Interaction Network

Lei Chen, Tao Huang, Yu-Dong Cai, 2013, BioMed research international.

Classification of Widely and Rarely Expressed Genes with Recurrent Neural Network

Yu-Dong Cai, Tao Huang, Lei Chen, 2018, Computational and structural biotechnology journal.

Predicting Heart Cell Types by Using Transcriptome Profiles and a Machine Learning Method

Tao Huang, Lei Chen, Yudong Cai, 2022, Life.

Identifying Lung Cancer Cell Markers with Machine Learning Methods and Single-Cell RNA-Seq Data

Tao Huang, Lei Chen, Yu-Hang Zhang, 2021, Life.

Tao Huang, Yu-Dong Cai, Yu-Hang Zhang, 2017, BioMed research international.

Identifying the Signatures and Rules of Circulating Extracellular MicroRNA for Distinguishing Cancer Subtypes

Tao Zeng, Yu-Dong Cai, Tao Huang, 2021, Frontiers in Genetics.

Inferring Novel Tumor Suppressor Genes with a Protein-Protein Interaction Network and Network Diffusion Algorithms

Lei Chen, Tao Huang, Yu-Dong Cai, 2018, Molecular therapy. Methods & clinical development.

Analysis of the Sequence Characteristics of Antifreeze Protein

Tao Zeng, Yu-Dong Cai, Tao Huang, 2021, Life.

Recognizing Pattern and Rule of Mutation Signatures Corresponding to Cancer Types

Tao Zeng, Yu-Dong Cai, Tao Huang, 2021, Frontiers in Cell and Developmental Biology.

Identification of Candidate Genes Related to Renal Carcinoma using Protein Interactions and Structures

Jian Zhang, Tao Huang, Lei Chen, 2022 .

Identifying COVID-19-Specific Transcriptomic Biomarkers with Machine Learning Methods

Tao Zeng, Yu-Dong Cai, Tao Huang, 2021, BioMed research international.

Discriminating between deleterious and neutral non-frameshifting indels based on protein interaction networks and hybrid properties

Ning Zhang, Tao Huang, Yu-Dong Cai, 2014, Molecular Genetics and Genomics.

Identification of novel proliferative diabetic retinopathy related genes on protein-protein interaction network

Jian Zhang, Lei Chen, Tao Huang, 2016, Neurocomputing.

The Application of High-Throughput Technologies in Precision Diagnosis and Personalized Therapy (Pt III).

Tao Huang, 2019, Combinatorial chemistry & high throughput screening.

The Application of High-Throughput Technologies in Precision Diagnosis and Personalized Therapy.

Tao Huang, 2018, Combinatorial chemistry & high throughput screening.

Identification of Microbiota Biomarkers With Orthologous Gene Annotation for Type 2 Diabetes

Tao Zeng, Yu-Dong Cai, Tao Huang, 2021, Frontiers in Microbiology.

Genetic Modulation of RNA Splicing with a CRISPR-Guided Cytidine Deaminase.

Jia Li, Tao Huang, Xiaofang Sun, 2018, Molecular cell.

Predicting triplet of transcription factor - mediating enzyme - target gene by functional profiles

Lei Chen, Tao Huang, Yu-Dong Cai, 2011, Neurocomputing.

Analysis and Prediction of Translation Rate Based on Sequence and Functional Features of the mRNA

Tao Huang, Yu-Dong Cai, Kai-Yan Feng, 2011, PloS one.

Computationally identifying virulence factors based on KEGG pathways.

Lei Chen, Tao Huang, Lulu Zheng, 2013, Molecular bioSystems.

A Novel Method of Predicting Protein Disordered Regions Based on Sequence Features

Tao Huang, Yu-Dong Cai, Ning Zhang, 2013, BioMed research international.

Determining protein-protein functional associations by functional rules based on gene ontology and KEGG pathway.

Tao Zeng, Yu-Dong Cai, Tao Huang, 2021, Biochimica et biophysica acta. Proteins and proteomics.

Identification of new candidate drugs for lung cancer using chemical–chemical interactions, chemical–protein interactions and a K-means clustering algorithm

Lei Chen, Tao Huang, Yu-Dong Cai, 2016, Journal of biomolecular structure & dynamics.

Distinguishing Glioblastoma Subtypes by Methylation Signatures

Tao Zeng, Yu-Dong Cai, Tao Huang, 2020, Frontiers in Genetics.

Identifying the Immunological Gene Signatures of Immune Cell Subtypes

Tao Zeng, Yu-Dong Cai, Tao Huang, 2021, BioMed Research International.

Exploring the Genomic Patterns in Human and Mouse Cerebellums Via Single-Cell Sequencing and Machine Learning Method

Tao Huang, Lei Chen, Deling Wang, 2022, Frontiers in Genetics.

The prediction of interferon treatment effects based on time series microarray gene expression profiles

Yu Shyr, Tao Huang, Lu Xie, 2008, Journal of Translational Medicine.

Editorial: Machine Learning Advanced Dynamic Omics Data Analysis for Precision Medicine

Tao Zeng, Tao Huang, Chuan Lu, 2020, Frontiers in Genetics.

Analysis of Gene Expression Differences between Different Pancreatic Cells

Yu-Dong Cai, Tao Huang, Lei Chen, 2019, ACS Omega.

A computational method for the identification of new candidate carcinogenic and non-carcinogenic chemicals.

Chen Chu, Lei Chen, Tao Huang, 2015, Molecular bioSystems.

Identifying and analyzing different cancer subtypes using RNA-seq data of blood platelets

Lei Chen, Tao Huang, Xiangyin Kong, 2017, Oncotarget.

Predicting gene phenotype by multi-label multi-class model based on essential functional features

Tao Zeng, Yu-Dong Cai, Tao Huang, 2021, Molecular Genetics and Genomics.

Application of the Shortest Path Algorithm for the Discovery of Breast Cancer-Related Genes

Lei Chen, Tao Huang, Guohua Huang, 2016 .

Next-generation sequencing identifies novel genes with rare variants in total anomalous pulmonary venous connection

Tao Huang, K. Sun, Sun Chen, 2018, EBioMedicine.

Identification of Genes Associated with the Impairment of Olfactory and Gustatory Functions in COVID-19 via Machine-Learning Methods

Tao Huang, Kaiyan Feng, Yunpeng Cai, 2023, Life.

Air pollution and DNA methylation alterations in lung cancer: A systematic and comparative study

Tao Huang, Guang-Biao Zhou, Yi Cao, 2016, Oncotarget.

Detecting Blood Methylation Signatures in Response to Childhood Cancer Radiotherapy via Machine Learning Methods

Tao Huang, Yudong Cai, Kaiyan Feng, 2022, Biology.

Identification of Gene Signatures and Expression Patterns During Epithelial-to-Mesenchymal Transition From Single-Cell Expression Atlas

Xiangtian Yu, Yu-Dong Cai, Tao Huang, 2021, Frontiers in Genetics.

Identification of genes related to immune enhancement caused by heterologous ChAdOx1–BNT162b2 vaccines in lymphocytes at single-cell resolution with machine learning methods

Fei Huang, Tao Huang, Kaiyan Feng, 2023, Frontiers in Immunology.

Identification of Smoking-Associated Transcriptome Aberration in Blood with Machine Learning Methods

Fei Huang, Tao Huang, Jiarui Li, 2023, BioMed research international.

Functional association between influenza A (H1N1) virus and human.

Fang Liu, Tao Huang, Yudong Cai, 2009, Biochemical and biophysical research communications.

Predicting RNA 5-Methylcytosine Sites by Using Essential Sequence Features and Distributions

Tao Huang, Lei Chen, Zhandong Li, 2022, BioMed research international.

Mutational inactivation of mTORC1 repressor gene DEPDC5 in human gastrointestinal stromal tumors

J. Fletcher, Tao Huang, Linhui Wang, 2019, Proceedings of the National Academy of Sciences.

Screening Dys-Methylation Genes and Rules for Cancer Diagnosis by Using the Pan-Cancer Study

Tao Huang, Tao Zeng, Xiaoyong Pan, 2020, IEEE Access.

Gene Ontology and KEGG Pathway Enrichment Analysis of a Drug Target-Based Classification System

Chen Chu, Lei Chen, Tao Huang, 2015, PloS one.

Identification of dynamic gene expression profiles during sequential vaccination with ChAdOx1/BNT162b2 using machine learning methods

Tao Huang, Kaiyan Feng, Yunpeng Cai, 2023, Frontiers in Microbiology.

Identifying Infliximab- (IFX-) Responsive Blood Signatures for the Treatment of Rheumatoid Arthritis

Tao Zeng, Yu-Dong Cai, Tao Huang, 2021 .

Predicting Biological Functions of Compounds Based on Chemical-Chemical Interactions

Kuo-Chen Chou, Tao Huang, Yu-Dong Cai, 2011, PloS one.

Computational method for identifying malonylation sites by using random forest algorithm.

Tao Huang, Yu-Hang Zhang, ShaoPeng Wang, 2020, Combinatorial chemistry & high throughput screening.

Genomic variation, origin tracing, and vaccine development of SARS-CoV-2: A systematic review

Tao Huang, Geng Tian, Jialiang Yang, 2021, The Innovation.

Immune responses of different COVID-19 vaccination strategies by analyzing single-cell RNA sequencing data from multiple tissues using machine learning methods

Tao Huang, Hao Li, Kaiyan Feng, 2023, Frontiers in Genetics.

Identification of Chronic Hypersensitivity Pneumonitis Biomarkers with Machine Learning and Differential Co-expression Analysis.

Tao Huang, Steven Wang, Hongwei Zhang, 2020, Current gene therapy.

A hybrid method for prediction and repositioning of drug Anatomical Therapeutic Chemical classes.

Jing Lu, Lei Chen, Yu-Dong Cai, 2014, Molecular bioSystems.

Disease Cluster Detection and Functional Characterization

Tao Huang, Tao Zeng, Wei Guo, 2020, IEEE Access.

A sequence-based approach for predicting protein disordered regions.

Kuo-Chen Chou, Tao Huang, Yu-Dong Cai, 2013, Protein and peptide letters.

Predicting Human Protein Subcellular Locations by Using a Combination of Network and Function Features

Tao Zeng, Yu-Dong Cai, Tao Huang, 2021, Frontiers in Genetics.

Using Machine Learning Methods in Identifying Genes Associated with COVID-19 in Cardiomyocytes and Cardiac Vascular Endothelial Cells

Tao Huang, Lei Chen, Yudong Cai, 2023, Life.

Analysis and prediction of protein stability based on interaction network, gene ontology, and KEGG pathway enrichment scores.

Fei Huang, Tao Huang, Lei Chen, 2023, Biochimica et biophysica acta. Proteins and proteomics.

Identifying novel protein phenotype annotations by hybridizing protein–protein interactions and protein sequence similarities

Yu-Dong Cai, Tao Huang, Lei Chen, 2016, Molecular Genetics and Genomics.

Characterization of chromatin accessibility patterns in different mouse cell types using machine learning methods at single-cell resolution

Fei Huang, Tao Huang, Kaiyan Feng, 2023, Frontiers in Genetics.

Prediction and analysis of cell-penetrating peptides using pseudo-amino acid composition and random forest models

Xiangyin Kong, Tao Huang, Lei Chen, 2015, Amino Acids.

A Shortest-Path-Based Method for the Analysis and Prediction of Fruit-Related Genes in Arabidopsis thaliana

Lei Chen, Tao Huang, Yu-Dong Cai, 2016, PloS one.

The Reconstruction and Analysis of Gene Regulatory Networks.

Tao Huang, Guangyong Zheng, Tao Huang, 2018, Methods in molecular biology.

Discriminating cirRNAs from other lncRNAs using a hierarchical extreme learning machine (H-ELM) algorithm with feature selection

Yu-Dong Cai, Tao Huang, Lei Chen, 2018, Molecular Genetics and Genomics.

Identification of the copy number variant biomarkers for breast cancer subtypes

Yu-Dong Cai, Tao Huang, Lei Chen, 2018, Molecular Genetics and Genomics.

Identification of Key Genes With Differential Correlations in Lung Adenocarcinoma

Xiangyin Kong, Tao Huang, Ming Liu, 2021, Frontiers in Cell and Developmental Biology.

Analysis of the relationship between PM2.5 and lung cancer based on protein-protein interactions.

Yu-Dong Cai, Xiangyin Kong, Tao Huang, 2016, Combinatorial chemistry & high throughput screening.

Investigating gene methylation signatures for fetal intolerance prediction

Tao Zeng, Yu-Dong Cai, Tao Huang, 2021, PloS one.

Analysis of Gene Expression Profiles in the Human Brain Stem, Cerebellum and Cerebral Cortex

Chen Chu, Changming Zhu, Lei Chen, 2016, PloS one.

Analysis of Protein Pathway Networks Using Hybrid Properties

Kuo-Chen Chou, Lei Chen, Tao Huang, 2010, Molecules.

Investigation and Prediction of Human Interactome Based on Quantitative Features

Kaiyan Feng, Tao Huang, Lei Chen, 2020, Frontiers in Bioengineering and Biotechnology.

Predicting protein subcellular location using learned distributed representations from a protein-protein network

Lei Chen, Tao Huang, Min Liu, 2019, bioRxiv.

Prediction and Analysis of Retinoblastoma Related Genes through Gene Ontology and KEGG

Lei Chen, Tao Huang, Bi-Qing Li, 2013, BioMed research international.

Identifying Essential Signature Genes and Expression Rules Associated With Distinctive Development Stages of Early Embryonic Cells

Tao Huang, Tao Zeng, Xiaoyong Pan, 2019, IEEE Access.

Identiﬁcation of Genes Associated with the Impairment of Olfactory and Gustatory Functions in COVID-19 via Machine-Learning Methods

Tao Huang, Kaiyan Feng, Yunpeng Cai, 2022 .

Inferring novel genes related to oral cancer with a network embedding method and one-class learning algorithms

Yu-Dong Cai, Tao Huang, Lei Chen, 2019, Gene Therapy.

Using compound similarity and functional domain composition for prediction of drug-target interaction networks.

Lei Chen, Yu-Dong Cai, Zhi-Song He, 2010, Medicinal chemistry (Shariqah (United Arab Emirates)).

Predicting protein oxidation sites with feature selection and analysis approach

K. Chou, Lele Hu, Tao Huang, 2012, Journal of Biomolecular Structure and Dynamics.

Hepatitis C Virus Network Based Classification of Hepatocellular Cirrhosis and Carcinoma

K. Chou, Yu-Dong Cai, Tao Huang, 2012, PloS one.

Prediction of protein N-formylation and comparison with N-acetylation based on a feature selection method

Xiangyin Kong, Ning Zhang, Tao Huang, 2016, Neurocomputing.

Computational method for distinguishing lysine acetylation, sumoylation, and ubiquitination using the random forest algorithm with a feature selection procedure.

Tao Huang, Yu-Dong Cai, Jiarui Li, 2017, Combinatorial chemistry & high throughput screening.

Analysis of cancer-related lncRNAs using gene ontology and KEGG pathways

Yu-Dong Cai, Tao Huang, Lei Chen, 2017, Artif. Intell. Medicine.