D. Santoni

F. Ceccherini‐Silberstein, D. Santoni, C. Perno, 2022, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Viral peptides-MHC interaction: Binding probability and distance from human peptides.

D. Santoni, 2018, Journal of immunological methods.

Network homophily via tail inequalities

P. G. Franciosa, D. Santoni, N. Apollonio, 2022, 2208.01914.

Bioinformatics and microbial biodiversity: analysis of vibrios by the GenEnv system.

D. Santoni, V. Romano Spica, A. Paparini, 2006, Journal of preventive medicine and hygiene.

A genome-wide study on differential methylation in different cancers using TCGA database

D. Santoni, D. Vergni, Danilo Pignotti, 2021 .

Investigating transcription factor synergism in humans

D. Santoni, Fabio Cumbo, D. Vergni, 2017, DNA research : an international journal for rapid publication of reports on genes and genomes.

Evaluating homophily in networks via HONTO (HOmophily Network TOol): a case study of chromosomal interactions in human PPI networks

P. G. Franciosa, D. Blankenberg, D. Santoni, 2022, Bioinformatics.

Multi-scale Simulation of T Helper Lymphocyte Differentiation

Daniele Santoni, Vinca Prana, Paolo Tieri, 2014, BSB.

On the integration of protein-protein interaction networks with gene expression and 3D structural data: What can be gained?

Daniele Santoni, Mary Ellen Bock, Paola Bertolazzi, 2014 .

A novel method for assessing and measuring homophily in networks through second-order statistics

P. G. Franciosa, D. Santoni, N. Apollonio, 2021, Scientific Reports.

Identifying Correlations between Chromosomal Proximity of Genes and Distance of Their Products in Protein-Protein Interaction Networks of Yeast

Daniele Santoni, Filippo Castiglione, Paola Paci, 2013, PloS one.

A study of the impact of DNA helical rise on protein-DNA interaction.

D. Santoni, F. Mazzei, F. Pedone, 2019, Genomics.

microRNAs as prime players in a combinatorial view of evolution

D. Cacchiarelli, I. Bozzoni, D. Santoni, 2008, RNA biology.

TRANSPARENT: a Python tool for designing transcription factor regulatory networks

D. Santoni, Carlo Derelitto, 2023, Soft Computing.

Modules Identification in Protein Structures: The Topological and Geometrical Solutions

Daniele Santoni, Alessandro Giuliani, Pasquale Palumbo, 2014, J. Chem. Inf. Model..

Next generation sequencing reads comparison with an alignment-free distance

P. Bertolazzi, D. Santoni, G. Felici, 2014, BMC Research Notes.

Next generation sequencing reads comparison with an alignment-free distance

Daniele Santoni, Giovanni Felici, Emanuel Weitschek, 2014, BMC Research Notes.

A description of the manual curation of the nodes and interactions underlying the network model

E. Hovig, F. Barrenäs, M. Benson, 2010 .

GIANT: A Cytoscape Plugin for Modular Networks

Daniele Santoni, Alessandro Giuliani, Fabio Cumbo, 2014, PloS one.

Combining Network Modeling and Gene Expression Microarray Analysis to Explore the Dynamics of Th1 and Th2 Cell Regulation

Daniele Santoni, Eivind Hovig, Filippo Castiglione, 2010, PLoS Comput. Biol..

A gzip‐based algorithm to identify bacterial families by 16S rRNA

D. Santoni, V. Romano-Spica, D Santoni, 2006, Letters in applied microbiology.

Implementation of a regulatory gene network to simulate the TH1/2 differentiation in an agent-based model of hypersensitivity reactions

Daniele Santoni, Filippo Castiglione, Marco Pedicini, 2008, Bioinform..

Proteins as Sponges: A Statistical Journey along Protein Structure Organization Principles

Daniele Santoni, Alessandro Giuliani, Paola Paci, 2012, J. Chem. Inf. Model..

A genomic glimpse of aminoacyl-tRNA synthetases in malaria parasite Plasmodium falciparum

D. Santoni, E. Pizzi, F. Silvestrini, 2009, BMC Genomics.

The impact of flanking sequence features on DNA CpG methylation

Daniele Santoni, D. Santoni, 2021, Comput. Biol. Chem..

Numerical modelling of the ground motion: a parallel approach

Valeria Ruggiero, Piero Lanucara, Agata Caserta, 2005 .

A Content-Based Retrieval Framework for Whole Metagenome Sequencing Samples

Daniele Santoni, Giovanni Felici, Hasan Ogul, 2018, J. Integr. Bioinform..

Peptide Hamming Graphs: A network representation of peptides presented through specific HLAs to identify potential epitope clusters.

D. Santoni, 2023, Journal of immunological methods.

Automatic Detection of Words Associations in Texts Based on Joint Distribution of Words Occurrences

D. Santoni, E. Pourabbas, 2016, Comput. Intell..

ACTN3 genotyping by real-time PCR in the Italian population and athletes.

D. Santoni, F. Pigozzi, A. Paparini, 2007, Medicine and science in sports and exercise.

Sequence-dependent DNA helical rise and nucleosome stability

Daniele Santoni, D. Santoni, Francesco Pedone, 2009, BMC Molecular Biology.

A novel method for assessing and measuring homophily in networks Descriptive power of z-score arrays and comparisons of networks

P. G. Franciosa, D. Santoni, N. Apollonio, 2022 .

On function homophily of microbial Protein-Protein Interaction Networks pdf

Daniele Santoni, Paolo Giulio Franciosa, Nicola Apollonio, 2021, ArXiv.

An integrated approach (CLuster Analysis Integration Method) to combine expression data and protein-protein interaction networks in agrigenomics: application on Arabidopsis thaliana.

Daniele Santoni, Giovanni Felici, Marek Blazewicz, 2014, Omics : a journal of integrative biology.

Network homophily via tail inequalities.

P. G. Franciosa, D. Santoni, N. Apollonio, 2022, Physical review. E.

A novel method for assessing and measuring homophily in networks through second-order statistics

P. G. Franciosa, D. Santoni, N. Apollonio, 2021, Scientific Reports.

An entropy-based study on mutational trajectory of SARS-CoV-2 in India

D. Santoni, Nimisha Ghosh, I. Saha, 2021, Infection, Genetics and Evolution.