A. Arakaki

发表

Prediction of physical protein–protein interactions

J. Skolnick, A. Szilágyi, Vera Grimm, 2005, Physical biology.

On the origin and highly likely completeness of single-domain protein structures.

J. Skolnick, E. Shakhnovich, Yang Zhang, 2006, Proceedings of the National Academy of Sciences of the United States of America.

EFICAz: a comprehensive approach for accurate genome-scale enzyme function inference.

J. Skolnick, Weidong Tian, A. Arakaki, 2004, Nucleic acids research.

High precision multi-genome scale reannotation of enzyme function by EFICAz

Weidong Tian, Jeffrey Skolnick, J. Skolnick, 2006, BMC Genomics.

The continuity of protein structure space is an intrinsic property of proteins

Michal Brylinski, Jeffrey Skolnick, J. Skolnick, 2009, Proceedings of the National Academy of Sciences.

Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome.

Hui Lu, Jeffrey Skolnick, J. Skolnick, 2003, Genome research.

Marker metabolites can be therapeutic targets as well

J. Skolnick, A. Arakaki, J. McDonald, 2008, Nature.

Involvement of the Flavin si-Face Tyrosine on the Structure and Function of Ferredoxin-NADP+ Reductases*

A. Arakaki, E. Ceccarelli, N. Calcaterra, 2001, The Journal of Biological Chemistry.

Identification of metabolites with anticancer properties by computational metabolomics

Ying Huang, Jeffrey Skolnick, Roman Mezencev, 2008, Molecular Cancer.

Chloroplast Hsp70s are not involved in the import of ferredoxin-NADP + reductase precursor

A. Arakaki, E. Ceccarelli, D. Rial, 2006 .

Origins of Organelles in Plants and Algae as Inferred from Comparisons of Highly Conserved Chaperone Proteins

A. Arakaki, A. Viale, 1995 .

TOUCHSTONE: A unified approach to protein structure prediction

Daisuke Kihara, Yang Zhang, Andrzej Kolinski, 2003, Proteins.

Expression, assembly and secretion of a fully active plant ferredoxin-NADP+ reductase by Saccharomyces cerevisiae.

A. Arakaki, E. Ceccarelli, N. Calcaterra, 1994, European journal of biochemistry.

Modulation of the enzymatic efficiency of ferredoxin‐NADP(H) reductase by the amino acid volume around the catalytic site

A. Arakaki, E. Ceccarelli, D. Rial, 2008, The FEBS journal.

Competition between C-terminal Tyrosine and Nicotinamide Modulates Pyridine Nucleotide Affinity and Specificity in Plant Ferredoxin-NADP+ Reductase*

P. Karplus, A. Arakaki, E. Ceccarelli, 2000, The Journal of Biological Chemistry.

A productive NADP+ binding mode of ferredoxin–NADP + reductase revealed by protein engineering and crystallographic studies

P. Karplus, A. Arakaki, E. Ceccarelli, 1999, Nature Structural Biology.

Plant‐type ferredoxin‐NADP+ reductases: a basal structural framework and a multiplicity of functions

A. Arakaki, E. Ceccarelli, N. Carrillo, 1997, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

PSiFR: an integrated resource for prediction of protein structure and function

Hongyi Zhou, Michal Brylinski, Jeffrey Skolnick, 2010, Bioinform..

EFICAz2: enzyme function inference by a combined approach enhanced by machine learning

Ying Huang, Jeffrey Skolnick, Adrian K. Arakaki, 2009, BMC Bioinformatics.

The chaperone connection to the origins of the eukaryotic organelles

A. Arakaki, A. Viale, 1994, FEBS letters.

The Mosaic Genome of Anaeromyxobacter dehalogenans Strain 2CP-C Suggests an Aerobic Common Ancestor to the Delta-Proteobacteria

J. Skolnick, L. Shimkets, A. Arakaki, 2008, PloS one.

Horizontal Gene Transfer and Assortative Recombination within the Acinetobacter baumannii Clinical Population Provide Genetic Diversity at the Single carO Gene, Encoding a Major Outer Membrane Protein Channel

A. Arakaki, A. Viale, L. Actis, 2011, Journal of bacteriology.

Functional plasticity and catalytic efficiency in plant and bacterial ferredoxin-NADP(H) reductases.

A. Arakaki, E. Ceccarelli, N. Carrillo, 2004, Biochimica et biophysica acta.

Evolutionary relationships among eubacterial groups as inferred from GroEL (chaperonin) sequence comparisons.

A. Arakaki, F. C. Soncini, A. Viale, 1994, International journal of systematic bacteriology.

Interaction of the targeting sequence of chloroplast precursors with Hsp70 molecular chaperones.

A. Arakaki, E. Ceccarelli, D. Rial, 2000, European journal of biochemistry.

TASSER: An automated method for the prediction of protein tertiary structures in CASP6

Yang Zhang, Jeffrey Skolnick, Adrian K Arakaki, 2005, Proteins.

Aerobic uranium (VI) bioprecipitation by metal-resistant bacteria isolated from radionuclide- and metal-contaminated subsurface soils.

R. J. Martinez, J. Skolnick, A. Arakaki, 2007, Environmental microbiology.

Large-scale assessment of the utility of low-resolution protein structures for biochemical function assignment

Yang Zhang, Jeffrey Skolnick, Adrian K. Arakaki, 2004, Bioinform..

Bioinformatics Applications Note Structural Bioinformatics Psifr: an Integrated Resource for Prediction of Protein Structure and Function

J. Skolnick, Hongyi Zhou, S. Pandit, 2022 .

Identification of metabolites with anticancer properties by computational metabolomics

J. Skolnick, A. Arakaki, Ying Huang, 2008, Molecular Cancer.

Digital Commons@Becker

A. Arakaki, Long, Hui Lu, 2022 .