S. Bilke

发表

Database of mRNA gene expression profiles of multiple human organs.

J. Khan, Jun S. Wei, S. Davis, 2005, Genome research.

The exomes of the NCI-60 panel: a genomic resource for cancer biology and systems pharmacology.

P. Meltzer, W. Reinhold, Y. Pommier, 2013, Cancer research.

Transcriptional networks inferred from molecular signatures of breast cancer.

Sven Bilke, Vessela N Kristensen, Wenwu Cui, 2008, The American journal of pathology.

Genome-wide depletion of replication initiation events in highly transcribed regions.

William C Reinhold, Sven Bilke, Mirit I Aladjem, 2011, Genome research.

The gene expression response of breast cancer to growth regulators: patterns and correlation with tumor expression profiles.

Sven Bilke, Markus Ringnér, Paul S Meltzer, 2003, Cancer research.

Prediction of Clinical Outcome Using Gene Expression Profiling and Artificial Neural Networks for Patients with Neuroblastoma

Qing-Rong Chen, Frank Berthold, Javed Khan, 2004, Cancer Research.

High-resolution cDNA microarray-based comparative genomic hybridization analysis in neuroblastoma.

J. Khan, S. Bilke, Qingrong Chen, 2005, Cancer Letters.

Increased WSB1 copy number correlates with its over‐expression which associates with increased survival in neuroblastoma

S. Steinberg, J. Khan, Jun S. Wei, 2006, Genes, chromosomes & cancer.

Oncogenic ETS fusions deregulate E2F3 target genes in Ewing sarcoma and prostate cancer

P. Meltzer, S. Davis, S. Bilke, 2013, Genome research.

Neuroblastoma Profiling and Artificial Neural Networks for Patients with Prediction of Clinical Outcome Using Gene Expression

S. Steinberg, J. Khan, Jun S. Wei, 2004 .

Proteomic expression profiling of thyroid neoplasms

S. Bilke, S. Hewitt, D. Krizman, 2007, Proteomics. Clinical applications.

Large-scale profiling of archival lymph nodes reveals pervasive remodeling of the follicular lymphoma methylome.

P. Meltzer, E. Jaffe, J. Hipp, 2009, Cancer research.

Archival fine-needle aspiration cytopathology (FNAC) samples: untapped resource for clinical molecular profiling.

P. Meltzer, G. Giaccone, S. Davis, 2010, The Journal of molecular diagnostics : JMD.

Whole Chromosome Alterations Predict Survival in High-Risk Neuroblastoma without MYCN Amplification

J. Khan, Jun S. Wei, S. Bilke, 2008, Clinical Cancer Research.

Functional profiling of uncommon VCAM1 promoter polymorphisms prevalent in African American populations

S. Chanock, K. Gardner, C. Haggerty, 2007, Human mutation.

Analysis of comparative genomic hybridization data on cDNA microarrays.

S. Bilke, Javed I. Khan, 2007, Methods in molecular biology.

EWS-FLI1 employs an E2F switch to drive target gene expression

Mark Girolami, Theodore Papamarkou, Sven Bilke, 2015, Nucleic acids research.

The interplay between cancer type, panel size and tumor mutational burden threshold in patient selection for cancer immunotherapy

Chen Zhao, S. Bilke, Shile Zhang, 2020, PLoS Comput. Biol..

Genome-wide identification of PAX3-FKHR binding sites in rhabdomyosarcoma reveals candidate target genes important for development and cancer.

P. Meltzer, Fan Yang, S. Bilke, 2011, Cancer research.

Genome-Wide Identification of PAX 3-FKHR Binding Sites in Rhabdomyosarcoma Reveals Candidate Target Genes Important for Development and Cancer

P. Meltzer, S. Bilke, R. Walker, 2010 .

Cancer esearch cular and Cellular Pathobiology ome-Wide Identification of PAX 3-FKHR Binding Sites in bdomyosarcoma Reveals Candidate Target Genes R ortant for Development and Cancer

P. Meltzer, S. Bilke, R. Walker, 2010 .

Evidence for a Functional Link between Chromosomal Breakpoints and Aberrant DNA Methylation in Cancer

S. Bilke, Y. Gindin, 2014, Front. Oncol..

Genome-wide profiles of CtBP link metabolism with genome stability and epithelial reprogramming in breast cancer

C. Perou, C. Miller, O. Olopade, 2013, Nature Communications.

Inferring a tumor progression model for neuroblastoma from genomic data.

Qing-Rong Chen, Javed Khan, Sven Bilke, 2005, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

A specific missense mutation in GTF2I occurs at high frequency in thymic epithelial tumors

Jaime Rodriguez-Canales, James Gao, Sven Bilke, 2014, Nature Genetics.

NUP98-PHF23 is a chromatin-modifying oncoprotein that causes a wide array of leukemias sensitive to inhibition of PHD histone reader function.

P. Meltzer, S. Bilke, Y. Ning, 2014, Cancer discovery.

Reader Function a Wide Array of Leukemias Sensitive to Inhibition of PHD Histone PHF23 Is a Chromatin-Modifying Oncoprotein That Causes

P. Meltzer, S. Bilke, Y. Ning, 2014 .

Enforced expression of Lin28b leads to impaired T-cell development, release of inflammatory cytokines, and peripheral T-cell lymphoma.

P. Meltzer, S. Bilke, R. Walker, 2012, Blood.

Interaction between the microbiome and TP53 in human lung cancer

Eric C. Polley, Paul S. Meltzer, James R. White, 2018, Genome Biology.

8-24-2018 Interaction between the microbiome and TP 53 in human lung cancer

Archana S Bhat, Sergey V. Balashov, Julia Oh, 2018 .

A mutant p53/let-7i-axis-regulated gene network drives cell migration, invasion and metastasis

P. Meltzer, S. Ambs, S. Bilke, 2014, Oncogene.

A methyl-deviator epigenotype of estrogen receptor-positive breast carcinoma is associated with malignant biology.

P. Meltzer, Jian-Bing Fan, S. Davis, 2011, The American journal of pathology.

Early B-Cell Factor, E2A, and Pax-5 Cooperate To Activate the Early B Cell-Specific mb-1 Promoter

S. Bilke, M. Sigvardsson, Gongyi Zhang, 2002, Molecular and Cellular Biology.

cDNA array-CGH profiling identifies genomic alterations specific to stage and MYCN-amplification in neuroblastoma

Qing-Rong Chen, Frank Berthold, Javed Khan, 2004, BMC Genomics.

A p21-ZEB1 Complex Inhibits Epithelial-Mesenchymal Transition through the MicroRNA 183-96-182 Cluster

P. Meltzer, S. Bilke, L. Wakefield, 2013, Molecular and Cellular Biology.

Credentialing preclinical pediatric xenograft models using gene expression and tissue microarray analysis.

Peter Houghton, Javed Khan, Sven Bilke, 2007, Cancer research.

Erratum: Prediction of clinical outcome using gene expression profiling and artificial neural networks for patients with neuroblastoma (Cancer Research (October 1, 2004) 64 (6883-6891))

Frank Berthold, Javed Khan, Sven Bilke, 2005 .

The CDX1–microRNA-215 axis regulates colorectal cancer stem cell differentiation

W. Bodmer, S. Bilke, Y. Zhu, 2015, Proceedings of the National Academy of Sciences.

Altered expression of cell cycle genes distinguishes aggressive neuroblastoma

J. Khan, Jun S. Wei, F. Westermann, 2005, Oncogene.

TruSight Oncology 500: Enabling Comprehensive Genomic Profiling and Biomarker Reporting with Targeted Sequencing

S. Bilke, J. Dockter, Shile Zhang, 2020, bioRxiv.

Dynamic bookmarking of primary response genes by p300 and RNA polymerase II complexes

D. Longo, A. De Siervi, Jung S. Byun, 2009, Proceedings of the National Academy of Sciences.

Identification of RECQ1-regulated transcriptome uncovers a role of RECQ1 in regulation of cancer cell migration and invasion

P. Meltzer, S. Bilke, Y. Zhu, 2014, Cell cycle.

A chromatin structure‐based model accurately predicts DNA replication timing in human cells

Sven Bilke, Yevgeniy Gindin, Mirit I Aladjem, 2014, Molecular systems biology.

Identification and Mapping of Origins of DNA Replication in the Human Genome

Yidong Chen, S. Bilke, R. Walker, 2013 .

An integrated cross-platform prognosis study on neuroblastoma patients.

Qing-Rong Chen, Javed Khan, Sven Bilke, 2008, Genomics.

SLFN11 Is a Transcriptional Target of EWS-FLI1 and a Determinant of Drug Response in Ewing Sarcoma

P. Meltzer, J. Khan, Y. Pommier, 2015, Clinical Cancer Research.

A Genome-Wide Screen Reveals a Role for the HIR Histone Chaperone Complex in Preventing Mislocalization of Budding Yeast CENP-A

D. Landsman, P. Meltzer, C. Myers, 2018, Genetics.

Genome-wide methylation profiling in archival formalin-fixed paraffin-embedded tissue samples.

P. Meltzer, Yidong Chen, S. Davis, 2012, Methods in molecular biology.

Preferential Localization of Human Origins of DNA Replication at the 5′-Ends of Expressed Genes and at Evolutionarily Conserved DNA Sequences

Mirit I. Aladjem, Sean Davis, Paul S. Meltzer, 2011, PloS one.

Chromatin structure fully determines replication timing program in human cells

Sven Bilke, Yevgeniy Gindin, Paul S. Meltzer, 2013, BCB.

Somatic mutations in murine models of leukemia and lymphoma: Disease specificity and clinical relevance

P. Meltzer, S. Bilke, Y. Zhu, 2017, Genes, chromosomes & cancer.

Progenitor B-1 B-cell acute lymphoblastic leukemia is associated with collaborative mutations in 3 critical pathways.

P. Meltzer, S. Bilke, Y. Zhu, 2017, Blood advances.

Interaction between the microbiome and TP53 in human lung cancer

Archana S Bhat, Sergey V. Balashov, Julia Oh, 2018, Genome Biology.

Microbiome-TP53 Gene Interaction in Human Lung Cancer

Archana S Bhat, Sergey V. Balashov, Julia Oh, 2018, bioRxiv.

RNA analysis of B cell lines arrested at defined stages of differentiation allows for an approximation of gene expression patterns during B cell development

C. Peterson, S. Bilke, R. Månsson, 2003, Journal of leukocyte biology.

CD44-stimulated human B cells express transcripts specifically involved in immunomodulation and inflammation as analyzed by DNA microarrays.

S. Bilke, S. Ingvarsson, C. Borrebaeck, 2003, Blood.

SLFN 11 is a transcriptional target of EWS-FLI 1 and a determinant of drug response in Ewing ’ s sarcoma

J. Khan, Y. Pommier, S. Bilke, 2015 .

Replicon: a software to accurately predict DNA replication timing in metazoan cells

P. Meltzer, S. Bilke, Y. Gindin, 2014, Front. Genet..

104th American Association For Cancer Research (AACR) annual meeting; breakthroughs in science and technology changing cancer care.

S. Bilke, O. Abaan, 2013, ACS chemical biology.

An Introduction to the methylumi package

S. Davis, S. Bilke, 2016 .

Probabilistic estimation of microarray data reliability and underlying gene expression

Thomas Breslin, Sven Bilke, Mikael Sigvardsson, 2003, BMC Bioinformatics.

Abstract 435: Accurate measurement of tumor mutation burden through tumor-only sequencing using a 500-gene panel

S. Bilke, R. Vijayaraghavan, Shile Zhang, 2018, Molecular and Cellular Biology / Genetics.

Detection of low level genomic alterations by comparative genomic hybridization based on cDNA micro-arrays

Qing-Rong Chen, Javed I. Khan, Sven Bilke, 2005, Bioinform..

Analyzing the association of SCNA boundaries with replication timing

S. Bilke, Y. Gindin, 2012, Nature Biotechnology.