I. Hoof

发表

NetMHCpan, a method for MHC class I binding prediction beyond humans

O. Lund, M. Nielsen, Bjoern Peters, 2008, Immunogenetics.

An atlas of active enhancers across human cell types and tissues

T. Meehan, C. Mungall, A. Sandelin, 2014, Nature.

The Immune Epitope Database 2.0

Alessandro Sette, Randi Vita, Jason Greenbaum, 2009, Nucleic Acids Res..

State of the art and challenges in sequence based T-cell epitope prediction

Morten Nielsen, Ole Lund, Claus Lundegaard, 2010, Immunome research.

CLUSEAN: a computer-based framework for the automated analysis of bacterial secondary metabolite biosynthetic gene clusters.

I. Hoof, D. Huson, T. Weber, 2009, Journal of biotechnology.

The MHC Motif Viewer: A Visualization Tool for MHC Binding Motifs

O. Lund, M. Nielsen, I. Hoof, 2010, Current protocols in immunology.

CD8+ TCR Repertoire Formation Is Guided Primarily by the Peptide Component of the Antigenic Complex

Katherine K. Matthews, C. Kesmir, I. Hoof, 2012, The Journal of Immunology.

Polyadenylation site–induced decay of upstream transcripts enforces promoter directionality

L. Steinmetz, A. Sandelin, I. Hoof, 2013, Nature Structural &Molecular Biology.

HLA class I allele promiscuity revisited

I. Hoof, D. van Baarle, C. Keşmir, 2011, Immunogenetics.

A Comparative Analysis of Viral Peptides Presented by Contemporary Human and Chimpanzee MHC Class I Molecules

I. Hoof, R. Bontrop, H. W. V. van Deutekom, 2011, The Journal of Immunology.

MHC Class I Molecules Presented by Contemporary Human and A Comparative Analysis of Viral Peptides

I. Hoof, H. V. Deutekom, C. Keşmir, 2011 .

Comprehensive Analysis of the Naturally Processed Peptide Repertoire: Differences between HLA-A and B in the Immunopeptidome

Ilka Hoof, Can Kesmir, I. Hoof, 2015, PloS one.

Measles Virus Epitope Presentation by HLA: Novel Insights into Epitope Selection, Dominance, and Microvariation

I. Hoof, H. Vennema, A. I. Costa, 2015, Front. Immunol..

Interdisciplinary Analysis of HIV-Specific CD8+ T Cell Responses against Variant Epitopes Reveals Restricted TCR Promiscuity

O. Lund, M. Nielsen, I. Hoof, 2010, The Journal of Immunology.

Identification of TNF-α-Responsive Promoters and Enhancers in the Intestinal Epithelial Cell Model Caco-2

A. Sandelin, I. Hoof, R. Andersson, 2014, DNA research : an international journal for rapid publication of reports on genes and genomes.

Functional analysis of frequently expressed Chinese rhesus macaque MHC class I molecules Mamu-A1*02601 and Mamu-B*08301 reveals HLA-A2 and HLA-A3 supertypic specificities

Bjoern Peters, J. Sidney, A. Sette, 2011, Immunogenetics.

Research article Evolution of HLA-DRB Genes

I. Hoof, R. Bontrop, G. Doxiadis, 2012 .

A shared MHC supertype motif emerges by convergent evolution in macaques and mice, but is totally absent in human MHC molecules

J. Sidney, A. Sette, B. Mothé, 2012, Immunogenetics.

Diverse and highly cross‐reactive T‐cell responses in ragweed allergic patients independent of geographical region

C. Lundegaard, I. Hoof, L. Lund, 2020, Allergy.

Strong and frequent T‐cell responses to the minor allergen Phl p 12 in Spanish patients IgE‐sensitized to Profilins

I. Hoof, D. Barber, C. Blanco, 2018, Allergy.

Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolution

Tilmann Weber, Ilka Hoof, Daniel H Huson, 2007, BMC Evolutionary Biology.

A promoter-level mammalian expression atlas

Cesare Furlanello, Finn Drabløs, Carsten O. Daub, 2015 .

Analysis of the DNA methylome and transcriptome in granulopoiesis reveals timed changes and dynamic enhancer methylation.

A. Sandelin, Piero Carninci, Y. Hayashizaki, 2014, Blood.

reveal timed changes and dynamic enhancer methylation Analysis of the DNA methylome and transcriptome in granulopoiesis

A. Sandelin, Piero Carninci, Y. Hayashizaki, 2014 .

Allergen-specific IgG+ memory B cells are temporally linked to IgE memory responses.

C. Lundegaard, S. Durham, Bjoern Peters, 2019, The Journal of allergy and clinical immunology.

Evolution of HLA-DRB genes.

I. Hoof, R. Bontrop, G. Doxiadis, 2012, Molecular biology and evolution.

Humans with chimpanzee-like major histocompatibility complex-specificities control HIV-1 infection

O. Lund, M. Nielsen, I. Hoof, 2008, AIDS.

The most common Chinese rhesus macaque MHC class I molecule shares peptide binding repertoire with the HLA-B7 supertype

Bjoern Peters, J. Sidney, A. Sette, 2010, Immunogenetics.

Estimating the Fitness Cost of Escape from HLA Presentation in HIV-1 Protease and Reverse Transcriptase

Sebastian Bonhoeffer, Christos J. Petropoulos, Mojgan Haddad, 2012, PLoS Comput. Biol..

Promiscuity Epitopes Reveals Restricted TCR T Cell Responses against Variant + CD 8 Interdisciplinary Analysis of HIV-Specific

O. Lund, M. Nielsen, I. Hoof, 2010 .

HLA Preferences for Conserved Epitopes: A Potential Mechanism for Hepatitis C Clearance

Johannes Textor, Can Keşmir, Ilka Hoof, 2015, Front. Immunol..

Purification and molecular characterization of phospholipase, antigen 5 and hyaluronidases from the venom of the Asian hornet (Vespa velutina)

I. Hoof, M. Lombardero, R. Monsalve, 2019, bioRxiv.

Peptide-binding motifs associated with MHC molecules common in Chinese rhesus macaques are analogous to those of human HLA supertypes and include HLA-B27-like alleles

J. Sidney, A. Sette, B. Mothé, 2013, Immunogenetics.

Identification of CD8+ T Cell Epitopes in the West Nile Virus Polyprotein by Reverse-Immunology Using NetCTL

Morten Nielsen, Ole Lund, Søren Buus, 2010, PloS one.

MHC motif viewer

Morten Nielsen, Ole Lund, Nicolas Rapin, 2008, Immunogenetics.

Immunoproteomic analysis of house dust mite antigens reveals distinct classes of dominant T cell antigens according to function and serological reactivity

J. Greenbaum, Bjoern Peters, A. Sette, 2017, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.

A shared MHC supertype motif emerges by convergent evolution in macaques and mice, but is totally absent in human MHC molecules

J. Sidney, A. Sette, B. Mothé, 2012, Immunogenetics.

Proteome Sampling by the HLA Class I Antigen Processing Pathway

Ilka Hoof, Can Kesmir, William H. Hildebrand, 2012, PLoS Comput. Biol..

Assessment of Spatial and Temporal Variation in the Skin Transcriptome of Atopic Dermatitis by Use of 1.5 mm Mini Punch Biopsies.

T. Litman, I. Hoof, L. Skov, 2022, The Journal of investigative dermatology.

A Distinct Phenotype of Polarized Memory B cell holds IgE Memory

M. Jordana, I. Hoof, David R. Glass, 2023, bioRxiv.

Antigenic Complex Primarily by the Peptide Component of the TCR Repertoire Formation Is Guided + CD8

Katherine K. Matthews, I. Hoof, John J Miles, 2013 .

An Integrated Genomic and Transcriptomic Analysis Reveals Distinct Molecular Features Associated with Mild-to-moderate Atopic Dermatitis

T. Litman, I. Hoof, T. Hu, 2023, medRxiv.

SigniSite: Identification of residue-level genotype-phenotype correlations in protein multiple sequence alignments

Morten Nielsen, Ole Lund, Ilka Hoof, 2013, Nucleic Acids Res..