G. Marçais

发表

Algorithms Gage: a Critical Evaluation of Genome Assemblies and Assembly Material Supplemental

M. Schatz, S. Salzberg, S. Koren, 2008 .

Mis-Assembled “Segmental Duplications” in Two Versions of the Bos taurus Genome

David R. Kelley, S. Salzberg, J. Yorke, 2012, PloS one.

A whole-genome assembly of the domestic cow, Bos taurus

David R. Kelley, M. Schatz, S. Salzberg, 2009, Genome Biology.

Sequencing and Assembly of the 22-Gb Loblolly Pine Genome

S. Salzberg, J. Yorke, P. D. de Jong, 2014, Genetics.

Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis

Albert J. Vilella, Steven G. Schroeder, Edward J. Smith, 2010, PLoS biology.

Sequence of the Sugar Pine Megagenome

S. Salzberg, J. Yorke, P. D. de Jong, 2016, Genetics.

A new rhesus macaque assembly and annotation for next-generation sequencing analyses

Guillaume Marçais, Steven L Salzberg, Betsy Ferguson, 2014, Biology Direct.

Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii , a progenitor of bread wheat , with the mega-reads algorithm

Sergey Koren, Guillaume Marçais, Steven L Salzberg, 2016 .

Masked Minimizers: Unifying sequence sketching methods

G. Marçais, Carl Kingsford, Minh Hoang, 2022, bioRxiv.

BIOINFORMATICS A fast, lock-free approach for efﬁcient parallel counting of occurrences of k -mers

G. Marçais, Carl Kingsford, 2011 .

No evidence of an association between mitochondrial DNA variants and osteoarthritis in 7393 cases and 5122 controls

James A. Yorke, Guillaume Marçais, Aleksey V. Zimin, 2012, Annals of the rheumatic diseases.

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

Carl Kingsford, Guillaume Marçais, G. Marçais, 2011, Bioinform..

Sketching and Sublinear Data Structures in Genomics

Carl Kingsford, Guillaume Marçais, Rob Patro, 2019, Annual Review of Biomedical Data Science.

The MaSuRCA genome assembler

Michael Roberts, Steven Salzberg, James A. Yorke, 2013, Bioinform..

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

Le-Shin Wu, Guillaume Marçais, Mark Yandell, 2014, Genome Biology.

MUMmer4: A fast and versatile genome alignment system

Adam M. Phillippy, Steven Salzberg, Guillaume Marçais, 2018, PLoS Comput. Biol..

Practical universal k-mer sets for minimizer schemes

Carl Kingsford, Guillaume Marçais, Dan F. DeBlasio, 2019, bioRxiv.

Asymptotically optimal minimizers schemes

Carl Kingsford, Guillaume Marçais, Dan F. DeBlasio, 2018, bioRxiv.

Improving the performance of minimizers and winnowing schemes

Ron Shamir, Carl Kingsford, Guillaume Marçais, 2017, bioRxiv.

Title of thesis: GENOME ASSEMBLY TECHNIQUES

James A. Yorke, Carl Kingsford, Guillaume Marçais, 2011 .

Genome Assembly Techniques

Guillaume Marçais, G. Marçais, 2011 .

De novo assembly of human genomes with massively parallel short Material Supplemental

M. Schatz, S. Salzberg, S. Koren, 2010 .

Parsimonious reconstruction of network evolution

Robert Patro, Carl Kingsford, Emre Sefer, 2011, Algorithms for Molecular Biology.

[Atypical Addison's disease associated with erythroderma].

G. Marçais, A. Puissant, B. Duperrat, 1971, Bulletin de la Societe francaise de dermatologie et de syphiligraphie.

An Automated Benchmarking Toolset

Alan Mink, Guillaume Marçais, Michel Courson, 2000, HPCN Europe.

Harvestman: a framework for hierarchical feature learning and selection from whole genome sequencing data

Christopher James Langmead, Guillaume Marçais, Carl Kingsford, 2020, bioRxiv.

QuorUM: An Error Corrector for Illumina Reads

James A. Yorke, Guillaume Marçais, Aleksey Zimin, 2013, PloS one.

Locality-sensitive hashing for the edit distance

Prashant Pandey, Carl Kingsford, Guillaume Marçais, 2019, bioRxiv.

Improved design and analysis of practical minimizers

Guillaume Marçais, Carl Kingsford, Hongyu Zheng, 2020, bioRxiv.

Sequence-specific minimizers via polar sets

G. Marçais, Carl Kingsford, Hongyu Zheng, 2021, bioRxiv.

Compact Universal k-mer Hitting Sets

Ron Shamir, Carl Kingsford, Guillaume Marçais, 2016, WABI.

Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm.

S. Salzberg, S. Koren, A. Zimin, 2017, Genome research.

Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing

Ron Shamir, Carl Kingsford, Guillaume Marçais, 2017, PLoS Comput. Biol..

Large scale sequence alignment via efficient inference in generative models

Arash Gholami Davoodi, G. Marçais, Cheng-guo Shen, 2023, Scientific Reports.

GAGE: A critical evaluation of genome assemblies and assembly algorithms.

S. Salzberg, S. Koren, A. Phillippy, 2012, Genome research.