I. Choi

发表

A Soybean Transcript Map: Gene Distribution, Haplotype and Single-Nucleotide Polymorphism Analysis

K. Chase, K. Lark, R. Shoemaker, 2007, Genetics.

Variation block-based genomics method for crop plants

Yun Sung Cho, C. P. Hong, H. Yoon, 2014, BMC Genomics.

Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing

Yeisoo Yu, I. Choi, O. Edwards, 2015, BMC Genomics.

Alternative Splicing Profile and Sex-Preferential Gene Expression in the Female and Male Pacific Abalone Haliotis discus hannai

Mi Ae Kim, I. Choi, J. Rhee, 2017, Genes.

Sequence and structure of Brassica rapa chromosome A3

Hee-Ju Yu, Jeong-Hwan Mun, Sang-Choon Lee, 2010, Genome Biology.

The Hot Pepper (Capsicum annuum) MicroRNA Transcriptome Reveals Novel and Conserved Targets: A Foundation for Understanding MicroRNA Functional Roles in Hot Pepper

C. Shin, I. Choi, D. Choi, 2013, PloS one.

Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species

Yeisoo Yu, Oded Cohen, Ilan Paran, 2014, Nature Genetics.

Fungal and plant gene expression during the colonization of cacao seedlings by endophytic isolates of four Trichoderma species

S. E. Thomas, I. Choi, B. Bailey, 2006, Planta.

Impacts of genetic bottlenecks on soybean genome diversity

Randall L. Nelson, James E. Specht, Randy C. Shoemaker, 2006, Proceedings of the National Academy of Sciences.

High-throughput genotyping with the GoldenGate assay in the complex genome of soybean

R. Shoemaker, P. Cregan, I. Choi, 2008, Theoretical and Applied Genetics.

Single Nucleotide Polymorphisms in Common Bean: Their Discovery and Genotyping Using a Multiplex Detection System

P. Cregan, I. Choi, C. Quigley, 2008 .

The polychaete, Perinereis nuntia ESTs and its use to uncover potential biomarker genes for molecular ecotoxicological studies.

I. Choi, J. Rhee, R. Kim, 2012, Environmental research.

Molecular identification of Allium ochotense and Allium microdictyon using multiplex-PCR based on single nucleotide polymorphisms

I. Choi, Seong-Jin Choi, N. Park, 2018, Horticulture, Environment, and Biotechnology.

Molecular authentication of two medicinal plants Ligularia fischeri and Ligularia stenocephala using allele-specific PCR (AS-PCR) strategy

I. Choi, Seong-Jin Choi, N. Park, 2017, Genes & Genomics.

Generation of albino via SLC45a2 gene targeting by CRISPR/Cas9 in the marine medaka Oryzias melastigma.

I. Choi, S. Bae, Jae-Seong Lee, 2020, Marine pollution bulletin.

Identification of candidate UDP-glycosyltransferases involved in protopanaxadiol-type ginsenoside biosynthesis in Panax ginseng

I. Choi, S. Sung, Dong Young Lee, 2018, Scientific Reports.

Diversity, distribution, and significance of transposable elements in the genome of the only selfing hermaphroditic vertebrate Kryptolebias marmoratus

M. Schartl, I. Choi, Jaebum Kim, 2017, Scientific Reports.

A bioinformatics approach for identifying transgene insertion sites using whole genome sequencing data

I. Choi, Jukon Kim, Su-Hyun Park, 2017, BMC Biotechnology.

Whole genome sequence and genome annotation of Colletotrichum acutatum, causal agent of anthracnose in pepper plants in South Korea

I. Choi, J. Chon, Yong-Hwan Lee, 2016, Genomics data.

Complete Genome Sequence of Mycobacterium intracellulare Clinical Strain MOTT-36Y, Belonging to the INT5 Genotype

Y. Kook, I. Choi, J. Chun, 2012, Journal of bacteriology.

Transcriptome response of the Pacific oyster, Crassostrea gigas susceptible to thermal stress: A comparison with the response of tolerant oyster

I. Choi, Kyobum Kim, J. Rhee, 2017, Molecular & Cellular Toxicology.

Transcriptional profiling of antioxidant defense system and heat shock protein (Hsp) families in the cadmium- and copper-exposed marine ciliate Euplotes crassu

I. Choi, J. Rhee, Bo-Mi Kim, 2017, Genes & Genomics.

Thermal stress induces a distinct transcriptome profile in the Pacific oyster Crassostrea gigas.

I. Choi, J. Rhee, Bo-Mi Kim, 2016, Comparative biochemistry and physiology. Part D, Genomics & proteomics.

HspA and HtpG enhance thermotolerance in the cyanobacterium, Microcystis aeruginosa NIES-298.

I. Choi, Jang-Seu Ki, J. Rhee, 2012, Journal of microbiology and biotechnology.

Detection of mPing mobilization in transgenic rice plants

I. Choi, Doori Park, Nam-Soo Kim, 2019, Genes & Genomics.

Expression profile analysis of antioxidative stress and developmental pathway genes in the manganese-exposed intertidal copepod Tigriopus japonicus with 6K oligochip.

I. Choi, Jang-Seu Ki, J. Rhee, 2013, Chemosphere.

A Soybean Transcript Map: Gene Distribution, Haplotype and SNP Analysis

K. Chase, K. Lark, R. Shoemaker, 2007 .

Omics of the marine medaka (Oryzias melastigma) and its relevance to marine environmental research.

I. Choi, Jaebum Kim, K. Leung, 2016, Marine environmental research.

Transcriptome profiling of the Pacific oyster Crassostrea gigas by Illumina RNA-seq

I. Choi, J. Rhee, Beom-Soon Choi, 2016, Genes & Genomics.

Characterization of chloroplast genomes of Alnus rubra and Betula cordifolia, and their use in phylogenetic analyses in Betulaceae

I. Choi, Doori Park, A. Choi, 2018, Genes & Genomics.

The complete mitochondrial genome sequence of the ascomycete plant pathogen Colletotrichum acutatum

I. Choi, Yong-Hwan Lee, Joon-Oh Kim, 2016, Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis.

Effect of germination environment on the biochemical compounds and anti-inflammatory properties of soybean cultivars

I. Choi, Jae Wook Lee, N. Park, 2020, PloS one.

A Comparative Study of Phenolic Antioxidant Activity and Flavonoid Biosynthesis-Related Gene Expression Between Summer and Winter Strawberry Cultivars.

I. Choi, S. Park, Doori Park, 2017, Journal of food science.

Sequence analysis of genomic DNA (680 Mb) by GS-FLX-Titanium sequencer in the monogonont rotifer, Brachionus ibericus

I. Choi, J. Rhee, R. Kim, 2011, Hydrobiologia.

Comparative genomics of Japanese Erwinia pyrifoliae strain Ejp617 with closely related erwinias.

I. Choi, Beom-Soon Choi, Jongsung Lim, 2013, Genome.

Transcriptome profiling of larvae of the marine medaka Oryzias melastigma by Illumina RNA-seq.

I. Choi, J. Rhee, Bo-Mi Kim, 2015, Marine genomics.

RNA-Seq De Novo Assembly and Differential Transcriptome Analysis of Korean Medicinal Herb Cirsium japonicum var. spinossimum

I. Choi, A. Choi, Jung-A Kim, 2018, Genomics & informatics.

Transcriptome information of the Arctic green sea urchin and its use in environmental monitoring

I. Choi, J. Rhee, Bo-Mi Kim, 2014, Polar Biology.

The genome of the marine medaka Oryzias melastigma

I. Choi, Jaebum Kim, Jae-Seong Lee, 2018, Molecular ecology resources.

Genome-wide identification of 194 G protein-coupled receptor (GPCR) genes from the water flea Daphnia magna.

I. Choi, A. Sayed, Jae-Seong Lee, 2022, Comparative biochemistry and physiology. Part D, Genomics & proteomics.

Molecular identification of Allium ochotense and Allium microdictyon using multiplex-PCR based on single nucleotide polymorphisms

I. Choi, N. Park, Kyong-Cheul Park, 2018, Horticulture, Environment, and Biotechnology.

Molecular authentication of two medicinal plants Ligularia fischeri and Ligularia stenocephala using allele-specific PCR (AS-PCR) strategy

I. Choi, N. Park, Kyong-Cheul Park, 2017, Genes & Genomics.

Transcriptome analysis of Asparagus officinalis reveals genes involved in the biosynthesis of rutin and protodioscin

I. Choi, N. Park, T. Yi, 2019, PloS one.

Genome-wide transcriptome profiling of the medicinal plant Zanthoxylum planispinum using a single-molecule direct RNA sequencing approach.

I. Choi, Beom-Soon Choi, A. Choi, 2019, Genomics.

Comparison of Metabolite Levels and Antioxidant Activity Among Pepper Cultivars

I. Choi, N. Park, Yeri Park, 2019, Korean Journal of Breeding Science.

Genomics-Assisted Breeding

I. Choi, Tae-Jin Yang, G. Yi, 2015 .

De novo assembly and characterization of transcriptome in the medicinal plant Euphorbia jolkini

I. Choi, Jung-A Kim, N. Park, 2020, Genes & Genomics.

Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing

Yeisoo Yu, I. Choi, O. Edwards, 2015, BMC Genomics.

The comparative gene expression concern to the seed pigmentation in maize (Zea mays L.)

I. Choi, Ju Kyong Lee, K. J. Sa, 2020, Genomics & informatics.

Transcriptome analysis of astringent ‘Cheongdo-Bansi’ persimmon fruit treated with ethylene for removal of astringency

I. Choi, Kyong-Cheul Park, D. Park, 2019, Postharvest Biology and Technology.

Defining the genome structure of `Tongil' rice, an important cultivar in the Korean "Green Revolution"

I. Choi, Dong-Gwan Kim, Beom-Soon Choi, 2014, Rice.

miRAuto: An automated user-friendly MicroRNA prediction tool utilizing plant small RNA sequencing data

C. Shin, I. Choi, Jeongsoo Lee, 2013, Molecules and cells.

SNP-PHAGE – High throughput SNP discovery pipeline

John J. Grefenstette, Lakshmi K. Matukumalli, Curtis P. Van Tassell, 2006, BMC Bioinformatics.

A high density integrated genetic linkage map of soybean and the development of a 1536 universal soy linkage panel for quantitative trait locus mapping.

Thomas E. Carter, Lakshmi K. Matukumalli, James E. Specht, 2010 .

BARCSoySNP23: a panel of 23 selected SNPs for soybean cultivar identification

P. Cregan, I. Choi, D. Hyten, 2007, Theoretical and Applied Genetics.

Analysis of expressed sequence tags from the liver and ovary of the euryhaline hermaphroditic fish, Kryptolebias marmoratus.

I. Choi, J. Rhee, Bo-Mi Kim, 2011, Comparative biochemistry and physiology. Part D, Genomics & proteomics.

Transcriptome response of the Pacific oyster, Crassostrea gigas susceptible to thermal stress: A comparison with the response of tolerant oyster

I. Choi, Kyobum Kim, J. Rhee, 2017, Molecular & Cellular Toxicology.

Genomic analysis and a consensus chloroplast genome sequence of Prunus yedoensis for DNA marker development

I. Choi, E. Cheong, N. Roy, 2020, Horticulture, Environment, and Biotechnology.

Corrigendum to “Characterization of wild Prunus yedoensis analyzed by inter-simple sequence repeat and chloroplast DNA” [Sci. Hortic. (2007) 121–128]

I. Choi, M. Roh, E. Cheong, 2015 .

Characterization of wild Prunus yedoensis analyzed by inter-simple sequence repeat and chloroplast DNA

I. Choi, M. Roh, E. Cheong, 2007 .

Multiple Genes Related to Muscle Identified through a Joint Analysis of a Two-stage Genome-wide Association Study for Racing Performance of 1,156 Thoroughbreds

I. Choi, Heebal Kim, Jong-Eun Park, 2015, Asian-Australasian journal of animal sciences.

Effects of benzo[a]pyrene on whole cytochrome P450-involved molecular responses in the marine medaka Oryzias melastigma.

Su-Jae Lee, I. Choi, J. Rhee, 2014, Aquatic toxicology.

Chloroplast genomes of Lilium lancifolium, L. amabile, L. callosum, and L. philadelphicum: Molecular characterization and their use in phylogenetic analysis in the genus Lilium and other allied genera in the order Liliales

I. Choi, P. Ryser, Nam-Soo Kim, 2017, PloS one.

The C- and G-value paradox with polyploidy, repeatomes, introns, phenomes and cell economy

I. Choi, Nam-Soo Kim, Eun-Chae Kwon, 2020, Genes & Genomics.

Whole transcriptome analysis of the monogonont rotifer Brachionus koreanus provides molecular resources for developing biomarkers of carbohydrate metabolism.

I. Choi, J. Rhee, Jae-Seong Lee, 2015, Comparative biochemistry and physiology. Part D, Genomics & proteomics.

Marine medaka ATP-binding cassette (ABC) superfamily and new insight into teleost Abch nomenclature

I. Choi, J. Rhee, Bo-Mi Kim, 2015, Scientific Reports.

The genome of the freshwater monogonont rotifer Brachionus calyciflorus

I. Choi, Jae-Seong Lee, Dae-sik Hwang, 2018, Molecular ecology resources.

Gene set by de novo assembly of Perilla species and expression profiling between P. frutescens (L.) var. frutescens and var. crispa.

W. Tong, I. Choi, Soon-Jae Kwon, 2015, Gene.

Genome analysis of Hibiscus syriacus provides insights of polyploidization and indeterminate flowering in woody plants

Ryan W. Kim, I. Choi, D. Choi, 2016, DNA research : an international journal for rapid publication of reports on genes and genomes.

Survey of the Applications of NGS to Whole-Genome Sequencing and Expression Profiling

C. Shin, I. Choi, J. Rhee, 2012, Genomics & informatics.

Genotype Fingerprinting, Differentiation and Association between Morphological Traits and SSR Loci of Soybean Landraces

I. Choi, Q. Song, Nam-Soo Kim, 1998 .

High-throughput SNP discovery and assay development in common bean

P. Cregan, I. Choi, D. Hyten, 2010, BMC Genomics.

Shotgun proteomic analysis for detecting differentially expressed proteins in the reduced culm number rice

I. Choi, Soon-Wook Kwon, H. Koh, 2011, Proteomics.

NGS sequencing reveals that many of the genetic variations in transgenic rice plants match the variations found in natural rice population

I. Choi, Jukon Kim, Beom-Soon Choi, 2018, Genes & Genomics.

Defining the genome structure of `Tongil' rice, an important cultivar in the Korean "Green Revolution"

I. Choi, Dong-Gwan Kim, Beom-Soon Choi, 2014, Rice.

Genome Sequence of Pectobacterium carotovorum subsp. carotovorum Strain PCC21, a Pathogen Causing Soft Rot in Chinese Cabbage

I. Choi, S. Heu, Beom-Soon Choi, 2012, Journal of bacteriology.

Whole spectrum of cytochrome P450 genes and molecular responses to water-accommodated fractions exposure in the marine medaka.

I. Choi, D. Nelson, J. Rhee, 2013, Environmental science & technology.

Variation block-based genomics method for crop plants

Yun Sung Cho, C. P. Hong, H. Yoon, 2014, BMC Genomics.

Draft genome database construction from four strains (NIES-298, FCY- 26, -27, and -28) of the cyanobacterium Microcystis aeruginosa.

I. Choi, J. Rhee, Jae-Seong Lee, 2012, Journal of microbiology and biotechnology.

RNA-seq based whole transcriptome analysis of the cyclopoid copepod Paracyclopina nana focusing on xenobiotics metabolism.

I. Choi, Jae-Seong Lee, Beom-Soon Choi, 2015, Comparative biochemistry and physiology. Part D, Genomics & proteomics.

Highly Variable Patterns of Linkage Disequilibrium in Multiple Soybean Populations

Randall L. Nelson, James E. Specht, Randy C. Shoemaker, 2007, Genetics.

Comparative Gene Expression Analysis of Seed Development in Waxy and Dent Corn (Zea mays L.)

I. Choi, Ju Kyong Lee, D. Park, 2018, Plant Breeding and Biotechnology.

A Genome-wide Scan for Selective Sweeps in Racing Horses

I. Choi, Heebal Kim, Sunjin Moon, 2015, Asian-Australasian journal of animal sciences.

Complete Genome Sequence of Mycobacterium bovis BCG Korea, the Korean Vaccine Strain for Substantial Production

Young Kil Park, I. Choi, H. Kim, 2013, Genome Announcements.

Genetic diversity and population structure among accessions of Perilla frutescens (L.) Britton in East Asia using new developed microsatellite markers

I. Choi, Kyong-Cheul Park, Ju Kyong Lee, 2018, Genes & Genomics.

Characterization of Gene Isoforms Related to Cellulose and Lignin Biosynthesis in Kenaf (Hibiscus cannabinus L.) Mutant

I. Choi, Soon-Jae Kwon, Joon-Woo Ahn, 2020, Plants.

Development and Characterization of New Microsatellite Markers for Perilla frutescens (L.) Britton

I. Choi, Kyong-Cheul Park, Ju Kyong Lee, 2019, American Journal of Plant Sciences.

Identification and analysis of whole microcystin synthetase genes from two Korean strains of the cyanobacterium Microcystis aeruginosa

I. Choi, H. Dahms, J. Rhee, 2012, Genes & Genomics.

The complete chloroplast genome of a fern genus Thelypteris interrupta

I. Choi, E. Cheong, Kyong-Cheul Park, 2020, Mitochondrial DNA. Part B, Resources.

The complete chloroplast genome of a Woodwardia japonica

I. Choi, E. Cheong, Kyong-Cheul Park, 2019, Mitochondrial DNA. Part B, Resources.

Dynamic genetic features of chromosomes revealed by comparison of soybean genetic and sequence-based physical maps

I. Choi, Sang Cheol Kim, Namshin Kim, 2013, Theoretical and Applied Genetics.

Abnormal leaf formation in soybean: genetic and environmental effects

K. Chase, K. Lark, P. Cregan, 2006, Theoretical and Applied Genetics.

Understanding pathogenic Burkholderia glumae metabolic and signaling pathways within rice tissues through in vivo transcriptome analyses.

I. Choi, Dong-Soo Park, Y. Seo, 2014, Gene.

Complete Genome Sequence of the Fenitrothion-Degrading Burkholderia sp. Strain YI23

Dong In Kim, I. Choi, Beom-Soon Choi, 2012, Journal of bacteriology.

EST sequencing and gene expression profiling in Scutellaria baicalensis

I. Choi, S. Park, Mi Young Lee, 2014, EXCLI journal.

Pulsatilla tongkangensis, a Natural Hybrid Swarm Population Hybridized with P. koreana Based on RAPD and SNPs of Chloroplast DNA

I. Choi, T. Yuan, J. Ko, 2010 .

Identification of candidate UDP-glycosyltransferases involved in protopanaxadiol-type ginsenoside biosynthesis in Panax ginseng

I. Choi, S. Sung, Dong Young Lee, 2018, Scientific Reports.

Complete Genome Sequence of Japanese Erwinia Strain Ejp617, a Bacterial Shoot Blight Pathogen of Pear

I. Choi, Beom-Soon Choi, Jongsung Lim, 2010, Journal of bacteriology.

The complete chloroplast genome of a Korean endemic species Sophora koreensis, Nakai