J. Jaeger

发表

Dynamic control of positional information in the early Drosophila embryo

David H. Sharp, Manu, D. Sharp, 2004, Nature.

A damped oscillator imposes temporal order on posterior gap gene expression in Drosophila

Karl R. Wotton, J. Jaeger, H. Janssens, 2017, bioRxiv.

Dynamical Analysis of Regulatory Interactions in the Gap Gene System of Drosophila melanogaster

David H. Sharp, Manu, D. Sharp, 2004, Genetics.

Drosophila blastoderm patterning.

Manu, J. Reinitz, J. Jaeger, 2012, Current opinion in genetics & development.

Lack of tailless leads to an increase in expression variability in Drosophila embryos

Anton Crombach, Johannes Jaeger, Damjan Cicin-Sain, 2013, Developmental biology.

A cellular oscillator model for periodic pattern formation.

B C Goodwin, B. Goodwin, J. Jaeger, 2001, Journal of theoretical biology.

Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene

David H. Sharp, Johannes Jaeger, John Reinitz, 2006, Nature Genetics.

Cellular and Molecular Life Sciences REVIEW The gap gene network

Johannes Jaeger, J. Jaeger, 2022 .

Dynamic positional information: Patterning mechanism versus precision in gradient-driven systems.

J. Jaeger, Berta Verd, Johannes Jaeger, 2020, Current topics in developmental biology.

Gap Gene Regulatory Dynamics Evolve along a Genotype Network

Karl R. Wotton, J. Jaeger, Eva Jiménez-Guri, 2015, bioRxiv.

The Comet Cometh: Evolving Developmental Systems

M. Laubichler, J. Jaeger, W. Callebaut, 2015, Biological theory.

Gap gene regulatory dynamics evolve along a genotype network

Karl R. Wotton, J. Jaeger, Eva Jiménez-Guri, 2015, bioRxiv.

Bioattractors: dynamical systems theory and the evolution of regulatory processes

N. Monk, J. Jaeger, 2014, The Journal of physiology.

Dynamic Maternal Gradients Control Timing and Shift-Rates for Drosophila Gap Gene Expression

J. Jaeger, Berta Verd, Anton Crombach, 2016, bioRxiv.

The inheritance of process: a dynamical systems approach.

N. Monk, J. Jaeger, D. Irons, 2012, Journal of experimental zoology. Part B, Molecular and developmental evolution.

A quantitative validated model reveals two phases of transcriptional regulation for the gap gene giant in Drosophila.

J. Jaeger, D. Cicin-Sain, Astrid Hoermann, 2016, Developmental biology.

Modelling the Drosophila embryo.

Johannes Jaeger, J. Jaeger, Johannes Jaeger, 2009, Molecular bioSystems.

A quantitative atlas of Even-skipped and Hunchback expression in Clogmia albipunctata (Diptera: Psychodidae) blastoderm embryos

Johannes Jaeger, Damjan Cicin-Sain, Hilde Janssens, 2014, EvoDevo.

The Importance of Being Dynamic: Systems Biology Beyond the Hairball

J. Jaeger, Johannes Jaeger, 2017 .

Pattern formation and nuclear divisions are uncoupled in Drosophila segmentation: comparison of spatially discrete and continuous models

Johannes Jaeger, Alexander M. Samsonov, John Reinitz, 2004 .

Comparative transcriptomics of early dipteran development

Jaime Huerta-Cepas, Johannes Jaeger, Toni Gabaldón, 2013, BMC Genomics.

Maternal Co-ordinate Gene Regulation and Axis Polarity in the Scuttle Fly Megaselia abdita

Karl R. Wotton, J. Jaeger, Eva Jiménez-Guri, 2015, PLoS genetics.

Getting the Measure of Positional Information

Johannes Jaeger, A. Martinez-Arias, J. Jaeger, 2009, PLoS biology.

Regulative feedback in pattern formation: towards a general relativistic theory of positional information

Johannes Jaeger, N. Monk, J. Jaeger, 2008, Development.

Explanatory Integration Challenges in Evolutionary Systems Biology

J. Jaeger, Sara Green, M. Fagan, 2015 .

Genetic Causation in Complex Regulatory Systems: An Integrative Dynamic Perspective

J. Jaeger, J. DiFrisco, Johannes Jaeger, 2020, BioEssays : news and reviews in molecular, cellular and developmental biology.

On the concept of mechanism in development

Johannes Jaeger, James Sharpe, J. Sharpe, 2014 .

High-resolution gene expression data from blastoderm embryos of the scuttle fly Megaselia abdita

Karl R. Wotton, J. Jaeger, Eva Jiménez-Guri, 2015, Scientific data.

Everything flows

N. Monk, J. Jaeger, 2015, EMBO reports.

A damped oscillator imposes temporal order on posterior gap gene expression in Drosophila

Karl R. Wotton, J. Jaeger, H. Janssens, 2017, bioRxiv.

Dynamical Modularity of the Genotype-Phenotype Map

J. Jaeger, Nick Monk, Johannes Jaeger, 2021, Evolutionary Systems Biology.

How Organisms Come to Know the World: Fundamental Limits on Artificial General Intelligence

S. Kauffman, A. Roli, J. Jaeger, 2021, Frontiers in Ecology and Evolution.

The origin of RNA interference: Adaptive or neutral evolution?

J. Jaeger, Thomas Pradeu, A. Torri, 2022, PLoS biology.

Dynamical modules in metabolism, cell and developmental biology

J. Jaeger, Nick Monk, Johannes Jaeger, 2021, Interface Focus.

Reverse engineering a gene network using an asynchronous parallel evolution strategy

Johannes Jaeger, Luke Jostins, J. Jaeger, 2010, BMC Systems Biology.

Parameter estimation and determinability analysis applied to Drosophila gap gene circuits

Johannes Jaeger, Joke G. Blom, Maksat Ashyraliyev, 2008, BMC Systems Biology.

Explanatory Integration Challenges in Evolutionary Systems Biology

J. Jaeger, Sara Green, M. Fagan, 2014, Biological Theory.

Modularity, criticality, and evolvability of a developmental gene regulatory network

Johannes Jaeger, Berta Verd, Nicholas Am Monk, 2018, bioRxiv.

Modularity, criticality and evolvability of a developmental gene regulatory network

Berta Verd, Johannes Jaeger, Nicholas A.M. Monk, 2018, bioRxiv.

Homology of process: developmental dynamics in comparative biology

J. Jaeger, J. DiFrisco, Johannes Jaeger, 2021, Interface Focus.

Cellular oscillators in animal segmentation

Johannes Jaeger, Brian C. Goodwin, B. Goodwin, 2002, Silico Biol..

Beyond networks: mechanism and process in evo-devo

Johannes Jaeger, James DiFrisco, J. Jaeger, 2019, Biology & Philosophy.

Gene Circuit Analysis of the Terminal Gap Gene huckebein

Johannes Jaeger, Joke G. Blom, Maksat Ashyraliyev, 2009, PLoS Comput. Biol..

Classification of transient behaviours in a time-dependent toggle switch model

Anton Crombach, Johannes Jaeger, Berta Verd, 2014, BMC Systems Biology.

Life’s Attractors Continued: Progress in Understanding Developmental Systems Through Reverse Engineering and In Silico Evolution

J. Jaeger, Anton Crombach, Johannes Jaeger, 2021, Evolutionary Systems Biology.

The Comet Cometh: Evolving Developmental Systems

M. Laubichler, J. Jaeger, W. Callebaut, 2015, Biological theory.

Quantitative system drift compensates for altered maternal inputs to the gap gene network of the scuttle fly Megaselia abdita

Anton Crombach, Johannes Jaeger, Steffen Lemke, 2014, eLife.

Non-canonical dorsoventral patterning in the moth midge Clogmia albipunctata

Karl R. Wotton, J. Jaeger, Eva Jiménez-Guri, 2017, EvoDevo.

A Staging Scheme for the Development of the Moth Midge Clogmia albipunctata

Johannes Jaeger, Karl R. Wotton, Eva Jiménez-Guri, 2014, PloS one.

Life's attractors : understanding developmental systems through reverse engineering and in silico evolution.

Anton Crombach, Johannes Jaeger, J. Jaeger, 2012, Advances in experimental medicine and biology.

A systematic analysis of the gap gene system in the moth midge Clogmia albipunctata.

Mónica A. García-Solache, Johannes Jaeger, Michael Akam, 2010, Developmental biology.

tarsal-less is expressed as a gap gene but has no gap gene phenotype in the moth midge Clogmia albipunctata

Karl R. Wotton, J. Jaeger, Eva Jiménez-Guri, 2018, bioRxiv.

Functional divergence between eyeless and twin of eyeless in Drosophila melanogaster

J. Jaeger, W. Gehring, C. Punzo, 2004, Development.

Reverse-Engineering Post-Transcriptional Regulation of Gap Genes in Drosophila melanogaster

Eva Balsa-Canto, Julio R. Banga, Johannes Jaeger, 2013, PLoS Comput. Biol..

Evolution of early development in dipterans: Reverse-engineering the gap gene network in the moth midge Clogmia albipunctata (Psychodidae)

Anton Crombach, Mónica A. García-Solache, Johannes Jaeger, 2014, Biosyst..

Shift happens: The developmental and evolutionary dynamics of the gap gene system

Johannes Jaeger, J. Jaeger, Johannes Jaeger, 2018, Current Opinion in Systems Biology.

Efficient Reverse-Engineering of a Developmental Gene Regulatory Network

Anton Crombach, Johannes Jaeger, Maksat Ashyraliyev, 2012, PLoS Comput. Biol..

Reverse Engineering the Gap Gene Network of Drosophila melanogaster

Leon Glass, Theodore J. Perkins, Johannes Jaeger, 2006, PLoS Comput. Biol..

A matter of timing and precision

J. Jaeger, 2010, Molecular systems biology.

A high-throughput method for quantifying gene expression data from early Drosophila embryos

Johannes Jaeger, John Reinitz, Hilde Janssens, 2005, Development Genes and Evolution.

A Staging Scheme for the Development of the Scuttle Fly Megaselia abdita

Johannes Jaeger, Karl R. Wotton, Eva Jiménez-Guri, 2014, PloS one.

Neither fish nor fowl

J. Jaeger, 2010 .

On the dynamic nature of positional information.

Johannes Jaeger, John Reinitz, J. Reinitz, 2006, BioEssays : news and reviews in molecular, cellular and developmental biology.

Medium-Throughput Processing of Whole Mount In Situ Hybridisation Experiments into Gene Expression Domains

Anton Crombach, Johannes Jaeger, Damjan Cicin-Sain, 2012, PloS one.

Known maternal gradients are not sufficient for the establishment of gap domains in Drosophila melanogaster

David H. Sharp, Johannes Jaeger, John Reinitz, 2007, Mechanisms of Development.

Molecular basis for the inhibition of Drosophila eye development by Antennapedia

J. Jaeger, W. Gehring, S. Plaza, 2001, The EMBO journal.

Drawing to Extend Waddington's Epigenetic Landscape

J. Jaeger, Berta Verd, Gemma Anderson, 2020, Leonardo.

BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology

Eva Balsa-Canto, David Henriques, Julio Saez-Rodriguez, 2015, BMC Systems Biology.

Evolution and expression of BMP genes in flies

Johannes Jaeger, Karl R. Wotton, J. Jaeger, 2013, Development Genes and Evolution.

BioPreDyn-bench: benchmark problems for kinetic modelling in systems biology pdf

Eva Balsa-Canto, David Henriques, Julio Saez-Rodriguez, 2014, ArXiv.

The Fourth Perspective: Evolution and Organismal Agency

J. Jaeger, Johannes Jaeger, 2021 .

Two consecutive microtubule-based epithelial seaming events mediate dorsal closure in the scuttle fly Megaselia abdita

J. Jaeger, J. Solon, J. Fraire-Zamora, 2017, bioRxiv.

Artificial intelligence is algorithmic mimicry: why artificial "agents" are not (and won't be) proper agents

J. Jaeger, 2023, ArXiv.

Non-canonical dorsoventral patterning in the moth midge Clogmia albipunctata

Karl R. Wotton, J. Jaeger, Eva Jiménez-Guri, 2017, EvoDevo.

Dynamic Maternal Gradients Control Timing and Shift-Rates for Drosophila Gap Gene Expression

Anton Crombach, Johannes Jaeger, Berta Verd, 2016, bioRxiv.

Everything flows

N. Monk, J. Jaeger, 2015, EMBO reports.

Artificial intelligence is algorithmic mimicry: why artificial "agents" are not (and won't be) proper agents

J. Jaeger, Johannes Jaeger, 2023, Neurons, Behavior, Data analysis, and Theory.

Supplementary Tables

J. Jaeger, H. Janssens, M. Samsonova, 2010 .

MODELING APPROACHES IN EMBRYO DEVELOPMENT

M. Ibañes, J. Jaeger, J. Buceta, 2011 .