Antonio Jimeno-Yepes

发表

Data-poor categorization and passage retrieval for Gene Ontology Annotation in Swiss-Prot

Patrick Ruch, Frédéric Ehrler, Antonio Jimeno-Yepes, 2005, BMC Bioinformatics.

Assessment of disease named entity recognition on a corpus of annotated sentences

Dietrich Rebholz-Schuhmann, Rafael Berlanga Llavori, Antonio Jimeno-Yepes, 2008, BMC Bioinformatics.

TOWARDS ENRICHMENT OF A BIOMEDICAL ONTOLOGY BASED ON TEXT MINING 1

D. Rebholz-Schuhmann, Ernesto Jiménez-Ruiz, Antonio Jimeno-Yepes, 2007 .

Workshop on Exploiting Semantic Annotations in Information Retrieval ( ESAIR 2009 )

A. Smeaton, D. Rebholz-Schuhmann, X. Amatriain, 2009 .

The NLM Medical Text Indexer System for Indexing Biomedical Literature

Antonio Jimeno-Yepes, Alan R. Aronson, James G. Mork, 2013, BioASQ@CLEF.

Automatic algorithm selection for MeSH Heading indexing based on meta-learning

Antonio Jimeno-Yepes, 2011 .

Understanding in Artificial Intelligence pdf

Antonio Jimeno-Yepes, Ying Xu, Stefan Maetschke, 2021, ArXiv.

Confidence penalty, annealing Gaussian noise and zoneout for biLSTM-CRF networks for named entity recognition pdf

Antonio Jimeno-Yepes, Antonio Jimeno-Yepes, 2018, ArXiv.

Neural Relation Extraction from Biomedical Literature

Antonio Jimeno-Yepes, Elaheh ShafieiBavani, Antonio Jimeno-Yepes, 2019, AMIA.

A MultiCenter Analysis of Factors Associated with Hearing Outcome for 2,735 Adults with Cochlear Implants

A. Büchner, R. Gifford, M. Gambhir, 2021, Trends in hearing.

GeneRIF indexing: sentence selection based on machine learning

Antonio Jimeno-Yepes, Alan R. Aronson, James G. Mork, 2013, BMC Bioinformatics.

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus

Laura Inés Furlong, Walter Daelemans, Dietrich Rebholz-Schuhmann, 2011, Semantic Mining in Biomedicine.

Literature mining of genetic variants for curation: quantifying the importance of supplementary material

Karin M. Verspoor, Antonio Jimeno-Yepes, Antonio Jimeno-Yepes, 2014, Database J. Biol. Databases Curation.

Identifying Diseases, Drugs, and Symptoms in Twitter

Qiang Chen, Bo Han, Andrew MacKinlay, 2015, MedInfo.

Annotating the biomedical literature for the human variome

Karin M. Verspoor, Antonio Jimeno-Yepes, Lawrence Cavedon, 2013, Database J. Biol. Databases Curation.

Predictive models for cochlear implant outcomes: Performance, generalizability, and the impact of cohort size.

R. Gifford, Antonio Jimeno-Yepes, R. Eikelboom, 2021, Trends in hearing.

Findings of the 2016 Conference on Machine Translation

Karin M. Verspoor, Philipp Koehn, Lucia Specia, 2016, WMT.

The READ-BioMed Team in LivingNER Task 1 (2022): Adaptation of an English Annotation System to Spanish

Karin M. Verspoor, Antonio Jimeno-Yepes, 2022, IberLEF@SEPLN.

Text processing through Web services: calling Whatizit

Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Sylvain Gaudan, 2008, Bioinform..

PubLayNet: Largest Dataset Ever for Document Layout Analysis

Antonio Jimeno-Yepes, Jianbin Tang, Xu Zhong, 2019, 2019 International Conference on Document Analysis and Recognition (ICDAR).

Elephant in the Room: An Evaluation Framework for Assessing Adversarial Examples in NLP

Jey Han Lau, Antonio Jimeno-Yepes, Ying Xu, 2020, ArXiv.

BioNorm: deep learning-based event normalization for the curation of reaction databases

Qinghua Zheng, Chen Li, Antonio Jimeno-Yepes, 2019, Bioinform..

Evaluating gold standard corpora against gene/protein tagging solutions and lexical resources

Dietrich Rebholz-Schuhmann, Rolf Backofen, Antonio Jimeno-Yepes, 2013, J. Biomed. Semant..

Decoding EEG and LFP signals using deep learning: heading TrueNorth

Antonio Jimeno-Yepes, Benjamin S. Mashford, Isabell Kiral-Kornek, 2016, Conf. Computing Frontiers.

NER for Medical Entities in Twitter using Sequence to Sequence Neural Networks

Antonio Jimeno-Yepes, Andrew MacKinlay, Antonio Jimeno-Yepes, 2016, ALTA.

Investigating Public Health Surveillance using Twitter

Antonio Jimeno-Yepes, Andrew MacKinlay, Bo Han, 2015, BioNLP@IJCNLP.

Findings of the WMT 2019 Biomedical Translation Shared Task: Evaluation for MEDLINE Abstracts and Biomedical Terminologies

K. Bretonnel Cohen, Karin M. Verspoor, Mariana L. Neves, 2019, WMT.

MeSH indexing based on automatically generated summaries

Antonio Jimeno-Yepes, Alan R. Aronson, Laura Plaza, 2013, BMC Bioinformatics.

Ontology refinement for improved information retrieval

Dietrich Rebholz-Schuhmann, Rafael Berlanga Llavori, Antonio Jimeno-Yepes, 2010, Inf. Process. Manag..

Brief Description of COVID-SEE: The Scientific Evidence Explorer for COVID-19 Related Research

Karin M. Verspoor, David Martínez, Antonio Jimeno-Yepes, 2021, ECIR.

Grey-box Adversarial Attack And Defence For Sentiment Classification pdf

Antonio Jimeno-Yepes, Jey Han Lau, Xu Zhong, 2021, NAACL.

Neural-network-based analysis of EEG data using the neuromorphic TrueNorth chip for brain-machine interfaces

Antonio Jimeno-Yepes, Benjamin S. Mashford, Isabell Kiral-Kornek, 2017, IBM J. Res. Dev..

Knowledge-Based Biomedical Word Sense Disambiguation with Neural Concept Embeddings

Antonio Jimeno-Yepes, Ramakanth Kavuluru, Akm Sabbir, 2016, 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering (BIBE).

Extracting Biomedical Events and Modifications Using Subgraph Matching with Noisy Training Data

Karin M. Verspoor, Antonio Jimeno-Yepes, W. John Wilbur, 2013, BioNLP@ACL.

Annotation of protein residues based on a literature analysis: cross-validation against UniProtKb

Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Kevin Nagel, 2009, BMC Bioinformatics.

Findings of the WMT 2017 Biomedical Translation Shared Task

Karin M. Verspoor, Mariana L. Neves, Madeleine Kittner, 2017, WMT.

Image-based table recognition: data, model, and evaluation

Antonio Jimeno-Yepes, Elaheh Shafieibavani, Xu Zhong, 2019, ECCV.

Use of Shared Lexical Resources for Efficient Ontological Engineering

Dietrich Rebholz-Schuhmann, Rafael Berlanga Llavori, Antonio Jimeno-Yepes, 2008, SWAT4LS.

Comparison and combination of several MeSH indexing approaches

Antonio Jimeno-Yepes, Dina Demner-Fushman, Alan R. Aronson, 2013, AMIA.

A One-Size-Fits-All Indexing Method Does Not Exist: Automatic Selection Based on Meta-Learning

Antonio Jimeno-Yepes, Dina Demner-Fushman, Alan R. Aronson, 2012, J. Comput. Sci. Eng..

Exploiting MeSH indexing in MEDLINE to generate a data set for word sense disambiguation

Bridget T. McInnes, Antonio Jimeno-Yepes, Alan R. Aronson, 2011, BMC Bioinformatics.

Reuse of terminological resources for efficient ontological engineering in Life Sciences

Dietrich Rebholz-Schuhmann, Rafael Berlanga Llavori, Antonio Jimeno-Yepes, 2009, BMC Bioinformatics.

Detection of adverse drug reactions using medical named entities on Twitter

Antonio Jimeno-Yepes, Andrew MacKinlay, Hafsah Aamer, 2017, AMIA.

MEDLINE MeSH indexing: lessons learned from machine learning and future directions

Antonio Jimeno-Yepes, Dina Demner-Fushman, Alan R. Aronson, 2012, IHI '12.

Automatic algorithm selection for MeSH Heading indexing based on meta-learning

Antonio Jimeno-Yepes, 2011 .

M3: Multi-level dataset for Multi-document summarisation of Medical studies

Jey Han Lau, K. Verspoor, Timothy Baldwin, 2022, EMNLP.

Forget Me Not: Reducing Catastrophic Forgetting for Domain Adaptation in Reading Comprehension

Jey Han Lau, Antonio Jimeno-Yepes, Ying Xu, 2019, 2020 International Joint Conference on Neural Networks (IJCNN).

Calbc Silver Standard Corpus

Dietrich Rebholz-Schuhmann, Udo Hahn, Elena Beisswanger, 2010, J. Bioinform. Comput. Biol..

Word embeddings and recurrent neural networks based on Long-Short Term Memory nodes in supervised biomedical word sense disambiguation

Antonio Jimeno-Yepes, Antonio Jimeno-Yepes, 2017, J. Biomed. Informatics.

Higher order features and recurrent neural networks based on Long-Short Term Memory nodes in supervised biomedical word sense disambiguation pdf

Antonio Jimeno-Yepes, Antonio Jimeno-Yepes, 2016, ArXiv.

Identification and Analysis of Medical Entity Co-occurrences in Twitter

Antonio Jimeno-Yepes, Andrew MacKinlay, Bo Han, 2015, DTMBIO@CIKM.

Syndromic Surveillance using Generic Medical Entities on Twitter

Antonio Jimeno-Yepes, Pin Huang, Andrew MacKinlay, 2016, ALTA.

Deep Belief Networks and Biomedical Text Categorisation

Qiang Chen, Antonio Jimeno-Yepes, Justin Bedo, 2014, ALTA.

Feature engineering for MEDLINE citation categorization with MeSH

Antonio Jimeno-Yepes, Alan R. Aronson, Jorge Carrillo de Albornoz, 2015, BMC Bioinformatics.

Identifying Publication Types Using Machine Learning

Antonio Jimeno-Yepes, Alan R. Aronson, James G. Mork, 2013, BioASQ@CLEF.

A bottom-up approach to MEDLINE indexing recommendations.

James G. Mork, Alan R Aronson, James G Mork, 2011, AMIA ... Annual Symposium proceedings. AMIA Symposium.

ICDAR 2021 Competition on Scientific Literature Parsing

Antonio Jimeno-Yepes, Douglas Burdick, Xu Zhong, 2021, ICDAR.

The CALBC Silver Standard Corpus for Biomedical Named Entities - A Study in Harmonizing the Contributions from Four Independent Named Entity Taggers

Dietrich Rebholz-Schuhmann, Udo Hahn, Elena Beisswanger, 2010, LREC.

Entity Recognition in Parallel Multi-lingual Biomedical Corpora: The CLEF-ER Laboratory Overview

Dietrich Rebholz-Schuhmann, Fabio Rinaldi, Udo Hahn, 2013, CLEF.

Global Locality in Biomedical Relation and Event Extraction

Antonio Jimeno-Yepes, David Martínez, Elaheh Shafieibavani, 2019, BIONLP.

Parallel Corpora for the Biomedical Domain

Karin M. Verspoor, Mariana L. Neves, Antonio Jimeno-Yepes, 2018, LREC.

The Scielo Corpus: a Parallel Corpus of Scientific Publications for Biomedicine

Mariana L. Neves, Antonio Jimeno-Yepes, Aurélie Névéol, 2016, LREC.

Combining MEDLINE and publisher data to create parallel corpora for the automatic translation of biomedical text

Antonio Jimeno-Yepes, Aurélie Névéol, Élise Prieur, 2013, BMC Bioinformatics.

Measuring prediction capacity of individual verbs for the identification of protein interactions

Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Miguel Arregui, 2010, J. Biomed. Informatics.

PCorral—interactive mining of protein interactions from MEDLINE

Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, 2013, Database J. Biol. Databases Curation.

Preliminary Results for Biomedical Word Sense Disambiguation Based on Semantic Clustering

Rafael Berlanga Llavori, Antonio Jimeno-Yepes, Tamara Martín-Wanton, 2011, 2011 22nd International Workshop on Database and Expert Systems Applications.

O ct 2 01 6 Knowledge-Based Biomedical Word Sense Disambiguation with Neural Concept Embeddings and Distant Supervision A uthors

Antonio Jimeno-Yepes, Ramakanth Kavuluru, 2016 .

Using Biomedical Terminological Resources for Information Retrieval

Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Piotr Pezik, 2009, Information Retrieval in Biomedicine.

Knowledge-based and knowledge-lean methods combined in unsupervised word sense disambiguation

Antonio Jimeno-Yepes, Alan R. Aronson, A. Aronson, 2012, IHI '12.

Studying the correlation between different word sense disambiguation methods and summarization effectiveness in biomedical texts

Antonio Jimeno-Yepes, Alan R. Aronson, Laura Plaza, 2011, BMC Bioinformatics.

Collocation analysis for UMLS knowledge-based word sense disambiguation

Bridget T. McInnes, Antonio Jimeno-Yepes, Alan R. Aronson, 2011, BMC Bioinformatics.

Query Expansion for UMLS Metathesaurus Disambiguation Based on Automatic Corpus Extraction

Antonio Jimeno-Yepes, Alan R. Aronson, A. Aronson, 2010, 2010 Ninth International Conference on Machine Learning and Applications.

Integration of UMLS and MEDLINE in Unsupervised Word Sense Disambiguation

Antonio Jimeno-Yepes, Alan R. Aronson, A. Aronson, 2012, AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text.

Text processing through Web services: calling Whatizit

D. Rebholz-Schuhmann, S. Gaudan, H. Kirsch, 2008, Bioinform..

BioC interoperability track overview

Yifan Peng, Zhiyong Lu, Karin M. Verspoor, 2014, Database J. Biol. Databases Curation.

Temporal Modelling of Geospatial Words in Twitter

Antonio Jimeno-Yepes, Bo Han, Andrew MacKinlay, 2016, ALTA.

MEDLINE as a Parallel Corpus: a Survey to Gain Insight on French-, Spanish- and Portuguese-speaking Authors’ Abstract Writing Practice

Mariana L. Neves, Antonio Jimeno-Yepes, Aurélie Névéol, 2020, LREC.

Findings of the WMT 2017 Biomedical Translation Shared Task

Ondrej Bojar, B. Haddow, C. Grozea, 2017, Conference on Machine Translation.

Findings of the WMT 2018 Biomedical Translation Shared Task: Evaluation on Medline test sets

Karin M. Verspoor, Mariana L. Neves, Madeleine Kittner, 2018, WMT.