Ahmadreza Ghaffarizadeh

发表

Multistable switches and their role in cellular differentiation networks

Nicholas S. Flann, Gregory J. Podgorski, Ahmadreza Ghaffarizadeh, 2014, BMC Bioinformatics.

Sensitivity analysis of energy inputs in crop production using artificial neural networks

M. Omid, Ahmadreza Ghaffarizadeh, A. Khoshroo, 2018, Journal of Cleaner Production.

Exergetic Optimization of Power Generation Systems

H. S. Hamut, Ahmadreza Ghaffarizadeh, P. Ahmadi, 2016 .

Adding Crossover to Extinction-Based Evolutionary Algorithms

Ahmadreza Ghaffarizadeh, Kamelia Ahmadi, M. Eftekhari, 2009, 2009 Second International Conference on Computer and Electrical Engineering.

Computational models of intracellular and intercellular processes in developmental biology

Ahmadreza Ghaffarizadeh, 2014 .

PhysiCell: an Open Source Physics-Based Cell Simulator for 3-D Multicellular Systems

Paul Macklin, Samuel H. Friedman, Ahmadreza Ghaffarizadeh, 2017, bioRxiv.

Topology of a simple artificial neural network Sensitivity analysis of energy inputs in crop production using artificial neural networks

Omid, Mahmoud, Ahmadreza Ghaffarizadeh, 2018 .

Cell death as a trigger for morphogenesis

Christopher D. Johnson, N. Flann, I. Shmulevich, 2018, PloS one.

High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow

Nicholson T. Collier, Samuel H. Friedman, G. An, 2017, bioRxiv.

Multistable switches and their role in cellular differentiation networks

N. Flann, G. Podgorski, Ahmadreza Ghaffarizadeh, 2014, BMC Bioinformatics.

PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems

Randy Heiland, Samuel H. Friedman, Ahmadreza Ghaffarizadeh, 2017, bioRxiv.

Optimization of Combined Cycle Power Plant Using Sequential Quadratic Programming

Pouria Ahmadi, Ahmadreza Ghaffarizadeh, Shoaib Khanmohammadi, 2008 .

Applying attractor dynamics to infer gene regulatory interactions involved in cellular differentiation

Nicholas S. Flann, Gregory J. Podgorski, Ahmadreza Ghaffarizadeh, 2017, Biosyst..

Modeling and Visualizing Cell Type Switching

Nicholas S. Flann, Gregory J. Podgorski, Ahmadreza Ghaffarizadeh, 2014, Comput. Math. Methods Medicine.

Quantifying differences in cell line population dynamics using CellPD

Edmond A. Jonckheere, Samuel H. Friedman, Ahmadreza Ghaffarizadeh, 2016, BMC Systems Biology.

Progress Towards Computational 3-D Multicellular Systems Biology.

Edmond Jonckheere, Samuel H. Friedman, Ahmadreza Ghaffarizadeh, 2016, Advances in experimental medicine and biology.

Quantification of cancer cell migration with an integrated experimental-computational pipeline

Paul Macklin, Ahmadreza Ghaffarizadeh, Edwin F. Juarez, 2017, bioRxiv.

BioFVM: an efficient, parallelized diffusive transport solver for 3-D biological simulations

Samuel H. Friedman, Ahmadreza Ghaffarizadeh, Paul Macklin, 2015, Bioinform..

MultiCellDS: a standard and a community for sharing multicellular data

Alexander G. Fletcher, Roeland M. H. Merks, Jacob G. Scott, 2016, bioRxiv.

Sorting unsigned permutations by reversals using multi-objective evolutionary algorithms with variable size individuals

Nicholas S. Flann, Ahmadreza Ghaffarizadeh, Kamilia Ahmadi, 2011, 2011 IEEE Congress of Evolutionary Computation (CEC).

MultiCellDS: a community-developed standard for curating microenvironment-dependent multicellular data

Alexander G. Fletcher, Roeland M. H. Merks, Jacob G. Scott, 2016, bioRxiv.

Simulating multi-substrate diffusive transport in 3-D tissues with BioFVM

Samuel H. Friedman, Ahmadreza Ghaffarizadeh, P. Macklin, 2015, bioRxiv.

High-throughput microscopy reveals the impact of multifactorial environmental perturbations on colorectal cancer cell growth

Edwin F. Juarez, D. Ruderman, Ahmadreza Ghaffarizadeh, 2021, GigaScience.

Quantitative Trait Loci Mapping Problem: An Extinction-Based Multi-Objective Evolutionary Algorithm Approach

Nicholas S. Flann, Ahmadreza Ghaffarizadeh, Mehdi Eftekhari, 2013, Algorithms.

Thermo‐economic‐environmental multiobjective optimization of a gas turbine power plant with preheater using evolutionary algorithm

Pouria Ahmadi, Ahmadreza Ghaffarizadeh, Mohammad Hassan Saidi, 2011 .

High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow

Justin M. Wozniak, Charles M. Macal, Jonathan Ozik, 2017, BMC Bioinformatics.

Agent-based simulation of large tumors in 3-D microenvironments

Paul Macklin, Samuel H. Friedman, Ahmadreza Ghaffarizadeh, 2015, bioRxiv.