F. Brockman

发表

Modeling methanogenesis with a genome‐scale metabolic reconstruction of Methanosarcina barkeri

Adam M. Feist, T. Ideker, B. Palsson, 2006 .

Subsurface microbiological heterogeneity: current knowledge, descriptive approaches and applications

F. Brockman, C. Murray, 1997 .

Vadose Zone Microbiology

F. Brockman, T. Kieft, S. Bradley, 2003 .

Direct Detection of 16S rRNA in Soil Extracts by Using Oligonucleotide Microarrays

F. Brockman, D. Call, D. Chandler, 2001, Applied and Environmental Microbiology.

DNA microarray analysis of anaerobic Methanosarcina barkeri reveals responses to heat shock and air exposure

Weiwen Zhang, F. Brockman, L. Nie, 2006, Journal of Industrial Microbiology and Biotechnology.

Use of gene probes to assess the impact and effectiveness of aerobic in situ bioremediation of TCE

G. Sayler, F. Brockman, R. Chakraborty, 2009, Archives of Microbiology.

Molecular analysis of deep subsurface Cretaceous rock indicates abundant Fe(III)- and S(zero)-reducing bacteria in a sulfate-rich environment.

F. Brockman, W. Holben, J. Fredrickson, 2006, Environmental microbiology.

Hanford 100-D Area Biostimulation Soluble Substrate Field Test: Interim Data Summary for the Substrate Injection and Process Monitoring Phases of the Field Test

D. P. Mendoza, Fred J. Brockman, Michael J. Truex, 2008 .

Cloning, sequencing, and analysis of a gene cluster from Chelatobacter heintzii ATCC 29600 encoding nitrilotriacetate monooxygenase and NADH:flavin mononucleotide oxidoreductase

F. Brockman, M. Kahn, Y. Xu, 1997, Journal of bacteriology.

Optimization of RNA isolation from the archaebacterium Methanosarcina barkeri and validation for oligonucleotide microarray analysis.

Weiwen Zhang, F. Brockman, D. Culley, 2006, Journal of microbiological methods.

Modeling biofilm biodegradation requiring cosubstrates: The quinoline example

M. J. Malmstead, F. Brockman, A. Valocchi, 1995 .

Post-Sampling Changes in Microbial Community Composition and Activity in a Subsurface Paleosol

S. W. Li, F. Brockman, T. Kieft, 1998, Microbial Ecology.

Recruitment and expression of toluene/trichloroethylene biodegradation genes in bacteria native to deep-subsurface sediments

F. Brockman, M. Romine, 1996, Applied and environmental microbiology.

Plasmid Incidence in Bacteria from Deep Subsurface Sediments

S. W. Li, F. Brockman, J. Fredrickson, 1988, Applied and environmental microbiology.

LC-MS/MS based proteomic analysis and functional inference of hypothetical proteins in Desulfovibrio vulgaris.

Ronald J. Moore, Richard D. Smith, Weiwen Zhang, 2006, Biochemical and biophysical research communications.

Isolation and characterization of quinoline-degrading bacteria from subsurface sediments

F. Brockman, J. Fredrickson, R. J. Hicks, 1989, Applied and environmental microbiology.

A proteomic view of Desulfovibrio vulgaris metabolism as determined by liquid chromatography coupled with tandem mass spectrometry

Ronald J Moore, Marina A Gritsenko, David G Camp, 2006, Proteomics.

Isolation and characterization of RNA from low-biomass deep-subsurface sediments

F. Brockman, J. Fredrickson, W. Sun, 1995, Applied and environmental microbiology.

Grain size and depth constraints on microbial variability in coastal plain subsurface sediments

J. Beauchamp, F. Brockman, C. Murray, 1998 .

Isolation and Characterization of a Subsurface Bacterium Capable of Growth on Toluene, Naphthalene, and Other Aromatic Compounds

S. W. Li, F. Brockman, J. Fredrickson, 1991, Applied and environmental microbiology.

Enumeration of Tn5 mutant bacteria in soil by using a most- probable-number-DNA hybridization procedure and antibiotic resistance

S. W. Li, F. Brockman, D. Bezdicek, 1988, Applied and environmental microbiology.

Ogram A, Sun W, Brockman FJ, Fredrickson JK.. Isolation and characterization of RNA from low-biomass deep-subsurface sediments. Appl Environ Microbiol 61: 763-768

F. Brockman, J. Fredrickson, A. Ogram, 1995 .

High Resolution Definition of Subsurface Heterogeneity for Understanding the Biodynamics of Natural Field Systems: Advancing the Ability for Scaling to Field Conditions

F. Brockman, E. Majer, 1999 .

Effect of Starvation on Induction of Quinoline Degradation for a Subsurface Bacterium in a Continuous-Flow Column

F. Brockman, J. Fredrickson, M. Truex, 1992, Applied and environmental microbiology.

Microbiology of vadose zone paleosols in south-central Washington State

F. Brockman, P. Long, T. Kieft, 1992, Microbial Ecology.

Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth

Dylan Chivian, Alla Lapidus, Eoin L Brodie, 2008, Science.

Impairment of transposon-induced mutants of Rhizobium leguminosarum

F. Brockman, D. Bezdicek, J. Fredrickson, 1991 .

Geomicrobiology of High-Level Nuclear Waste-Contaminated Vadose Sediments at the Hanford Site, Washington State

Fred J. Brockman, John M. Zachara, Margaret F. Romine, 2004, Applied and Environmental Microbiology.

Indigenous and contaminant microbes in ultradeep mines.

D C White, F. Brockman, R. Hoover, 2003, Environmental microbiology.

Global transcriptomics analysis of the Desulfovibrio vulgaris change from syntrophic growth with Methanosarcina barkeri to sulfidogenic metabolism.

Weiwen Zhang, J. Scholten, F. Brockman, 2010, Microbiology.

Global transcriptomic analysis of Desulfovibrio vulgaris on different electron donors

Fred J. Brockman, Weiwen Zhang, J. Scholten, 2006, Antonie van Leeuwenhoek.

Oxidative stress and heat-shock responses in Desulfovibrio vulgaris by genome-wide transcriptomic analysis

Weiwen Zhang, F. Brockman, D. Culley, 2006, Antonie van Leeuwenhoek.

Transport and biodegradation of quinoline in horizontally stratified porous media

F. Brockman, B. Wood, J. Szecsody, 1994 .

Affinity Purification of DNA and RNA from Environmental Samples with Peptide Nucleic Acid Clamps

M. Egholm, K. Anderson, F. Brockman, 2000, Applied and Environmental Microbiology.

Affinity capture and recovery of DNA at femtomolar concentrations with peptide nucleic acid probes.

K. Anderson, F. Brockman, D. Chandler, 2000, Analytical biochemistry.

Deep gold mines of South Africa: windows into the subsurface biosphere

David Balkwill, Tullis C. Onstott, Tommy J. Phelps, 1997, Optics & Photonics.

Desulfotomaculum and Methanobacterium spp. Dominate a 4- to 5-Kilometer-Deep Fault

F. Brockman, B. Baker, D. Balkwill, 2005, Applied and Environmental Microbiology.

mRNA-targeted fluorescent in situ hybridization (FISH) of Gram-negative bacteria without template amplification or tyramide signal amplification.

F. Brockman, W. Chrisler, D. Culley, 2007, Journal of microbiological methods.

Development and assessment of whole-genome oligonucleotide microarrays to analyze an anaerobic microbial community and its responses to oxidative stress.

Kyle J. Munn, Weiwen Zhang, J. Scholten, 2007, Biochemical and biophysical research communications.

A molecular comparison of culturable aerobic heterotrophic bacteria and 16S rDNA clones derived from a deep subsurface sediment

F. Brockman, D. Balkwill, G. R. Drake, 1997 .

Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries

F. Brockman, D. Chandler, J. Fredrickson, 1997, Molecular ecology.

Evolution of the syntrophic interaction between Desulfovibrio vulgaris and Methanosarcina barkeri: Involvement of an ancient horizontal gene transfer.

Weiwen Zhang, J. Scholten, F. Brockman, 2007, Biochemical and biophysical research communications.

Rotating rod renewable microcolumns for automated, solid-phase DNA hybridization studies.

F. Brockman, J. Grate, D. Chandler, 2000, Analytical Chemistry.

Automated nucleic acid isolation and purification from soil extracts using renewable affinity microcolumns in a sequential injection system.

F. Brockman, D. Chandler, C. Bruckner-Lea, 1999, Talanta.

Renewable microcolumns for solid-phase nucleic acid separations and analysis from environmental samples

F. Brockman, J. Grate, D. Chandler, 2000 .

Estimating biodegradative gene numbers at a JP-5 contaminated site using PCR

F. Brockman, D. Chandler, 1996 .

Microbial processes for bioremediation

F. Brockman, R. Hinchee, C. Vogel, 1995 .

Nucleic‐acid‐based methods for monitoring the performance of in situ bioremediation

F. Brockman, 1995 .

Visualization and modeling of the colonization dynamics of a bioluminescent bacterium in variably saturated, translucent quartz sand

John S. Selker, Fred J. Brockman, Mark L. Rockhold, 2007 .

Phylogenetic Diversity of Archaea and Bacteria in a Deep Subsurface Paleosol

F. Brockman, D. Chandler, J. Fredrickson, 1998, Microbial Ecology.

Microbial dynamics in upflow anaerobic sludge blanket (UASB) bioreactor granules in response to short-term changes in substrate feed.

David Culley, Weiwen Zhang, J. Scholten, 2010, Microbiology.

Physiological Diversity and Distributions of Heterotrophic Bacteria in Deep Cretaceous Sediments of the Atlantic Coastal Plain

F. Brockman, D. Balkwill, J. Fredrickson, 1991, Applied and environmental microbiology.

Diversity within Serogroups of Rhizobium leguminosarum biovar viceae in the Palouse Region of Eastern Washington as Indicated by Plasmid Profiles, Intrinsic Antibiotic Resistance, and Topography

F. Brockman, D. Bezdicek, 1989, Applied and environmental microbiology.

Effect of gaseous nitrogen and phosphorus injection on in situ bioremediation of a trichloroethylene-contaminated site

F. Brockman, T. Hazen, W. Payne, 1995 .

Shifts in archaeal communities associated with lithological and geochemical variations in subsurface Cretaceous rock.

F. Brockman, W. Holben, J. Fredrickson, 2003, Environmental microbiology.

Integrated systems for DNA sample preparation and detection in environmental samples

Norman C. Anheier, Jay W. Grate, Cynthia J. Bruckner-Lea, 2000, SPIE Optics East.

Nodulation of Soybean Cultivars with Rhizobium spp. and their Response to Inoculation with R. japonicum 1

H. C. Wien, F. Brockman, E. Pulver, 1982 .

Science to Support DOE Site Cleanup: The Pacific Northwest National Laboratory Environmental Management Science Program Awards -- Fiscal Year 2002 Mid-Year Progress Report

M. S. Greenwood, F. Brockman, Yali Su, 2002 .

Science To Support DOE Site Cleanup: The Pacific Northwest National Laboratory Environmental Management Science Program Awards

F. Brockman, Yali Su, C. Murray, 2001 .

Biogeochemical Considerations and Complexities

F. Brockman, C. Ainsworth, P. Jardine, 2000 .

Microbial abundance and activities in relation to water potential in the vadose zones of arid and semiarid sites

Fred J. Brockman, Thomas L. Kieft, Bruce N. Bjornstad, 1993, Microbial Ecology.

Detecting and genotyping Escherichia coli O157:H7 using multiplexed PCR and nucleic acid microarrays.

F. Brockman, D. Call, D. Chandler, 2001, International journal of food microbiology.

Fabrication of DNA microarrays using unmodified oligonucleotide probes.

F. Brockman, D. Call, D. Chandler, 2001, BioTechniques.

Microbial reduction of hexavalent chromium under vadose zone conditions.

F. Brockman, R. Bowman, T. Kieft, 2003, Journal of environmental quality.

Use of 16S rDNA clone libraries to study changes in a microbial community resulting from ex situ perturbation of a subsurface sediment

F. Brockman, D. Chandler, J. Fredrickson, 1997 .

A Global Perspective on the Microbial Abundance and Activity in the Deep Subsurface

Thomas L. Kieft, Tullis C. Onstott, David L. Balkwill, 1999 .

Microbial community structure and biogeochemistry of Miocene subsurface sediments: implications for long‐term microbial survival

F. Brockman, D. White, D. Ringelberg, 1995 .

Treatability Test Plan for an In Situ Biostimulation Reducing Barrier

Fred J. Brockman, Michael J. Truex, Vince R. Vermeul, 2007 .

Microbiological Comparisons within and across Contiguous Lacustrine, Paleosol, and Fluvial Subsurface Sediments

F. Brockman, T. Phelps, T. Kieft, 1995, Applied and environmental microbiology.

Alexa fluor-labeled fluorescent cellulose nanocrystals for bioimaging solid cellulose in spatially structured microenvironments.

F. Brockman, J. Grate, M. G. Warner, 2015, Bioconjugate chemistry.

Microbiological characteristics of pristine and contaminated deep vadose sediments from an arid region

Fred J. Brockman, Philip E. Long, Thomas L. Kieft, 1993 .

Fungal Genome Sequencing and Bioenergy

J. Heitman, P. D’haeseleer, M. Himmel, 2008 .

Integrated analysis of transcriptomic and proteomic data of Desulfovibrio vulgaris: zero-inflated Poisson regression models to predict abundance of undetected proteins

Gang Wu, Lei Nie, Fred J. Brockman, 2006, Bioinform..

Kinetics of quinoline biodegradation, sorption and desorption in a clay-coated model soil containing a quinoline-degrading bacterium

F. Brockman, J. Szecsody, G. P. Streile, 1992 .

Temporal Shifts in the Geochemistry and Microbial Community Structure of an Ultradeep Mine Borehole Following Isolation

F. Brockman, B. Baker, T. Phelps, 2003 .

Two-Component Signal Transduction Systems of Desulfovibrio vulgaris: Structural and Phylogenetic Analysis and Deduction of Putative Cognate Pairs

Weiwen Zhang, F. Brockman, Gang Wu, 2006, Journal of Molecular Evolution.

Bioinformatic insights from metagenomics through visualization

Christian Posse, Fred J. Brockman, Bobbie-Jo M. Webb-Robertson, 2005, 2005 IEEE Computational Systems Bioinformatics Conference (CSB'05).

Article number: 2006.0004

Adam M. Feist, T. Ideker, F. Brockman, 2022 .

Strong-Sludge Gas Retention and Release Mechanisms in Clay Simulants

Fred J. Brockman, Phillip A. Gauglitz, William C. Buchmiller, 2012 .