A. Witney

E. Behr, M. Sheppard, A. Witney, 2020, Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology.

A two‐component system that controls the expression of pneumococcal surface antigen A (PsaA) and regulates virulence and resistance to oxidative stress in Streptococcus pneumoniae

A. Witney, J. Hinds, T. Mitchell, 2004, Molecular microbiology.

Role of Whole-Genome Sequencing in Characterizing the Mechanism of Action of para-Aminosalicylic Acid and Its Resistance

A. Boa, A. Witney, Timothy D McHugh, 2020, Antimicrobial Agents and Chemotherapy.

Application of Comparative Phylogenomics To Study the Evolution of Yersinia enterocolitica and To Identify Genetic Differences Relating to Pathogenicity

A. Witney, J. Hinds, B. Wren, 2006, Journal of bacteriology.

Whole-genome sequencing illuminates the evolution and spread of multidrug-resistant tuberculosis in Southwest Nigeria

Gemma L. Kay, M. Pallen, A. Witney, 2017, PloS one.

Extensive Horizontal Gene Transfer during Staphylococcus aureus Co-colonization In Vivo

A. Witney, K. Gould, J. Lindsay, 2014, Genome biology and evolution.

Speed and accuracy of whole-genome nanopore sequencing for differential Neisseria gonorrhoeae strain detection in samples collected prospectively from a sexual health clinic

A. Witney, M. Furegato, S. Sadiq, 2022, medRxiv.

Comparative Phylogenomics of Clostridium difficile Reveals Clade Specificity and Microevolution of Hypervirulent Strains

A. Witney, D. Gerding, J. Hinds, 2006, Journal of bacteriology.

SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway

William T. Harvey, Scott M Elliott, Robert M. Davies, 2022, Nature Microbiology.

γδ T Cells Are a Component of Early Immunity against Preerythrocytic Malaria Parasites

J. Sacci, A. Witney, A. Azad, 2000, Infection and Immunity.

Identification of small RNAs associated with RNA chaperone Hfq reveals a new stress response regulator in Actinobacillus pleuropneumoniae

A. Witney, P. Langford, A. J. Callaghan, 2022, Frontiers in Microbiology.

Sudden Death and Left Ventricular Involvement in Arrhythmogenic Cardiomyopathy

E. Behr, M. Sheppard, S. Cook, 2019, Circulation.

Effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control for hospital-onset COVID-19 infection: Multicentre, prospective study

Asif U. Tamuri, Darren L. Smith, A. Copas, 2022, eLife.

Understanding emergence of antimycobacterial dose dependent resistance

A. Witney, N. Stoker, F. Kloprogge, 2022, bioRxiv.

Occupational Tuberculosis despite Minimal Nosocomial Contact in a Health Care Worker Undergoing Treatment with a Tumor Necrosis Factor Inhibitor.

A. Witney, I. Cropley, S. Hopkins, 2016, Annals of the American Thoracic Society.

Evaluating the effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control teams: the COG-UK hospital-onset COVID-19 infection study

Asif U. Tamuri, Darren L. Smith, A. Copas, 2022, medRxiv.

The Distribution of Mobile Genetic Elements (MGEs) in MRSA CC398 Is Associated with Both Host and Country

A. Witney, J. Hinds, K. Gould, 2011, Genome biology and evolution.

Plasmodium falciparum DNA microarrays and interpretation of data

D. Carucci, A. Witney, T. Jones, 2002 .

Metagenomic profiling of placental tissue suggests DNA virus infection of the placenta is rare

A. Witney, B. Strang, Sean Aller, 2021, The Journal of general virology.

Emergence of phenotypic and genotypic antimicrobial resistance in Mycobacterium tuberculosis

A. Witney, N. Stoker, F. Kloprogge, 2022, Scientific reports.

Posttranscriptional Regulation of Flagellin Synthesis in Helicobacter pylori by the RpoN Chaperone HP0958

A. Witney, J. Hinds, P. O’Toole, 2008, Journal of bacteriology.

Design, Validation, and Application of a Seven-Strain Staphylococcus aureus PCR Product Microarray for Comparative Genomics

A. Witney, J. Hinds, P. Butcher, 2005, Applied and Environmental Microbiology.

Comparative phylogenomics of the food-borne pathogen Campylobacter jejuni reveals genetic markers predictive of infection source.

Jason Hinds, A. Witney, J. Hinds, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Genome-level analyses of Mycobacterium bovis lineages reveal the role of SNPs and antisense transcription in differential gene expression

M. Quail, A. Witney, S. Bentley, 2013, BMC Genomics.

High-throughput generation of P. falciparum functional molecules by recombinational cloning.

D. Carucci, S. Hoffman, J. Sacci, 2004, Genome research.

Novel Antigen Identification Method for Discovery of Protective Malaria Antigens by Rapid Testing of DNA Vaccines Encoding Exons from the Parasite Genome

J. Carlton, D. Carucci, Joshua A Russell, 2004, Infection and Immunity.

Gut microbiota development during infancy: Impact of introducing allergenic foods.

D. Strachan, H. Kong, C. Flohr, 2021, The Journal of allergy and clinical immunology.

Gastrointestinal, vaginal, nasopharyngeal, and breast milk microbiota profiles and breast milk metabolomic changes in Gambian infants over the first two months of lactation: A prospective cohort study

A. Witney, I. García-Pérez, A. Shaw, 2022, Medicine.

Identification of pathogen-specific genes through microarray analysis of pathogenic and commensal Neisseria species.

A. Witney, S. Bentley, J. Hinds, 2005, Microbiology.

Identification of Plasmodium falciparum antigens by antigenic analysis of genomic and proteomic data

John Sidney, Alessandro Sette, Scott Southwood, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Antibiotic Susceptibility, Virulome, and Clinical Outcomes in European Infants with Bloodstream Infections Caused by Enterobacterales

A. Witney, G. Zuccotti, M. Sharland, 2021, Antibiotics.

SARS-CoV-2 lineage B.1.1.7 is associated with greater disease severity among hospitalised women but not men: multicentre cohort study

N. Freemantle, A. Copas, J. A. Guerra-Assunção, 2021, BMJ Open Respiratory Research.

Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning

William T. Harvey, Scott M Elliott, Kevin R. Cole, 2022, Scientific Reports.

Genomic reconstruction of the SARS-CoV-2 epidemic in England

William T. Harvey, William L. Hamilton, Richard J. Goater, 2021, Nature.

The Alpha variant was not associated with excess nosocomial SARS-CoV-2 infection in a multi-centre UK hospital study

N. Freemantle, A. Copas, J. A. Guerra-Assunção, 2021, Journal of Infection.

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package

Simon H. Tausch, Damion M. Dooley, Anders Gonçalves da Silva, 2022, GigaScience.

Staphylococcus aureus Temperate Bacteriophage: Carriage and Horizontal Gene Transfer is Lineage Associated

A. Witney, J. Lindsay, A. McCarthy, 2012, Front. Cell. Inf. Microbio..

High Prevalence of Antibiotic-Resistant Mycoplasma genitalium in Nongonococcal Urethritis: The Need for Routine Testing and the Inadequacy of Current Treatment Options

A. Witney, P. Butcher, R. Lopeman, 2013, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

A computational strategy for the search of regulatory small RNAs in Actinobacillus pleuropneumoniae

A. Witney, P. Langford, K. Gould, 2016, RNA.

Identification of Streptococcus suis Meningitis through Population-Based Surveillance, Togo, 2010–2014

A. Witney, J. Hinds, B. Gessner, 2016, Emerging infectious diseases.

Use of whole-genome sequencing to distinguish relapse from reinfection in a completed tuberculosis clinical trial

A. Witney, P. Butcher, N. Stoker, 2017, BMC Medicine.

Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes

William T. Harvey, Scott M Elliott, Kevin R. Cole, 2023, Journal of Hospital Infection.

Genomic variations define divergence of water/wildlife-associated Campylobacter jejuni niche specialists from common clonal complexes

N. Hall, A. Witney, N. French, 2011, Environmental microbiology.

Publisher Correction: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway

William T. Harvey, Scott M Elliott, Robert M. Davies, 2022, Nature Microbiology.

Strain-Dependent Restriction of Human Cytomegalovirus by Zinc Finger Antiviral Proteins

A. Witney, M. Weekes, R. Stanton, 2023, Journal of virology.

A proteomic view of the malaria parasite life cycle

J. Yates, M. Gardner, D. Carucci, 2002 .

XDR-TB transmission in London: Case management and contact tracing investigation assisted by early whole genome sequencing.

A. Witney, J. Hinds, P. Butcher, 2016, The Journal of infection.

Rare Variation in Drug Metabolism and Long QT Genes and the Genetic Susceptibility to Acquired Long QT Syndrome

S. Priori, E. Behr, D. Roden, 2022, Circulation. Genomic and precision medicine.

SARS-CoV-2 lineage B.1.1.7 is associated with greater disease severity among hospitalised women but not men

S. Robson, N. Freemantle, A. Copas, 2021, medRxiv.

Protein kinase B controls Mycobacterium tuberculosis growth via phosphorylation of the transcriptional regulator Lsr2 at threonine 112

A. Witney, S. Waddell, P. Barthe, 2019, Molecular microbiology.

Protein kinase B controls Mycobacterium tuberculosis growth via phosphorylation of the global transcriptional regulator Lsr2

A. Witney, S. Waddell, P. Barthe, 2019, bioRxiv.

Clinical Application of Whole-Genome Sequencing To Inform Treatment for Multidrug-Resistant Tuberculosis Cases

Jason Hinds, Philip D. Butcher, Neil G. Stoker, 2015, Journal of Clinical Microbiology.

Title: The role of whole genome sequencing in characterizing the mechanism of action 1 of para-aminosalicylic acid and its resistance

A. Witney, Timothy D McHugh, G. Satta, 2020 .

Clinical use of whole genome sequencing for Mycobacterium tuberculosis

Jason Hinds, A. Witney, J. Hinds, 2016, BMC Medicine.

Markers of epidemiological success of methicillin-resistant Staphylococcus aureus (MRSA) isolates in European populations.

A. Witney, S. D. de Vlas, F. Vandenesch, 2023, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

High-Resolution Analysis by Whole-Genome Sequencing of an International Lineage (Sequence Type 111) of Pseudomonas aeruginosa Associated with Metallo-Carbapenemases in the United Kingdom

A. Witney, N. Woodford, J. Turton, 2015, Journal of Clinical Microbiology.

Construction of a Yersinia pestis microarray.

A. Witney, M. Prentice, J. Hinds, 2003, Advances in Experimental Medicine and Biology.

Transcriptional Analysis of Temporal Gene Expression in Germinating Clostridium difficile 630 Endospores

N. Fairweather, A. Witney, B. Wren, 2013, PloS one.

A comparison of phenotypic and WGS drug susceptibility testing in Mycobacterium tuberculosis isolates from the Republic of Korea

A. Witney, Timothy D McHugh, G. Satta, 2023, JAC-antimicrobial resistance.

Immunogenicity and Protective Efficacy of a Plasmodium yoelii Hsp 60 DNA Vaccine in BALB / c Mice

S. Hoffman, D. Carucci, J. Sacci, 2001 .

Ancient and recent differences in the intrinsic susceptibility of Mycobacterium tuberculosis complex to pretomanid

A. Witney, S. Niemann, Juliano Timm, 2022, The Journal of antimicrobial chemotherapy.

Immunogenicity and Protective Efficacy of aPlasmodium yoelii Hsp60 DNA Vaccine in BALB/c Mice

S. Hoffman, D. Carucci, J. Sacci, 2001, Infection and Immunity.

Genetic variation in Mycobacterium tuberculosis isolates from a London outbreak associated with isoniazid resistance

A. Witney, Timothy D McHugh, M. Lipman, 2016, BMC Medicine.

Genome sequencing and characterization of an XDR ST 111 serotype O 12 hospital outbreak strain of Pseudomonas aeruginosa

A. Fraise, A. Witney, J. Hinds, 2014 .

Within-host diversity of MRSA antimicrobial resistances

Gwenan M. Knight, Adam A. Witney, A. Witney, 2015, The Journal of antimicrobial chemotherapy.

Genome sequencing and characterization of an extensively drug-resistant sequence type 111 serotype O12 hospital outbreak strain of Pseudomonas aeruginosa.

A. Fraise, A. Witney, J. Hinds, 2014, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Mapping the phylogeny and lineage history of geographically distinct BCG vaccine strains

A. Witney, H. Donoghue, Timothy D McHugh, 2023, Microbial genomics.

Adjunctive viral cell culture supports treatment decision‐making in patients with secondary humoral immunodeficiency and persistent SARS‐CoV‐2 infection

A. Witney, P. Kelleher, I. Monahan, 2021, British journal of haematology.

Mycobacterium tuberculosis Is Resistant to Isoniazid at a Slow Growth Rate by Single Nucleotide Polymorphisms in katG Codon Ser315

Kim A. Hatch, A. Witney, C. Arnold, 2015, PloS one.

Vaginal microbiota in ethnically diverse young women who did or did not develop pelvic inflammatory disease: community-based prospective study

A. Witney, P. Oakeshott, M. Furegato, 2022, Sexually Transmitted Infections.

Investigation of the function of PknB using omics tools

A. Witney, P. Barthe, C. Roumestand, 2019 .

BμG@Sbase—a microbial gene expression and comparative genomic database

Jason Hinds, Philip D. Butcher, Neil G. Stoker, 2011, Nucleic Acids Res..