J. Daily

发表

Distinct physiological states of Plasmodium falciparum in malaria-infected patients

A. Regev, J. Mesirov, E. Lander, 2007, Nature.

Characterization of the SARS-CoV-2 S Protein: Biophysical, Biochemical, Structural, and Antigenic Analysis

L. Pirofski, S. Almo, J. Daily, 2020, ACS omega.

Characterization of the SARS-CoV-2 S Protein: Biophysical, Biochemical, Structural, and Antigenic Analysis

L. Pirofski, S. Almo, J. Daily, 2020, bioRxiv.

A genome-wide map of diversity in Plasmodium falciparum

Pardis C Sabeti, E. Mauceli, B. Birren, 2007, Nature Genetics.

Oral, ultra–long-lasting drug delivery: Application toward malaria elimination goals

Hannah C. Slater, R. Langer, J. Daily, 2016, Science Translational Medicine.

A Systematic Map of Genetic Variation in Plasmodium falciparum

Yingyao Zhou, Johanna Daily, Karine G. Le Roch, 2006 .

Human microbiome signatures of differential colorectal cancer drug metabolism

Johanna Daily, J. Daily, L. Kelly, 2017, npj Biofilms and Microbiomes.

Mutations in Plasmodium falciparum dihydrofolate reductase and dihydropteroate synthase genes in Senegal

O. Gaye, J. Daily, S. Mboup, 2005, Tropical medicine & international health : TM & IH.

Short‐Term Exposure to Low‐Dose Ritonavir Impairs Clearance and Enhances Adverse Effects of Trazodone

D. Greenblatt, J. Harmatz, R. Shader, 2003, Journal of clinical pharmacology.

Cytokine-dependent and–independent gene expression changes and cell cycle block revealed in Trypanosoma cruzi-infected host cells by comparative mRNA profiling

J. Daily, J. Costales, B. Burleigh, 2009, BMC Genomics.

Genomic surveillance of SARS-CoV-2 during the first year of the pandemic in the Bronx enabled clinical and epidemiological inference

A. Bergman, J. Daily, L. Kelly, 2021, medRxiv.

Title: Genomic surveillance of SARS-CoV-2 in the Bronx enables clinical and epidemiological inference

A. Bergman, Ryan E. Forster, Amy, 2021 .

Alprazolam‐ritonavir interaction: Implications for product labeling

D. Greenblatt, J. Harmatz, R. Shader, 2000, Clinical pharmacology and therapeutics.

Case records of the Massachusetts General Hospital. Weekly clinicopathological exercises. Case 5-2000. A 35-year-old man with a painful abdominal mass and fever.

Stacey M. Ellender, N. Harris, J. Daily, 2000, The New England journal of medicine.

Plasmodium falciparum gene expression measured directly from tissue during human infection

J. Mesirov, J. Daily, D. Wirth, 2014, Genome Medicine.

A Molecular Epidemiological Study of var Gene Diversity to Characterize the Reservoir of Plasmodium falciparum in Humans in Africa

Kevin Marsh, Karen P. Day, Johanna P. Daily, 2011, PloS one.

A non-radioactive DAPI-based high-throughput in vitro assay to assess Plasmodium falciparum responsiveness to antimalarials--increased sensitivity of P. falciparum to chloroquine in Senegal.

J. Daily, O. Ndir, D. Ndiaye, 2010, The American journal of tropical medicine and hygiene.

A Capsular Polysaccharide-Specific Antibody Alters Streptococcus pneumoniae Gene Expression during Nasopharyngeal Colonization of Mice

L. Pirofski, J. Daily, Tao Wang, 2018, Infection and Immunity.

A high parasite density environment induces transcriptional changes and cell death in Plasmodium falciparum blood stages

Thomas S. Rask, Sabia Z. Abidi, J. Daily, 2018, The FEBS journal.

Malaria Journal in Vivo Transcriptional Profiling of P. Falciparum in Vivo Transcriptional Profiling of Plasmodium Falciparum

Yingyao Zhou, E. Winzeler, K. L. Le Roch, 2004 .

Challenges and Strategies for Biomedical Researchers Returning to Low- and Middle-Income Countries after Training.

J. Daily, A. Lescano, L. Golightly, 2020, The American journal of tropical medicine and hygiene.

Induction of P-glycoprotein expression by HIV protease inhibitors in cell culture.

D. Greenblatt, J. Daily, L. V. von Moltke, 2000, AIDS.

Transcriptional Profiling of Plasmodium falciparum Parasites from Patients with Severe Malaria Identifies Distinct Low vs. High Parasitemic Clusters

A. Regev, J. Mesirov, N. Pochet, 2012, PloS one.

Deletion analysis of the 5' flanking sequence of the Plasmodium gallinaceum sexual stage specific gene pgs28 suggests a bipartite arrangement of cis-control elements.

J. Daily, D. Wirth, W. Mbacham, 2001, Molecular and biochemical parasitology.

Human Immunodeﬁciency Virus-Speciﬁc Circulating CD8 T Lymphocytes Have Down-Modulated CD3 z and CD28, Key Signaling Molecules for T-Cell Activation

J. Lieberman, J. Daily, P. Shankar, 2000 .

Mutations in PFCRT K76T do not correlate with sulfadoxine–pyrimethamine–amodiaquine failure in Pikine, Senegal

J. Daily, O. Sarr, O. Ndir, 2008, Parasitology Research.

Case records of the Massachusetts General Hospital. Weekly clinicopathological exercises. Case 22-2003. A 22-year-old man with chills and fever after a stay in South America.

J. Daily, M. A. Waldron, 2003, The New England journal of medicine.

Limited variation of the 5'cis-control region of the transmission blocking vaccine candidate Pfs25 amid great genetic diversity of Plasmodium falciparum in Cameroon

J. Daily, D. Wirth, K. Laserson, 2008 .

Shared features in the pathobiology of babesiosis and malaria.

J. Daily, A. Spielman, P. Krause, 2007, Trends in parasitology.

Genomic surveillance of SARS-CoV-2 during the first year of the pandemic in the Bronx enabled clinical and epidemiological inference

A. Bergman, J. Daily, L. Kelly, 2022, Cold Spring Harbor molecular case studies.

HIV Malaria Co-Infection Is Associated with Atypical Memory B Cell Expansion and a Reduced Antibody Response to a Broad Array of Plasmodium falciparum Antigens in Rwandan Adults

Peter D. Crompton, Ryung S. Kim, K. Anastos, 2015, PloS one.

Hepatobiliary Disease

J. Daily, J. Maguire, 2006, Tropical Infectious Diseases.

Malaria 2017: Update on the Clinical Literature and Management

J. Daily, 2017, Current Infectious Disease Reports.

Human monoclonal antibodies against chikungunya virus target multiple distinct epitopes in the E1 and E2 glycoproteins

Larissa B. Thackray, Rebecca S. Brown, J. Dye, 2019, PLoS pathogens.

Near-germline human monoclonal antibodies neutralize and protect against multiple arthritogenic alphaviruses

M. Diamond, J. Daily, K. Chandran, 2021, Proceedings of the National Academy of Sciences.

Tuberculous osteomyelitis presenting as shoulder pain.

J. Daily, D. Solomon, P. Monach, 2003, The Journal of rheumatology.

A Replication-Competent Vesicular Stomatitis Virus for Studies of SARS-CoV-2 Spike-Mediated Cell Entry and Its Inhibition

L. Pirofski, J. Dye, J. Daily, 2020, Cell Host & Microbe.

A replication-competent vesicular stomatitis virus for studies of SARS-CoV-2 spike-mediated cell entry and its inhibition

L. Pirofski, J. Dye, J. Daily, 2020, bioRxiv.

The use of coomassie brilliant blue for critical micelle concentration determination of detergents

J. Daily, D. Berns, R. Almog, 1986 .

Longitudinally monitored immune biomarkers predict the timing of COVID-19 outcomes

S. Almo, J. Daily, L. Kelly, 2022, PLoS Comput. Biol..

Single-Dilution COVID-19 Antibody Test with Qualitative and Quantitative Readouts

L. Pirofski, S. Almo, J. Daily, 2021, mSphere.

Treatment of severe COVID-19 with convalescent plasma in Bronx, NYC

L. Pirofski, S. Almo, J. Daily, 2021, JCI insight.

Treatment of Severe COVID-19 with Convalescent Plasma in the Bronx, NYC

L. Pirofski, S. Almo, J. Daily, 2020, medRxiv.

Development, clinical translation, and utility of a COVID-19 antibody test with qualitative and quantitative readouts

L. Pirofski, S. Almo, J. Daily, 2020, medRxiv.

Orbital apex syndrome and cavernous sinus thrombosis due to infection with Staphylococcus aureus and Pseudomonas aeruginosa.

J. Daily, A. Colson, 1999, Clinical Infectious Diseases.

Human microbiome signatures of differential colorectal cancer drug metabolism

J. Daily, L. Kelly, Leah Guthrie, 2017, npj Biofilms and Microbiomes.

Higher Rates of Misdiagnosis in Pediatric Patients Versus Adults Hospitalized With Imported Malaria

J. Daily, P. Arguin, A. Goldman-Yassen, 2016, Pediatric emergency care.

Diagnosis, Treatment, and Prevention of Malaria in the US: A Review.

J. Daily, Aurelia Minuti, Nazia Khan, 2022, JAMA.

QT prolongation in a diverse, urban population of COVID-19 patients treated with hydroxychloroquine, chloroquine, or azithromycin

J. Daily, L. Di Biase, J. Fisher, 2020, Journal of Interventional Cardiac Electrophysiology.

In vivo transcriptome of Plasmodium falciparum reveals overexpression of transcripts that encode surface proteins.

Yingyao Zhou, Yingyao Zhou, E. Winzeler, 2005, The Journal of infectious diseases.

IGIV: a potential role for hepatitis B prophylaxis in the bone marrow peritransplant period

J. Daily, R. Soiffer, J. Fingeroth, 1998, Bone Marrow Transplantation.

Inhibition of Human Cytochrome P450 Isoforms by Nonnucleoside Reverse Transcriptase Inhibitors

D. Greenblatt, J. Harmatz, R. Shader, 2001, Journal of clinical pharmacology.

Antimalarial Drug Therapy: The Role of Parasite Biology and Drug Resistance

J. Daily, 2006, Journal of clinical pharmacology.

Protease Inhibitors as Inhibitors of Human Cytochromes P450: High Risk Associated with Ritonavir

D. Greenblatt, J. Harmatz, R. Shader, 1998, Journal of clinical pharmacology.

Differential Impairment of Triazolam and Zolpidem Clearance by Ritonavir

D. Greenblatt, J. Harmatz, R. Shader, 2000, Journal of acquired immune deficiency syndromes.

Defining the origin of Plasmodium falciparum resistant dhfr isolates in Senegal.

O. Gaye, J. Daily, O. Sarr, 2006, Acta tropica.

Prevalence of Plasmodium falciparum pfcrt polymorphisms and in vitro chloroquine sensitivity in Senegal

J. Daily, S. Mboup, O. Ndir, 2003, Parasitology.

Duplication, gene conversion, and genetic diversity in the species-specific acyl-CoA synthetase gene family of Plasmodium falciparum.

Elena R. Lozovsky, D. Hartl, J. Daily, 2006, Molecular and biochemical parasitology.

Genetic resistance to purine nucleoside phosphorylase inhibition in Plasmodium falciparum

V. Schramm, A. Fiser, J. Daily, 2018, Proceedings of the National Academy of Sciences.

Activated Neutrophils Are Associated with Pediatric Cerebral Malaria Vasculopathy in Malawian Children

Ryung S. Kim, J. Daily, T. Taylor, 2016, mBio.

Inferring Developmental Stage Composition from Gene Expression in Human Malaria

Curtis Huttenhower, Evan Meyer, Roger Wiegand, 2013, PLoS Comput. Biol..

Plasmodium falciparum Infection Does Not Affect Human Immunodeficiency Virus Viral Load in Coinfected Rwandan Adults

K. Anastos, M. Heo, J. Daily, 2014, Open forum infectious diseases.

Human Immunodeficiency Virus-Specific Circulating CD8 T Lymphocytes Have Down-Modulated CD3ζ and CD28, Key Signaling Molecules for T-Cell Activation

J. Lieberman, J. Daily, P. Shankar, 2000, Journal of Virology.

Trypanosoma cruzi Triggers an Early Type I IFN Response In Vivo at the Site of Intradermal Infection1

J. Daily, A. Bei, B. Burleigh, 2009, The Journal of Immunology.

A Case Report and Literature Review of Babesiosis-Induced Acute Respiratory Distress Syndrome

J. Daily, P. Dicpinigaitis, Philip S. Yune, 2022, Case reports in infectious diseases.

Tafenoquine: the new kid on the block.

J. Daily, V. Chen, 2019, Current opinion in infectious diseases.

Metabolomics and malaria biology.

J. Daily, K. Rhee, Kyu Y Rhee, 2011, Molecular and biochemical parasitology.

Dimethyl fumarate reduces TNF and Plasmodium falciparum induced brain endothelium activation in vitro

J. Daily, T. Taylor, K. Seydel, 2020, Malaria journal.

Blockade of LAG-3 in PD-L1-Deficient Mice Enhances Clearance of Blood Stage Malaria Independent of Humoral Responses

J. Daily, G. Lauvau, Emily Spaulding, 2020, bioRxiv.

Lipid metabolites of the phospholipase A2 pathway and inflammatory cytokines are associated with brain volume in paediatric cerebral malaria

Ryung S. Kim, J. Daily, J. Berman, 2015, Malaria Journal.

Cytolytic memory CD4+ T cell clonotypes are expanded during Plasmodium falciparum infection

Ryung S. Kim, J. Daily, Jinghang Zhang, 2021, bioRxiv.

In vivo transcriptional profiling of Plasmodium falciparum

Yingyao Zhou, Xuemin Fang, Yingyao Zhou, 2004 .

Type I Interferon Receptor Variants in Gene Regulatory Regions are Associated with Susceptibility to Cerebral Malaria in Malawi.

J. Daily, T. Taylor, Y. Suh, 2018, The American journal of tropical medicine and hygiene.

STING-Licensed Macrophages Prime Type I IFN Production by Plasmacytoid Dendritic Cells in the Bone Marrow during Severe Plasmodium yoelii Malaria

Jamie M Moore, J. Daily, G. Lauvau, 2016, PLoS pathogens.

Efficacy and Safety of COVID-19 Convalescent Plasma in Hospitalized Patients

Henry E. Wang, L. Pirofski, R. Sacco, 2021, JAMA internal medicine.

Mild Plasmodium falciparum Malaria following an Episode of Severe Malaria Is Associated with Induction of the Interferon Pathway in Malawian Children

Ryung S. Kim, Chang-Yun Lin, J. Daily, 2012, Infection and Immunity.

Inhibition of desipramine hydroxylation (Cytochrome P450-2D6) in vitro by quinidine and by viral protease inhibitors: relation to drug interactions in vivo.

D. Greenblatt, J. Harmatz, R. Shader, 1998, Journal of pharmaceutical sciences.

3' UTR elements enhance expression of Pgs28, an ookinete protein of Plasmodium gallinaceum.

J. Daily, D. Wirth, W. Mbacham, 2000, Molecular and biochemical parasitology.

In vivo and in vitro analysis of chloroquine resistance in Plasmodium falciparum isolates from Senegal

J. Daily, O. Sarr, O. Ndir, 2005, Parasitology Research.

The T-Cell Inhibitory Molecule Butyrophilin-Like 2 Is Up-regulated in Mild Plasmodium falciparum Infection and Is Protective During Experimental Cerebral Malaria.

Ryung S. Kim, K. Anastos, J. Daily, 2015, The Journal of infectious diseases.

Chaperone expression profiles correlate with distinct physiological states of Plasmodium falciparum in malaria patients

J. Daily, U. Tatu, Rani Pallavi, 2010, Malaria Journal.

Plasmodium falciparum biology: analysis of in vitro versus in vivo growth conditions.

J. Daily, Michele Leroux, V. Lakshmanan, 2009, Trends in parasitology.

Title : A High Parasite Density Environment Induces Transcriptional Changes and Cell Death in Plasmodium falciparum Blood Stages Running title : High Density Induces P . falciparum Cell Death

Thomas S. Rask, Sabia Z. Abidi, J. Daily, 2017 .

A Combination of Receptor-Binding Domain and N-Terminal Domain Neutralizing Antibodies Limits the Generation of SARS-CoV-2 Spike Neutralization-Escape Mutants

J. Dye, J. Daily, A. Herbert, 2021, mBio.

Lipid metabolites of the phospholipase A2 pathway and inflammatory cytokines are associated with brain volume in paediatric cerebral malaria

Ryung S. Kim, J. Daily, J. Berman, 2015, Malaria Journal.

Extensive alterations of blood metabolites in pediatric cerebral malaria

Ryung S. Kim, J. Daily, G. Birbeck, 2017, PloS one.

Metabolomic analysis of patient plasma yields evidence of plant-like α-linolenic acid metabolism in Plasmodium falciparum.

A. Fiser, J. Daily, O. Ndir, 2012, The Journal of infectious diseases.

K13-Propeller Mutations and Malaria Resistance.

J. Daily, 2016, The New England journal of medicine.

Characterizing the Effects of Radiation Dermatitis on Quality of Life: A Prospective Survey-Based Study.

K. Mehta, S. Kalnicki, J. Daily, 2019, Journal of the American Academy of Dermatology.

Characterization of the SARS-CoV-2 S Protein: Biophysical, Biochemical, Structural, and Antigenic Analysis

L. Pirofski, S. Almo, J. Daily, 2020, bioRxiv.

228Building Bridges: Improving Antibiotic Prescribing in the Emergency Department

L. Pirofski, J. Daily, M. Desruisseaux, 2014 .

A malaria fingerprint in the human genome?

Pardis C Sabeti, J. Daily, 2008, The New England journal of medicine.

Trends in HIV Incidence in Young People

J. Daily, 1998 .

Reduced paediatric hospitalizations for malaria and febrile illness patterns following implementation of a community-based malaria control programme in rural Rwanda.

C. Karema, J. Daily, M. Franke, 2008, World hospitals and health services : the official journal of the International Hospital Federation.

Extensive impairment of triazolam and alprazolam clearance by short-term low-dose ritonavir: the clinical dilemma of concurrent inhibition and induction.

D. Greenblatt, J. Harmatz, R. Shader, 1999, Journal of clinical psychopharmacology.

Iron deficiency during pregnancy: blessing or curse?

J. Daily, B. Wylie, 2008, The Journal of infectious diseases.

Clinical problem-solving. Footprints.

J. Daily, S. Kassutto, 2004, The New England journal of medicine.

Shedding Light on the Role of the Skin in Vaccine-Induced Protection against the Malaria Sporozoite

J. Daily, 2018, mBio.

Bacterial Decolonization for Prevention of Radiation Dermatitis: A Randomized Clinical Trial.

H. Hosgood, J. Daily, N. Ohri, 2023, JAMA oncology.

A combination of RBD and NTD neutralizing antibodies limits the generation of SARS-CoV-2 spike neutralization-escape mutants

J. Dye, J. Daily, A. Herbert, 2021, bioRxiv.

Malaria vaccine trials--beyond efficacy end points.

J. Daily, 2012, The New England journal of medicine.

A tribute to Paul S. Frenette (1965-2021).

J. Daily, G. Tomaselli, A. Skoultchi, 2021, Journal of Clinical Investigation.

An HIV Risk Reduction Trial

J. Daily, 1998 .

Health care workers in Africa access a broad range of topics using evidence-based online medical information

J. Daily, A. Wurcel, M. McNairy, 2012, Global public health.

Update on pathogenesis, management, and control of Plasmodium vivax

J. Daily, Nazia Khan, 2022, Current opinion in infectious diseases.

Association of Staphylococcus aureus Colonization With Severity of Acute Radiation Dermatitis in Patients With Breast or Head and Neck Cancer.

H. Hosgood, J. Daily, N. Ohri, 2023, JAMA oncology.

Higher Rates of Misdiagnosis in Pediatric Patients Versus Adults Hospitalized With Imported Malaria

J. Daily, P. Arguin, Vidya K Mony, 2016, Pediatric emergency care.