Michael D. Lee

发表

GToTree: a user-friendly workflow for phylogenomics

Michael D. Lee, Michael D. Lee, 2019 .

Transient exposure to novel high temperatures reshapes coastal phytoplankton communities

Michael D. Lee, Joshua D. Kling, Fei-xue Fu, 2019, The ISME Journal.

Long-Term m5C Methylome Dynamics Parallel Phenotypic Adaptation in the Cyanobacterium Trichodesmium

Michael D. Lee, Fei-xue Fu, D. Hutchins, 2020, Molecular biology and evolution.

Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission

Huw A. Ogilvie, R. A. Leo Elworth, C. Mason, 2020, bioRxiv.

Energy and carbon metabolisms in a deep terrestrial subsurface fluid microbial community

Michael D. Lee, J. Amend, S. Jungbluth, 2017, The ISME Journal.

Assessing Marine Microbial Induced Corrosion at Santa Catalina Island, California

Ryan A. Lesniewski, C. G. Wheat, Michael D. Lee, 2016, Front. Microbiol..

Biogeographic conservation of the cytosine epigenome in the globally important marine, nitrogen‐fixing cyanobacterium Trichodesmium

Michael D. Lee, Fei-xue Fu, D. Hutchins, 2017, Environmental microbiology.

Negative plant-microbiome feedback limits productivity in aquaponics

N. Baliga, Michael D. Lee, S. Gibbons, 2019, bioRxiv.

Jellyfish Life Stages Shape Associated Microbial Communities, While a Core Microbiome Is Maintained Across All

Michael D. Lee, Joshua D. Kling, R. Araya, 2018, Front. Microbiol..

SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission

T. Treangen, F. Sedlazeck, I. Maljkovic Berry, 2021 .

SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission

Huw A. Ogilvie, C. Mason, T. Treangen, 2021, Genome research.

Comment on “The complex effects of ocean acidification on the prominent N2-fixing cyanobacterium Trichodesmium”

Michael D. Lee, Fei-xue Fu, D. Hutchins, 2017, Science.

Brief Report Two co-dominant nitrogen- ﬁ xing cyanobacteria demonstrate distinct acclimation and adaptation responses to cope with ocean warming

Michael D. Lee, Joshua D. Kling, Fei-xue Fu, 2022 .

Reference-guided metagenomics reveals genome-level evidence of potential microbial transmission from the ISS environment to an astronaut's microbiome

Michael D. Lee, H. Lorenzi, C. Dupont, 2020, iScience.

Community-led, integrated, reproducible multi-omics with anvi’o

Daniel J. Blankenberg, Ryan M. Moore, Elaina D. Graham, 2020, Nature Microbiology.

The Abundance and Diversity of Fungi in a Hypersaline Microbial Mat from Guerrero Negro, Baja California, México

Michael D. Lee, B. Bebout, P. Maza-Márquez, 2021, Journal of fungi.

Lettuce (Lactuca sativa) productivity influenced by microbial inocula under nitrogen-limited conditions in aquaponics

N. Baliga, Michael D. Lee, S. Gibbons, 2021, PloS one.

Molecular and physiological evidence of genetic assimilation to high CO2 in the marine nitrogen fixer Trichodesmium

Michael D. Lee, Fei-xue Fu, D. Hutchins, 2016, Proceedings of the National Academy of Sciences.

Genomic and phenotypic characterization of Burkholderia isolates from the potable water system of the International Space Station

W. Nierman, Michael D. Lee, C. Dupont, 2019, bioRxiv.

Genomic mosaicism underlies the adaptation of marine Synechococcus ecotypes to distinct oceanic iron niches.

Michael D. Lee, B. S. Belisle, N. Ahlgren, 2019, Environmental microbiology.

The Trichodesmium consortium: conserved heterotrophic co-occurrence and genomic signatures of potential interactions

Michael D. Lee, Fei-xue Fu, D. Hutchins, 2017, The ISME Journal.

NASA GeneLab RNA-seq consensus pipeline: standardized processing of short-read RNA-seq data

Daniel C. Berrios, Michael D. Lee, Afshin Beheshti, 2020, bioRxiv.

Importance of mobile genetic element immunity in numerically abundant Trichodesmium clades

Noelle A. Held, Michael D. Lee, Fei-xue Fu, 2022, bioRxiv.

Functional Genomics and Phylogenetic Evidence Suggest Genus-Wide Cobalamin Production by the Globally Distributed Marine Nitrogen Fixer Trichodesmium

Michael D. Lee, Fei-xue Fu, Pingping Qu, 2018, Front. Microbiol..

GToTree: a user-friendly workflow for phylogenomics

Michael D Lee, Michael D. Lee, 2019, bioRxiv.

Microbial isolation and characterization from two flex lines from the urine processor assembly onboard the international space station

Michael D. Lee, Sarah Stahl-Rommel, Miten Jain, 2023, Biofilm.

Dual thermal ecotypes detected within a nearly genetically-identical population of the unicellular marine cyanobacterium Synechococcus

Michael D. Lee, Joshua D. Kling, Fei-xue Fu, 2020, bioRxiv.

Draft Genome Sequence of Cyclobacterium marinum Strain Atlantic-IS, Isolated from the Atlantic Slope off the Coast of Virginia, USA

Michael D. Lee, I. Sharma, 2019, Microbiology Resource Announcements.

Metabolomics As an Emerging Tool in the Search for Astrobiologically Relevant Biomarkers.

Michael D Lee, Lauren Seyler, Elizabeth B Kujawinski, 2020, Astrobiology.

Transcriptional Activities of the Microbial Consortium Living with the Marine Nitrogen-Fixing Cyanobacterium Trichodesmium Reveal Potential Roles in Community-Level Nitrogen Cycling

Noelle A. Held, Michael D. Lee, Fei-xue Fu, 2017, Applied and Environmental Microbiology.

Marine Synechococcus isolates representing globally abundant genomic lineages demonstrate a unique evolutionary path of genome reduction without a decrease in GC content

Michael D. Lee, Joshua D. Kling, D. Hutchins, 2019, Environmental microbiology.

Following the Astrobiology Roadmap: Origins, Habitability and Future Exploration.

Michael D. Lee, Aubrie O’Rourke, P. Wilburn, 2020, Current issues in molecular biology.

Mechanisms of increased Trichodesmium fitness under iron and phosphorus co-limitation in the present and future ocean

Michael D. Lee, Fei-xue Fu, D. Hutchins, 2016, Nature Communications.

Why Environmental Biomarkers Work: Transcriptome-Proteome Correlations and Modeling of Multi-Stressor Experiments in the Marine Bacterium Trichodesmium

Michael D. Lee, Fei-xue Fu, D. Hutchins, 2021, bioRxiv.

Microbial Communities on Seafloor Basalts at Dorado Outcrop Reflect Level of Alteration and Highlight Global Lithic Clades

Michael D. Lee, B. Orcutt, J. Sylvan, 2015, Front. Microbiol..

Transient exposure to novel high temperatures reshapes coastal phytoplankton communities

Michael D. Lee, Joshua D. Kling, Fei-xue Fu, 2019, The ISME Journal.

Nutrient-Colimited Trichodesmium as a Nitrogen Source or Sink in a Future Ocean

Michael D. Lee, D. Hutchins, M. Saito, 2017, Applied and Environmental Microbiology.

Following the Astrobiology Roadmap: Origins, Habitability and Future Exploration

Michael D. Lee, Aubrie O’Rourke, P. Wilburn, 2020, Astrobiology: Current, Evolving, and Emerging Perspectives.

Genomic and phenotypic characterization of Burkholderia isolates from the potable water system of the International Space Station

W. Nierman, Michael D. Lee, C. Dupont, 2020, PloS one.

DMSP synthesis genes distinguish two types of DMSP producer phenotypes.

Michael D. Lee, N. Levine, E. Webb, 2021, Environmental microbiology.