Xiaohui Xie

发表

Hobbes: optimized gram-based methods for efficient read alignment

Nagesh V. Honnalli, Chen Li, Athena Ahmadi, 2011, Nucleic acids research.

Split Bregman method for large scale fused Lasso

Xiaohui Xie, Gui-Bo Ye, Xiaohui Xie, 2010, Comput. Stat. Data Anal..

Identifying novel constrained elements by exploiting biased substitution patterns

Xiaohui Xie, Nir Friedman, Michael C. Zody, 2009, Bioinform..

AnatomyNet: Deep 3D Squeeze-and-excitation U-Nets for fast and fully automated whole-volume anatomical segmentation

Nan Du, Xiaohui Xie, Wentao Zhu, 2018, bioRxiv.

Title A gradient boosting algorithm for survival analysis via direct optimization of concordance index Permalink

Yifei Chen, Xiaohui Xie, Zhenyu Jia, 2013 .

DeepLung : 3 D Deep Convolutional Nets for Automated Pulmonary Nodule Detection and Classification

Xiaohui Xie, Wentao Zhu, Wei Fan, 2017 .

Querying Large Similar Sequences in a Compressed Format Efficiently

Chen Li, Xiaohui Xie, Bin Wang, 2011 .

Sparse Inverse Covariance Estimation via the Split Bregman Method

Xiaohui Xie, Jian-Feng Cai, Gui-Bo Ye, 2010 .

Analysis of COVID-19 spread characteristics and infection numbers based on large-scale structured case data

Zhenyu Wang, Xiaohui Xie, Li Jiang, 2020, SCIENTIA SINICA Informationis.

Clinically applicable deep learning framework for organs at risk delineation in CT images

Xiaohui Xie, Yang Liu, Lu Zhipeng, 2019, Nature Machine Intelligence.

Diffeomorphic Image Registration with Neural Velocity Field

Xiaohui Xie, Xiangyi Yan, Kun Han, 2022, 2202.12498.

Handwritten Hangul recognition using deep convolutional neural networks

Xiaohui Xie, In-Jung Kim, 2015, International Journal on Document Analysis and Recognition (IJDAR).

Diffeomorphic Image Registration with Neural Velocity Field

Xiaohui Xie, Xiangyi Yan, Kun Han, 2022, 2023 IEEE/CVF Winter Conference on Applications of Computer Vision (WACV).

NoduleNet: Decoupled False Positive Reductionfor Pulmonary Nodule Detection and Segmentation pdf

Hao Tang, Xiaohui Xie, Chupeng Zhang, 2019, MICCAI.

Identifying gene regulatory networks in schizophrenia

Jessica A. Turner, Xiaohui Xie, Steven G. Potkin, 2010, NeuroImage.

Co-Occurrence Feature Learning for Skeleton Based Action Recognition Using Regularized Deep LSTM Networks pdf

Xiaohui Xie, Wenjun Zeng, Cuiling Lan, 2016, AAAI.

VTNFP: An Image-Based Virtual Try-On Network With Body and Clothing Feature Preservation

Xiaohui Xie, Ruiyun Yu, Xiaoqi Wang, 2019, 2019 IEEE/CVF International Conference on Computer Vision (ICCV).

A Combined Deep Learning-Gradient Boosting Machine Framework for Fluid Intelligence Prediction pdf

Xiaohui Xie, Yeeleng Scott Vang, Yingxin Cao, 2019, ABCD-NP@MICCAI.

A Gradient Boosting Algorithm for Survival Analysis via Direct Optimization of Concordance Index

Xiaohui Xie, Yifei Chen, Zhenyu Jia, 2013, Comput. Math. Methods Medicine.

DANN: a deep learning approach for annotating the pathogenicity of genetic variants

Xiaohui Xie, Yifei Chen, Daniel Quang, 2015, Bioinform..

Identifying viruses from metagenomic data using deep learning

Chao Deng, Kai Song, Yi Li, 2020, Quantitative Biology.

Gene expression inference with deep learning

Yi Li, Xiaohui Xie, Yifei Chen, 2015, bioRxiv.

MotifMap: integrative genome-wide maps of regulatory motif sites for model species

Xiaohui Xie, Pierre Baldi, Paul Rigor, 2011, BMC Bioinformatics.

MotifMap: a human genome-wide map of candidate regulatory motif sites

Xiaohui Xie, Pierre Baldi, Paul Rigor, 2009, Bioinform..

AnatomyNet: Deep learning for fast and fully automated whole‐volume segmentation of head and neck anatomy

Xiaohui Xie, Zhen Qian, Liang Zeng, 2018, Medical physics.

Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity

Yi Li, Xiaohui Xie, Xiaohui Xie, 2014, Bioinform..

Efficient direct search on compressed genomic data

Bin Wang, Xiaohui Xie, Chen Li, 2013, 2013 IEEE 29th International Conference on Data Engineering (ICDE).

A mixture model for expression deconvolution from RNA-seq in heterogeneous tissues

Yi Li, Xiaohui Xie, Xiaohui Xie, 2013, BMC Bioinformatics.

Learning sparse gradients for variable selection and dimension reduction

Xiaohui Xie, Gui-Bo Ye, Xiaohui Xie, 2010, Machine Learning.

Variable Selection and Dimension Reduction via Sparse Gradients pdf

Xiaohui Xie, Gui-Bo Ye, Xiaohui Xie, 2010, ArXiv.

Efficient variable selection in support vector machines via the alternating direction method of multipliers

Xiaohui Xie, Yifei Chen, Gui-Bo Ye, 2011, AISTATS.

Split Bregman Method for Sparse Inverse Covariance Estimation with Matrix Iteration Acceleration pdf

Xiaohui Xie, Jian-Feng Cai, Gui-Bo Ye, 2010, ArXiv.

A deep learning-based auto-segmentation system for organs-at-risk on whole-body computed tomography images for radiation therapy.

Xiaohui Xie, Z. Lu, Qianqian Liu, 2021, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Spatial Context-Aware Self-Attention Model For Multi-Organ Segmentation pdf

Xingwei Liu, Qian Huang, Yong Liu, 2020, 2021 IEEE Winter Conference on Applications of Computer Vision (WACV).

Attentionanatomy: A Unified Framework for Whole-Body Organs at Risk Segmentation Using Multiple Partially Annotated Datasets

Yang Liu, Yong Liu, Hao Tang, 2020, 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI).

AnatomyNet: Deep 3D Squeeze-and-excitation U-Nets for fast and fully automated whole-volume anatomical segmentation pdf

Xiaohui Xie, Nan Du, Hui Tang, 2018, bioRxiv.

MixClone: a mixture model for inferring tumor subclonal populations

Yi Li, Xiaohui Xie, Xiaohui Xie, 2015, BMC Genomics.

Inference in Kingman's Coalescent with Particle Markov Chain Monte Carlo Method

Xiaohui Xie, Yifei Chen, Yifei Chen, 2013, 1305.0855.

Deep Learning Framework for Multi-class Breast Cancer Histology Image Classification pdf

Xiaohui Xie, Zhen Chen, Yeeleng Scott Vang, 2018, ICIAR.

HLA class I binding prediction via convolutional neural networks

Xiaohui Xie, Yeeleng Scott Vang, Xiaohui Xie, 2017, bioRxiv.

Parallel clustering of single cell transcriptomic data with split‐merge sampling on Dirichlet process mixtures

Xiaohui Xie, José P. Pinto, Tiehang Duan, 2018, Bioinform..

Parallelized Inference for Single Cell Transcriptomic Clustering with Split Merge Sampling on DPMM Model

Xiaohui Xie, José P. Pinto, Tiehang Duan, 2018, bioRxiv.

Sequence analysis Human genomes as email attachments

Xiaohui Xie, Chen Li, Scott Christley, 2022 .

Automated pulmonary nodule detection using 3D deep convolutional neural networks

Hao Tang, Xiaohui Xie, Daniel R. Kim, 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).

DeepLung: Deep 3D Dual Path Nets for Automated Pulmonary Nodule Detection and Classification

Xiaohui Xie, Wei Fan, Wentao Zhu, 2018, 2018 IEEE Winter Conference on Applications of Computer Vision (WACV).

MVHM: A Large-Scale Multi-View Hand Mesh Benchmark for Accurate 3D Hand Pose Estimation pdf

Yusheng Xie, Shih-Yao Lin, Yen-Yu Lin, 2020, 2021 IEEE Winter Conference on Applications of Computer Vision (WACV).

Adversarial deep structured nets for mass segmentation from mammograms

Gregory D. Hager, Xiaohui Xie, Trac D. Tran, 2017, 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).

Deep Multi-instance Networks with Sparse Label Assignment for Whole Mammogram Classification

Xiaohui Xie, Wentao Zhu, Qi Lou, 2016, bioRxiv.

Automatic Pulmonary Lobe Segmentation Using Deep Learning

Hao Tang, Xiaohui Xie, Chupeng Zhang, 2019, 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019).

Adversarial Deep Structural Networks for Mammographic Mass Segmentation

Xiaohui Xie, Wentao Zhu, Xiaohui Xie, 2016, bioRxiv.

Neural Multi-Scale Self-Supervised Registration for Echocardiogram Dense Tracking

Xiaohui Xie, Daguang Xu, Wei Fan, 2019, bioRxiv.

SNP-based pathway enrichment analysis for genome-wide association studies

Zhaoxia Yu, Xiaohui Xie, Steven G. Potkin, 2011, BMC Bioinformatics.

DeepLung: 3D Deep Convolutional Nets for Automated Pulmonary Nodule Detection and Classification

Xiaohui Xie, Wei Fan, Wentao Zhu, 2017, bioRxiv.

Generating Realistic Training Images Based on Tonality-Alignment Generative Adversarial Networks for Hand Pose Estimation pdf

Xiaohui Xie, Hui Tang, Wei Fan, 2018, ArXiv.

DeepLung: Deep 3D Dual Path Nets for Automated Pulmonary Nodule Detection and Classification

Xiaohui Xie, Wentao Zhu, Chaochun Liu, 2018, 2018 IEEE Winter Conference on Applications of Computer Vision (WACV).

Structured Triplet Learning with POS-Tag Guided Attention for Visual Question Answering

Limin Wang, Charless C. Fowlkes, Yu Qiao, 2018, 2018 IEEE Winter Conference on Applications of Computer Vision (WACV).

DeepEM: Deep 3D ConvNets With EM For Weakly Supervised Pulmonary Nodule Detection pdf

Xiaohui Xie, Wentao Zhu, Yeeleng Scott Vang, 2018, bioRxiv.

Hobbes3: Dynamic generation of variable-length signatures for efficient approximate subsequence mappings

Xiaohui Xie, Chen Li, Jongik Kim, 2016, 2016 IEEE 32nd International Conference on Data Engineering (ICDE).

Improving read mapping using additional prefix grams

Xiaohui Xie, Chen Li, Jongik Kim, 2014, BMC Bioinformatics.

Nonparametric Structure Regularization Machine for 2D Hand Pose Estimation

Haoyu Ma, Yifei Chen, Xiaohui Xie, 2020, 2020 IEEE Winter Conference on Applications of Computer Vision (WACV).

Temporal-Aware Self-Supervised Learning for 3D Hand Pose and Mesh Estimation in Videos pdf

Yusheng Xie, Shih-Yao Lin, Yen-Yu Lin, 2020, 2021 IEEE Winter Conference on Applications of Computer Vision (WACV).

DGGAN: Depth-image Guided Generative Adversarial Networks for Disentangling RGB and Depth Images in 3D Hand Pose Estimation

Xiaohui Xie, Yusheng Xie, Wei Fan, 2020, 2020 IEEE Winter Conference on Applications of Computer Vision (WACV).

Rotation-invariant Mixed Graphical Model Network for 2D Hand Pose Estimation

Haoyu Ma, Yifei Chen, Xiaohui Xie, 2020, 2020 IEEE Winter Conference on Applications of Computer Vision (WACV).

TAGAN: Tonality Aligned Generative Adversarial Networks for Realistic Hand Pose Synthesis

Yusheng Xie, Hui Tang, Wei Fan, 2019, BMVC.

Adaptive Graphical Model Network for 2D Handpose Estimation

Haoyu Ma, Yifei Chen, Deying Kong, 2019, BMVC.

An End-to-End Framework for Integrated Pulmonary Nodule Detection and False Positive Reduction

Xingwei Liu, Hao Tang, Xiaohui Xie, 2019, 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019).

Network2Vec: Learning Node Representation Based on Space Mapping in Networks

Yangyang Zhao, Zhenyu Wang, Sharad Mehrotra, 2019, 2019 International Conference on Data Mining Workshops (ICDMW).

Test-Time Training for Deformable Multi-Scale Image Registration

Xiaohui Xie, Daguang Xu, Yufang Huang, 2021, 2021 IEEE International Conference on Robotics and Automation (ICRA).

SIA-GCN: A Spatial Information Aware Graph Neural Network with 2D Convolutions for Hand Pose Estimation pdf

Haoyu Ma, Deying Kong, Xiaohui Xie, 2020, BMVC.

Gene expression inference with deep learning

A. Subramanian, Yifei Chen, Xiaohui Xie, 2015, bioRxiv.

Understanding sequence conservation with deep learning

Yi Li, Xiaohui Xie, Daniel Quang, 2017, bioRxiv.

Identifying gene regulatory networks in schizophrenia

S. Potkin, J. Turner, M. Vawter, 2010, NeuroImage.

Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity

Yi Li, Xiaohui Xie, Xiaohui Xie, 2014, Bioinform..

DeepLung: 3D Deep Convolutional Nets for Automated Pulmonary Nodule Detection and Classification

Xiaohui Xie, Wentao Zhu, Wei Fan, 2017, bioRxiv.

DANN: a deep learning approach for annotating the pathogenicity of genetic variants

Yifei Chen, Daniel Quang, Xiaohui Xie, 2015, Bioinform..

Data structures and compression algorithms for high-throughput sequencing technologies

Xiaohui Xie, Pierre Baldi, Paul Rigor, 2010, BMC Bioinformatics.

SNP-based pathway enrichment analysis for genome-wide association studies

A. Subramanian, S. Potkin, Lingjie Weng, 2011, BMC Bioinformatics.