J. Chun

J. Chun, P. Petrucka, R. Kazwala, 2018, International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.

VCGIDB: A Database and Web Resource for the Genomic Islands from Vibrio cholerae

J. Chun, Sung-min Ha, Inwoo Baek, 2019, Pathogens.

Multilocus sequence typing analysis of Shigella flexneri isolates collected in Asian countries.

D. W. Kim, J. Wain, G. Dougan, 2007, Journal of medical microbiology.

Study on Prokaryotic Community Structure in Moist Acidic Tundra Soil in Council, Alaska

J. Chun, H. Kim, 2008 .

Towards A Practical Species Concept for Cultivable Bacteria

J. Chun, M. Goodfellow, G. Manfio, 1997 .

Replication of Vibrio cholerae classical CTX phage

D. W. Kim, J. Chun, S. Han, 2017, Proceedings of the National Academy of Sciences.

The Genus Vibrio and Related Genera

J. Chun, R. Colwell, S. Choi, 2015, Practical Handbook of Microbiology.

Classical RS1 and environmental RS1 elements in Vibrio cholerae O1 El Tor strains harbouring a tandem repeat of CTX prophage: revisiting Mozambique in 2005.

D. W. Kim, J. Chun, G. Nair, 2010, Journal of medical microbiology.

UFCG: database of universal fungal core genes and pipeline for genome-wide phylogenetic analysis of fungi

J. Chun, Martin Steinegger, Dongwook Kim, 2022, bioRxiv.

Phylogeny Trumps Chemotaxonomy: A Case Study Involving Turicella otitidis

J. Chun, M. Goodfellow, Mincheol Kim, 2018, Front. Microbiol..

Burkholderia monticola sp. nov., isolated from mountain soil.

J. Chun, H. Yi, Inwoo Baek, 2015, International journal of systematic and evolutionary microbiology.

Genomic insights into the taxonomic status of the three subspecies of Bacillus subtilis.

J. Chun, C. Cha, H. Yi, 2014, Systematic and applied microbiology.

Fretibacter rubidus gen. nov., sp. nov., isolated from seawater.

J. Chun, Yong-Joon Cho, H. Yi, 2013, International journal of systematic and evolutionary microbiology.

Microbial diversity of active layer soil from the Canadian high Arctic

J. Chun, B. Lee, Yoo-Kyung Lee, 2011 .

Complete Genome Sequence of Middle East Respiratory Syndrome Coronavirus KOR/KNIH/002_05_2015, Isolated in South Korea

J. Chun, S. Kim, Namil Kim, 2015, Genome Announcements.

Draft Genome Sequence of Escherichia coli AI27, a Porcine Isolate Belonging to Phylogenetic Group B1

J. Chun, H. Hur, Kihyun Lee, 2012, Journal of bacteriology.

Identification of essential genes in Streptococcus pneumoniae by allelic replacement mutagenesis.

Jae-Hoon Song, K. Ko, J. Chun, 2005, Molecules and cells.

Neisseria weaveri Andersen et al. 1993 is a later heterotypic synonym of Neisseria weaveri Holmes et al. 1993.

J. Chun, H. Yi, 2015, International journal of systematic and evolutionary microbiology.

Proposal to transferFlavobacteriumoceanosedimentum Carty and Litch¢eld1978 to the genusCurtobacterium as Curtobacterium oceanosedimentumcomb. nov.

J. Chun, O. Kim, Byung Kwon Kim, 2009 .

Systematic analysis of xanthomonads (Xanthomonas spp.) associated with pepper and tomato lesions.

E. Almira, J. Chun, J. B. Jones, 2000, International journal of systematic and evolutionary microbiology.

Genomic and evolutionary study from SARS-CoV-2 virus isolates from Bangladesh during the early stage of pandemic strongly correlate with European origin and not with China

J. Chun, R. Colwell, M. H. Razu, 2022, Genomics.

Reassessment of the systematics of the suborder Pseudonocardineae: transfer of the genera within the family Actinosynnemataceae Labeda and Kroppenstedt 2000 emend. Zhi et al. 2009 into an emended family Pseudonocardiaceae Embley et al. 1989 emend. Zhi et al. 2009.

J. Chun, Xiao-Yang Zhi, W. Li, 2011, International journal of systematic and evolutionary microbiology.

New Approaches to Prokaryotic Systematics

J. Chun, M. Goodfellow, I. Sutcliffe, 2014 .

Reclassification of Flavobacterium resinovorum Delaporte and Daste 1956 as Novosphingobium resinovorum comb. nov., with Novosphingobium subarcticum (Nohynek et al. 1996) Takeuchi et al. 2001 as a later heterotypic synonym.

J. Chun, Y. Lim, E. Moon, 2007, International journal of systematic and evolutionary microbiology.

Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975 AL is a later subjective synonym

J. Chun, K. Bae, M. Rhee, 2001 .

Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975AL is a later subjective synonym of Pseudomonas putida (Trevisan 1889) Migula 1895AL.

J. Chun, K. Bae, M. Rhee, 2001, International journal of systematic and evolutionary microbiology.

Remarkable Bacterial Diversity in the Tidal Flat Sediment as Revealed by 16S rDNA Analysis

J. Chun, Hojeong Kang, S. Park, 2004 .

Genome Sequence of Lactobacillus salivarius GJ-24, a Probiotic Strain Isolated from Healthy Adult Intestine

J. Chun, H. Paik, Geun-Bae Kim, 2011, Journal of bacteriology.

Draft Genome Sequence of Methylophaga aminisulfidivorans MPT

J. Chun, S. Kim, G. Han, 2011, Journal of bacteriology.

Transfer of Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordona as Gordona amarae comb. nov.

J. Chun, M. Goodfellow, S. Stubbs, 1994, Letters in applied microbiology.

Spatial Scaling Effects on Soil Bacterial Communities in Malaysian Tropical Forests

J. Chun, N. Shukor, Mincheol Kim, 2014, Microbial Ecology.

Phylogenetic study of the species within the family Streptomycetaceae

A. Oguchi, H. Kikuchi, J. Chun, 2011, Antonie van Leeuwenhoek.

A Hump-Backed Trend in Bacterial Diversity with Elevation on Mount Fuji, Japan

J. Chun, Mincheol Kim, Jonathan M Adams, 2012, Microbial Ecology.

Taxonomic composition and variation in the gut microbiota of laboratory mice

J. Chun, Junwon Yang, 2021, Mammalian Genome.

Unification of the genera Nonlabens, Persicivirga, Sandarakinotalea and Stenothermobacter into a single emended genus, Nonlabens, and description of Nonlabens agnitus sp. nov.

J. Chun, H. Yi, 2012, Systematic and applied microbiology.

Bacterial community structure in kimchi, a Korean fermented vegetable food, as revealed by 16S rRNA gene analysis.

J. Chun, Myungjin Kim, 2005, International journal of food microbiology.

Metschnikowia koreensis sp. nov., a novel yeast species isolated from flowers in Korea.

J. Chun, K. Bae, H. Oh, 2001, International journal of systematic and evolutionary microbiology.

Anaerosporobacter mobilis gen. nov., sp. nov., isolated from forest soil.

J. Chun, Y. Kamagata, Y. Lim, 2007, International journal of systematic and evolutionary microbiology.

Nocardia crassostreae sp. nov., the causal agent of nocardiosis in Pacific oysters.

J. Chun, M. Goodfellow, R. Hedrick, 1998, International journal of systematic bacteriology.

ContEst16S: an algorithm that identifies contaminated prokaryotic genomes using 16S RNA gene sequences.

J. Chun, Seok-Hwan Yoon, Sung-min Ha, 2017, International journal of systematic and evolutionary microbiology.

Pyrosequencing Analysis of Subgingival Microbiota in Distinct Periodontal Conditions

J. Chun, K. Kum, S. Han, 2015, Journal of dental research.

Polyphasic assignment of an aromatic-degrading Pseudomonas sp., strain DJ77, in the genus Sphingomonas as Sphingomonas chungbukensis sp. nov.

J. Chun, K. Bae, Y. Kim, 2000, International journal of systematic and evolutionary microbiology.

A large-scale evaluation of algorithms to calculate average nucleotide identity

J. Chun, Seok-Hwan Yoon, Sung-min Ha, 2017, Antonie van Leeuwenhoek.

Idiomarina gen. nov., comprising novel indigenous deep-sea bacteria from the Pacific Ocean, including descriptions of two species, Idiomarina abyssalis sp. nov. and Idiomarina zobellii sp. nov.

J. Chun, R. Colwell, A. Huq, 2000, International journal of systematic and evolutionary microbiology.

Metagenomic Insights into the Bioaerosols in the Indoor and Outdoor Environments of Childcare Facilities

J. Chun, Sung-min Ha, H. Yi, 2015, PloS one.

Computer assisted classification and identification of actinomycetes

J. Chun, 1995 .

Draft Genome Sequencing of Bacillus sp. Strain M2-6, Isolated from the Roots of Korean Ginseng, Panax ginseng C. A. Meyer, after High-Hydrostatic-Pressure Processing

J. Chun, Chong-Tai Kim, Bong-Soo Kim, 2012, Journal of bacteriology.

Draft Genome Sequence of Weissella koreensis KCTC 3621T

J. Chun, Je Hee Lee, J. Bae, 2012, Journal of bacteriology.

Impact of enrofloxacin on the human intestinal microbiota revealed by comparative molecular analysis.

J. Chun, C. Cerniglia, Bong-Soo Kim, 2012, Anaerobe.

Comparative Genomic and Phylogenomic Analyses Clarify Relationships Within and Between Bacillus cereus and Bacillus thuringiensis: Proposal for the Recognition of Two Bacillus thuringiensis Genomovars

J. Chun, M. Goodfellow, Kihyun Lee, 2019, Front. Microbiol..

Bacterial community analysis during fermentation of ten representative kinds of kimchi with barcoded pyrosequencing.

J. Chun, C. Jeon, J. Bae, 2012, Food microbiology.

Comamonas koreensis sp. nov., a non-motile species from wetland in Woopo, Korea.

J. Chun, K. Bae, Keun-chul Lee, 2002, International journal of systematic and evolutionary microbiology.

Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea.

J. Chun, F. Rainey, Fred A Rainey, 2014, International journal of systematic and evolutionary microbiology.

A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences.

J. Chun, M. Goodfellow, 1995, International journal of systematic bacteriology.

Emotional well-being and gut microbiome profiles by enterotype

J. Chun, I. Choi, Namil Kim, 2020, Scientific Reports.

Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species

Bradd J. Haley, J. Eisen, J. Chun, 2015, Proceedings of the National Academy of Sciences.

Nocardia salmonicida nom. rev., a fish pathogen.

J. Chun, M. Goodfellow, Y. Hah, 1999, International journal of systematic bacteriology.

Genomic characterization of Nocardia seriolae strains isolated from diseased fish

J. Chun, M. Kwak, Sung-min Ha, 2018, MicrobiologyOpen.

The Complete Genome Sequence of Thermococcus onnurineus NA1 Reveals a Mixed Heterotrophic and Carboxydotrophic Metabolism

J. Chun, R. Colwell, S. Cha, 2008, Journal of bacteriology.

Use of barcoded pyrosequencing and shared OTUs to determine sources of fecal bacteria in watersheds.

Michael J Sadowsky, Hor-Gil Hur, J. Chun, 2010, Environmental science & technology.

Clostridium ganghwense sp. nov., isolated from tidal flat sediment.

J. Chun, Seil Kim, Sanggoo S Kim, 2006, International journal of systematic and evolutionary microbiology.

16S rRNA Gene-Based Identification of Bacteria and Archaea using the EzTaxon Server

J. Chun, Mincheol Kim, 2014 .

Arenibacter gen. nov., new genus of the family flavobacteriaceae and description of a new species, Arenibacter latericius sp. nov.

J. Chun, R. Colwell, A. Huq, 2001, International journal of systematic and evolutionary microbiology.

Kribbella solani sp. nov. and Kribbella jejuensis sp. nov., isolated from potato tuber and soil in Jeju, Korea.

J. Chun, J. Suh, Seung-Beom Hong, 2004, International journal of systematic and evolutionary microbiology.

Transfer of Hongia koreensis Lee et al. 2000 to the genus Kribbella Park et al. 1999 as Kribbella koreensis comb. nov.

J. Chun, S. Hong, K. Bae, 2003, International journal of systematic and evolutionary microbiology.

Pseudoalteromonas byunsanensis sp. nov., isolated from tidal flat sediment in Korea.

J. Chun, Yoon-Dong Park, H. Yi, 2005, International journal of systematic and evolutionary microbiology.

A single gene of a commensal microbe affects host susceptibility to enteric infection

Chan Yeong Kim, Insuk Lee, J. Chun, 2016, Nature Communications.

Dehalogenimonas formicexedens sp. nov., a chlorinated alkane-respiring bacterium isolated from contaminated groundwater.

J. Chun, F. Rainey, W. Moe, 2017, International journal of systematic and evolutionary microbiology.

Paenibacillus xanthinilyticus sp. nov., isolated from agricultural soil.

J. Chun, Song-Gun Kim, Jang-Cheon Cho, 2015, International journal of systematic and evolutionary microbiology.

Burkholderia megalochromosomata sp. nov., isolated from grassland soil.

J. Chun, Kihyun Lee, Sang-Cheol Park, 2015, International journal of systematic and evolutionary microbiology.

Profiling bacterial community in upper respiratory tracts

J. Chun, D. Yong, Yong-Joon Cho, 2014, BMC Infectious Diseases.

Flavobacterium limnosediminis sp. nov., isolated from sediment of a freshwater lake.

J. Chun, Kihyun Lee, Sang-Cheol Park, 2013, International journal of systematic and evolutionary microbiology.

Flavivirga jejuensis gen. nov., sp. nov., and Flavivirga amylovorans sp. nov., new members of the family Flavobacteriaceae isolated from seawater, and emended descriptions of the genera Psychroserpens and Lacinutrix.

J. Chun, Jang-Cheon Cho, H. Yi, 2012, International journal of systematic and evolutionary microbiology.

Comparative genomics of Neisseria weaveri clarifies the taxonomy of this species and identifies genetic determinants that may be associated with virulence.

J. Chun, Seok-Hwan Yoon, Yong-Joon Cho, 2012, FEMS microbiology letters.

Pontirhabdus pectinivorans gen. nov., sp. nov., isolated from seawater.

J. Chun, Jang-Cheon Cho, H. Yi, 2011, International journal of systematic and evolutionary microbiology.

Zobellella aerophila sp. nov., isolated from seashore sand, and emended description of the genus Zobellella.

J. Chun, Jang-Cheon Cho, H. Yi, 2011, International journal of systematic and evolutionary microbiology.

Aquimarina addita sp. nov., isolated from seawater.

J. Chun, H. Yi, 2011, International journal of systematic and evolutionary microbiology.

Snuella lapsa gen. nov., sp. nov., isolated from tidal flat sediment.

J. Chun, H. Yi, 2011, International journal of systematic and evolutionary microbiology.

Marinifilum fragile gen. nov., sp. nov., isolated from tidal flat sediment.

J. Chun, Hyunsoo Na, Seil Kim, 2009, International journal of systematic and evolutionary microbiology.

Proposal to transfer Flavobacterium oceanosedimentum Carty and Litchfield 1978 to the genus Curtobacterium as Curtobacterium oceanosedimentum comb. nov.

J. Chun, O. Kim, Byung Kwon Kim, 2009, FEMS microbiology letters.

Diversity of bacterial community in freshwater of Woopo wetland

J. Chun, K. Bae, Eun Mi Kim, 2008, The Journal of Microbiology.

Luteimonas marina sp. nov., isolated from seawater.

J. Chun, Mi Sun Kim, Eun Mi Kim, 2008, International journal of systematic and evolutionary microbiology.

Nocardioides dokdonensis sp. nov., an actinomycete isolated from sand sediment.

J. Chun, Mi Sun Kim, C. Seong, 2008, International journal of systematic and evolutionary microbiology.

Actibacter sediminis gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from tidal flat sediment.

J. Chun, Bong-Soo Kim, C. Cha, 2006, International journal of systematic and evolutionary microbiology.

Clostridium aestuarii sp. nov., from tidal flat sediment.

J. Chun, Seil Kim, Hyunyoung Jeong, 2007, International journal of systematic and evolutionary microbiology.

Taxonomic evaluation of the genera Ruegeria and Silicibacter: a proposal to transfer the genus Silicibacter Petursdottir and Kristjansson 1999 to the genus Ruegeria Uchino et al. 1999.

J. Chun, Y. Lim, H. Yi, 2007, International journal of systematic and evolutionary microbiology.

Demequina aestuarii gen. nov., sp. nov., a novel actinomycete of the suborder Micrococcineae, and reclassification of Cellulomonas fermentans Bagnara et al. 1985 as Actinotalea fermentans gen. nov., comb. nov.

J. Chun, P. Schumann, H. Yi, 2007, International journal of systematic and evolutionary microbiology.

Pseudomonas segetis sp. nov., isolated from soil.

J. Chun, Yoon-Dong Park, H. Yi, 2006, International journal of systematic and evolutionary microbiology.

Glaciecola nitratireducens sp. nov., isolated from seawater.

J. Chun, Yoon-Dong Park, K. Bae, 2006, International journal of systematic and evolutionary microbiology.

Hymenobacter rigui sp. nov., isolated from wetland freshwater.

J. Chun, Yoon-Dong Park, H. Yi, 2006, International journal of systematic and evolutionary microbiology.

Flavobacterium weaverense sp. nov. and Flavobacterium segetis sp. nov., novel psychrophiles isolated from the Antarctic.

J. Chun, H. Yi, 2006, International journal of systematic and evolutionary microbiology.

Thalassobius aestuarii sp. nov., isolated from tidal flat sediment.

J. Chun, H. Yi, 2006, Journal of microbiology.

Photobacterium ganghwense sp. nov., a halophilic bacterium isolated from sea water.

J. Chun, Yoon-Dong Park, K. Bae, 2006, International journal of systematic and evolutionary microbiology.

Tenacibaculum litoreum sp. nov., isolated from tidal flat sediment.

J. Chun, D. Choi, H. Yi, 2006, International journal of systematic and evolutionary microbiology.

Jannaschia seosinensis sp. nov., isolated from hypersaline water of a solar saltern in Korea.

J. Chun, D. Choi, H. Yi, 2006, International journal of systematic and evolutionary microbiology.

Pseudomonas panacis sp. nov., isolated from the surface of rusty roots of Korean ginseng.

J. Chun, Yoon-Dong Park, H. Lee, 2005, International journal of systematic and evolutionary microbiology.

Archaeal diversity in tidal flat sediment as revealed by 16S rDNA analysis.

J. Chun, Hojeong Kang, Bong-Soo Kim, 2005, Journal of microbiology.

Hahella ganghwensis sp. nov., isolated from tidal flat sediment.

J. Chun, H. Yi, K. Bae, 2005, International journal of systematic and evolutionary microbiology.

Flavobacterium antarcticum sp. nov., a novel psychrotolerant bacterium isolated from the Antarctic.

J. Chun, Sang-Jin Kim, Jung-Hyun Lee, 2005, International journal of systematic and evolutionary microbiology.

Phylogeny of mycolic acid-containing actinomycetes

J. Chun, M. Goodfellow, Y. Hah, 1996, Journal of Industrial Microbiology.

Sejongia antarctica gen. nov., sp. nov. and Sejongia jeonii sp. nov., isolated from the Antarctic.

J. Chun, H. Yoon, H. Yi, 2005, International journal of systematic and evolutionary microbiology.

Clostridium jejuense sp. nov., isolated from soil.

J. Chun, Y. Kamagata, Y. Sekiguchi, 2004, International journal of systematic and evolutionary microbiology.

Serinicoccus marinus gen. nov., sp. nov., a novel actinomycete with L-ornithine and L-serine in the peptidoglycan.

J. Chun, P. Schumann, H. Yi, 2004, International journal of systematic and evolutionary microbiology.

Nocardioides ganghwensis sp. nov., isolated from tidal flat sediment.

J. Chun, H. Yi, 2004, International journal of systematic and evolutionary microbiology.

Kordia algicida gen. nov., sp. nov., an algicidal bacterium isolated from red tide.

J. Chun, Sang-Jin Kim, Jung-Hyun Lee, 2004, International journal of systematic and evolutionary microbiology.

Phylogenetic analysis of the genera Streptomyces and Kitasatospora based on partial RNA polymerase beta-subunit gene (rpoB) sequences.

Y. Kook, J. Chun, C. Cha, 2004, International journal of systematic and evolutionary microbiology.

Thalassomonas ganghwensis sp. nov., isolated from tidal flat sediment.

J. Chun, H. Yi, K. Bae, 2004, International journal of systematic and evolutionary microbiology.

Aestuariibacter salexigens gen. nov., sp. nov. and Aestuariibacter halophilus sp. nov., isolated from tidal flat sediment, and emended description of Alteromonas macleodii.

J. Chun, H. Yi, K. Bae, 2004, International journal of systematic and evolutionary microbiology.

Hongiella mannitolivorans gen. nov., sp. nov., Hongiella halophila sp. nov. and Hongiella ornithinivorans sp. nov., isolated from tidal flat sediment.

J. Chun, H. Yi, 2004, International journal of systematic and evolutionary microbiology.

Zooshikella ganghwensis gen. nov., sp. nov., isolated from tidal flat sediments.

J. Chun, H. Yi, K. Bae, 2003, International journal of systematic and evolutionary microbiology.

Tsukamurella spumae sp. nov., a novel actinomycete associated with foaming in activated sludge plants.

Wonyong Kim, J. Chun, J. Zakrzewska‐Czerwińska, 2003, Systematic and applied microbiology.

Transfer of Tsukamurella wratislaviensis Goodfellow et a. 1995 to the genus Rhodococcus as Rhodococcus wratislaviensis comb. nov..

J. Chun, E. Stackebrandt, M. Goodfellow, 2002, International journal of systematic and evolutionary microbiology.

Nocardiopsis kunsanensis sp. nov., a moderately halophilic actinomycete isolated from a saltern.

J. Chun, H. Lee, Sang-Jin Kim, 2000, International journal of systematic and evolutionary microbiology.

Paenibacillus koreensis sp. nov., a new species that produces an iturin-like antifungal compound.

J. Chun, C. H. Kim, I. Hwang, 2000, International journal of systematic and evolutionary microbiology.

Detection of luciferase gene sequences in nonluminescent bacteria from the Chesapeake Bay.

J. Ravel, R. Hill, J. Chun, 2000, FEMS microbiology ecology.

A proposal for the reclassification of Bdellovibrio stolpii and Bdellovibrio starrii into a new genus, Bacteriovorax gen. nov. as Bacteriovorax stolpii comb. nov. and Bacteriovorax starrii comb. nov., respectively.

J. Ravel, R. Hill, J. Chun, 2000, International journal of systematic and evolutionary microbiology.

Reclassification of Alteromonas distincta Romanenko et al. 1995 as Pseudoalteromonas distincta comb. nov.

J. Chun, R. Colwell, A. Huq, 2000, International journal of systematic and evolutionary microbiology.

Amycolatopsis thermoflava sp. nov., a novel soil actinomycete from Hainan Island, China.

S. B. Kim, J. Chun, M. Goodfellow, 1999, International journal of systematic bacteriology.

Analysis of 16S-23S rRNA Intergenic Spacer Regions of Vibrio cholerae and Vibrio mimicus

J. Chun, R. Colwell, A. Huq, 1999, Applied and Environmental Microbiology.

Kitasatospora cheerisanensis sp. nov., a new species of the genus Kitasatospora that produces an antifungal agent.

J. Chun, K. Bae, J. Nam, 1999, International journal of systematic bacteriology.

Activated sludge foaming: the true extent of actinomycete diversity

J. Chun, M. Goodfellow, T. Curtis, 1998 .

Streptomyces seoulensis sp. nov.

J. Chun, H. Youn, S. O. Kang, 1997, International journal of systematic bacteriology.

Amycolatopsis japonicum sp. nov., an Actinomycete Producing (S,S)-N,N'-Ethylenediaminedisuccinic Acid

M. Collins, J. Chun, M. Goodfellow, 1997 .

Analysis of Thermophilic Clades within the Genus Streptomyces by 16s Ribosomal DNA Sequence Comparisons

J. Chun, M. Goodfellow, Y. Hah, 1996 .

Rapid characterisation and identification of mycobacteria using fluorogenic enzyme tests.

D. Minnikin, J. Chun, J. Magee, 1994, Zentralblatt fur Bakteriologie : international journal of medical microbiology.

jPHYDIT: a JAVA-based integrated environment for molecular phylogeny of ribosomal RNA sequences

Jongsik Chun, Jae-Hak Lee, Sunyoung Park, 2005, Bioinform..

Current Status and Future Promise of the Human Microbiome

Bong-Soo Kim, Yoon-Seong Jeon, J. Chun, 2013, Pediatric gastroenterology, hepatology & nutrition.

Pyrosequencing-based Molecular Monitoring of the Intestinal Bacterial Colonization in Preterm Infants

J. Chun, J. Chang, Jae-Hak Lee, 2011, Journal of pediatric gastroenterology and nutrition.

Proposal of a health gut microbiome index based on a meta-analysis of Korean and global population datasets

J. Chun, Namil Kim, Hyun-Seok Oh, 2022, Journal of Microbiology.

Comparison of the Gut Microbiota of Centenarians in Longevity Villages of South Korea with Those of Other Age Groups.

J. Chung, J. Chun, Hyoseung Shin, 2019, Journal of microbiology and biotechnology.

Taxonomic composition and variation in the gut microbiota of laboratory mice

J. Chun, Junwon Yang, 2021, Mammalian Genome.

Rapid phylogenetic dissection of prokaryotic community structure in tidal flat using pyrosequencing

J. Chun, Y. Lim, Jae-Hak Lee, 2008, The Journal of Microbiology.

Genome Sequence of Escherichia coli J53, a Reference Strain for Genetic Studies

J. Chun, D. Yong, Yong-Joon Cho, 2012, Journal of bacteriology.

Comparative genomics of clinical and environmental Vibrio mimicus

Bradd J. Haley, J. Chun, R. Colwell, 2010, Proceedings of the National Academy of Sciences.

Lacinutrix jangbogonensis sp. nov., a psychrophilic bacterium isolated from Antarctic marine sediment and emended description of the genus Lacinutrix

J. Chun, H. Lee, You-Jung Jung, 2014, Antonie van Leeuwenhoek.

Lacinutrix jangbogonensis sp. nov., a psychrophilic bacterium isolated from Antarctic marine sediment and emended description of the genus Lacinutrix

J. Chun, H. Lee, You-Jung Jung, 2014, Antonie van Leeuwenhoek.

Maribacter arcticus sp. nov., isolated from Arctic marine sediment.

J. Chun, H. Lee, Yoo-Kyung Lee, 2008, International journal of systematic and evolutionary microbiology.

Rapid identification of streptomycetes by artificial neural network analysis of pyrolysis mass spectra.

A C Ward, S. B. Kim, J. Chun, 1993, FEMS microbiology letters.

Improved pipeline for reducing erroneous identification by 16S rRNA sequences using the Illumina MiSeq platform

J. Chun, Bong-Soo Kim, Jeongmin Lim, 2015, Journal of Microbiology.

Vertical distribution of bacterial community is associated with the degree of soil organic matter decomposition in the active layer of moist acidic tundra

J. Chun, H. Ro, J. Jung, 2016, Journal of Microbiology.

Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska

L. Hinzman, J. Chun, É. Yergeau, 2014, FEMS microbiology ecology.

Improved Metagenomic Taxonomic Profiling Using a Curated Core Gene-Based Bacterial Database Reveals Unrecognized Species in the Genus Streptococcus

J. Chun, Seok-Hwan Yoon, Sung-min Ha, 2020, Pathogens.

The Effect of Probiotics on Gut Microbiota during the Helicobacter pylori Eradication: Randomized Controlled Trial

Bong-Soo Kim, Byeong Gwan Kim, Ji Won Kim, 2016, Helicobacter.

Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity

J. Chun, Sein Park, Dongwook Kim, 2021, Journal of Microbiology.

Large-Scale Genomics Reveals the Genetic Characteristics of Seven Species and Importance of Phylogenetic Distance for Estimating Pan-Genome Size

J. Chun, Kihyun Lee, Sang-Cheol Park, 2019, Front. Microbiol..

Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae

Bradd J. Haley, D. W. Kim, J. Chun, 2009, Proceedings of the National Academy of Sciences.

Tropical Soil Bacterial Communities in Malaysia: pH Dominates in the Equatorial Tropics Too

J. Chun, R. Rahim, Mincheol Kim, 2012, Microbial Ecology.

Identification of Household Bacterial Community and Analysis of Species Shared with Human Microbiome

Bong-Soo Kim, Yoon-Seong Jeon, J. Chun, 2013, Current Microbiology.

Genomic Insight Into the Predominance of Candidate Phylum Atribacteria JS1 Lineage in Marine Sediments

Seung Chul Shin, J. Chun, H. Lee, 2018, Front. Microbiol..

Genomic evolution of Vibrio cholerae.

D. W. Kim, J. Chun, Je Hee Lee, 2010, Current opinion in microbiology.

Multilocus sequence typing (MLST) analysis of Vibrio cholerae O1 El Tor isolates from Mozambique that harbour the classical CTX prophage.

D. W. Kim, J. Chun, D. Sack, 2006, Journal of medical microbiology.

Telomere maintenance through recruitment of internal genomic regions

M. Hills, J. Chun, J. Shim, 2015, Nature Communications.

Discovery of novel Vibrio cholerae VSP-II genomic islands using comparative genomic analysis.

J. Chun, R. Colwell, A. Huq, 2010, FEMS microbiology letters.

A Multilayered Screening Method for the Identification of Regulatory Genes in Rice by Agronomic Traits

J. Chun, S. Won, Y. Shin, 2016, Evolutionary bioinformatics online.

Genome sequence of the organohalide-respiring Dehalogenimonas alkenigignens type strain (IP3-3T)

J. Chun, F. Rainey, W. Moe, 2016, Standards in genomic sciences.

Rhodococcal systematics: problems and developments

J. Chun, M. Goodfellow, G. Alderson, 1998, Antonie van Leeuwenhoek.

Large-scale evaluation of experimentally determined DNA G+C contents with whole genome sequences of prokaryotes.

J. Chun, Mincheol Kim, Sang-Cheol Park, 2015, Systematic and applied microbiology.

Comparison of the genome profiles between head and body lice

Ju Hyeon Kim, J. Chun, J. Clark, 2015 .

Chromosomal cephalosporinase in Enterobacter hormaechei as an ancestor of ACT-1 plasmid-mediated AmpC β-lactamase.

J. Chun, Wonkeun Song, D. Yong, 2012, Journal of medical microbiology.

Characterization of Gut Microbiome in Korean Patients with Metabolic Associated Fatty Liver Disease

J. Chun, Joo Hyun Oh, W. Kang, 2021, Nutrients.

Analysis of Full-Length Metagenomic 16S Genes by SMRT ® Sequencing

Jongsik Chun, Jong Eun Lee, Mi Young Shin, 2013 .

The pre-seventh pandemic Vibrio cholerae BX 330286 El Tor genome: evidence for the environment as a genome reservoir.

J. Chun, R. Colwell, Cliff Han, 2010, Environmental microbiology reports.

Occurrence of the Vibrio cholerae seventh pandemic VSP-I island and a new variant.

Bradd J. Haley, J. Chun, R. Colwell, 2010, Omics : a journal of integrative biology.

Report on 31 unrecorded bacterial species in Korea that belong to the phylum Actinobacteria

J. Chun, Jung-Hye Choi, C. Jeon, 2016 .

Comparative approach to capture bacterial diversity of coastal waters

J. Chun, Hyunsoo Na, Seok-Hwan Yoon, 2011, The Journal of Microbiology.

Assessment of soil fungal communities using pyrosequencing

J. Chun, Y. Lim, H. Jung, 2010, The Journal of Microbiology.

Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae

Bradd J. Haley, J. Chun, R. Colwell, 2010, BMC Microbiology.

Characterization of intratissue bacterial communities and isolation of Escherichia coli from oral lichen planus lesions

J. Chun, H. Park, K. Baek, 2020, Scientific Reports.

Correlation between microbial community structure and biofouling in a laboratory scale membrane bioreactor with synthetic wastewater

Byoung-In Sang, Kyung-Min Yeon, Chung-Hak Lee, 2012 .

A method for comparing multiple bacterial community structures from 16S rDNA clone library sequences.

J. Chun, Inae Hur, 2004, Journal of microbiology.

A report of 10 unrecorded bacterial species of Korea, belonging to the phylum Firmicutes

J. Chun, C. Jeon, J. Bae, 2015 .

The analysis of oral microbial communities of wild-type and toll-like receptor 2-deficient mice using a 454 GS FLX Titanium pyrosequencer

J. Chun, Jae-Hak Lee, Youngnim Choi, 2010, BMC Microbiology.

A proposal to reclassify Nocardia pinensis Blackall et al. as Skermania piniformis gen. nov., comb. nov.

J. Chun, M. Goodfellow, S. O. Kang, 1997, International journal of systematic bacteriology.

Changes in the Intestinal Microbiota of Patients with Inflammatory Bowel Disease with Clinical Remission during an 8-Week Infliximab Infusion Cycle

D. Chang, J. Chun, Je-Gun Joung, 2020, Microorganisms.

Distinctive Phyllosphere Bacterial Communities in Tropical Trees

J. Chun, Mincheol Kim, Jonathan M Adams, 2012, Microbial Ecology.

VicPred: A Vibrio cholerae Genotype Prediction Tool

D. W. Kim, J. Chun, Sung-min Ha, 2021, Frontiers in Microbiology.

Comparative Genomic Analysis of the 2016 Vibrio cholerae Outbreak in South Korea

Jonathan A. Cooper, T. Pollard, J. Chun, 2019, Front. Public Health.

TAXONOMY OF PROKARYOTES-NEW CHALLENGES IN A GLOBAL WORLD

J. Chun, P. Kämpfer, 2016 .

UBCG2: Up-to-date bacterial core genes and pipeline for phylogenomic analysis

J. Chun, Seong-In Na, Jihyeon Kim, 2021, Journal of Microbiology.

A Vanillin Derivative Causes Mitochondrial Dysfunction and Triggers Oxidative Stress in Cryptococcus neoformans

J. Chun, Jeongmi Kim, W. Jung, 2014, PloS one.

AMDB: a database of animal gut microbial communities with manually curated metadata

J. Chun, Junwon Yang, Yeonjae Jung, 2021, Nucleic Acids Res..

Compositional Changes in the Gut Microbiota of Responders and Non-responders to Probiotic Treatment Among Patients With Diarrhea-predominant Irritable Bowel Syndrome: A Post Hoc Analysis of a Randomized Clinical Trial

J. Chun, Jeong Wook Kim, C. Choi, 2022, Journal of Neurogastroenterology and Motility.

N-Acetylglucosaminidase activities in wetlands: a global survey

J. Chun, Hojeong Kang, C. Freeman, 2004, Hydrobiologia.

Nocardioides aestuarii sp. nov., isolated from tidal flat sediment.

J. Chun, H. Yi, 2004, International journal of systematic and evolutionary microbiology.

Bacterial community of sediments from the Australian-Antarctic ridge

Sung Hyun Park, J. Chun, You-Jung Jung, 2014, Polar Biology.

Sanguibacter antarcticus sp. nov., isolated from Antarctic sea sand.

J. Chun, J. Yim, H. Lee, 2008, International journal of systematic and evolutionary microbiology.

A report of 39 unrecorded bacterial species in Korea, belonging to the Betaproteobacteria and Gammaproteobacteria

J. Chun, C. Jeon, J. Bae, 2015 .

A defect in iron uptake enhances the susceptibility of Cryptococcus neoformans to azole antifungal drugs.

Yong-Joon Cho, Won Hee Jung, J. Chun, 2012, Fungal genetics and biology : FG & B.

Clonality and Resistome Analysis of KPC-Producing Klebsiella pneumoniae Strain Isolated in Korea Using Whole Genome Sequencing

J. Chun, Bong-Soo Kim, D. Yong, 2014, BioMed research international.

Tsukamurella pseudospumae sp. nov., a novel actinomycete isolated from activated sludge foam.

Wonyong Kim, J. Chun, M. Goodfellow, 2004, International journal of systematic and evolutionary microbiology.

Draft Genome Sequence of Escherichia coli W26, an Enteric Strain Isolated from Cow Feces

J. Chun, H. Hur, Mincheol Kim, 2012, Journal of bacteriology.

Genome Sequence of Escherichia coli AA86, Isolated from Cow Feces

J. Chun, H. Hur, Yong-Joon Cho, 2011, Journal of bacteriology.

Complete Genome Sequence of Vibrio vulnificus MO6-24/O

J. Park, J. Chun, S. Choi, 2011, Journal of bacteriology.

Classification of hybrid and altered Vibrio cholerae strains by CTX prophage and RS1 element structure

D. W. Kim, J. Chun, M. S. Islam, 2009, The Journal of Microbiology.

Genome Sequence of Hybrid Vibrio cholerae O1 MJ-1236, B-33, and CIRS101 and Comparative Genomics with V. cholerae

Bradd J. Haley, J. Chun, R. Colwell, 2010, Journal of bacteriology.

Comparative analysis of the tonsillar microbiota in IgA nephropathy and other glomerular diseases

J. Chun, Bumjo Oh, Bong-Soo Kim, 2020, Scientific Reports.

Identification and characterization of metagenomic fragments from tidal flat sediment

J. Chun, Yoon-Dong Park, H. Oh, 2009, The Journal of Microbiology.

Complete genome sequence of Mycobacterium tuberculosis K from a Korean high school outbreak, belonging to the Beijing family

G. Bai, J. Chun, Sang-Nae Cho, 2015, Standards in Genomic Sciences.

Application of the Whole Genome-Based Bacterial Identification System, TrueBac ID, Using Clinical Isolates That Were Not Identified With Three Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF MS) Systems

Chang Ki Kim, J. Chun, Sung-min Ha, 2019, Annals of laboratory medicine.

Transcriptomic analysis of genes modulated by cyclo(L-phenylalanine-L-proline) in Vibrio vulnificus.

J. Chun, Kun-Soo Kim, Yong-Joon Cho, 2013, Journal of microbiology and biotechnology.

Toll‐like receptor 9 mediates oral bacteria‐induced IL‐8 expression in gingival epithelial cells

J. Chun, B. Min, Yong-Joon Cho, 2012, Immunology and cell biology.

Sphingopyxis marina sp. nov. and Sphingopyxis litoris sp. nov., isolated from seawater.

J. Chun, Y. Lim, Bong-Soo Kim, 2008, International journal of systematic and evolutionary microbiology.

Isolation of Salmonella enterica subspecies enterica serovar Paratyphi B dT+, or Salmonella Java, from Indonesia and alteration of the d-tartrate fermentation phenotype by disrupting the ORF STM 3356.

D. W. Kim, J. Wain, J. Hahn, 2006, Journal of medical microbiology.

Draft Genome Sequence of Shewanella sp. Strain HN-41, Which Produces Arsenic-Sulfide Nanotubes

J. Chun, Sang-Haeng Choi, Hong-Seog Park, 2011, Journal of bacteriology.

Genomic analysis of a novel integrative conjugative element in Vibrio cholerae

J. Chun, R. Colwell, A. Huq, 2009, FEBS letters.

Characterization of biofilm structure and its effect on membrane permeability in MBR for dye wastewater treatment.

Kyung-Min Yeon, Dong Joon Lim, Chung-Hak Lee, 2006, Water research.

Identification of Endophytic Bacteria Isolated from Rusty-colored Root of Korean Ginseng (Panax ginseng) and Its Induction

J. Chun, Jin-hee Kim, H. Lee, 2005 .

Differentiation of actinomycete genera based on partial rpoB gene sequences

Y. Kook, J. Chun, C. Cha, 2003 .

UACG: Up-to-Date Archaeal Core Genes and Software for Phylogenomic Tree Reconstruction

J. Chun, Seong-In Na, M. Chalita, 2023, Journal of Microbiology.

A report of 29 unrecorded bacterial species in Korea, belonging to the Alphaproteobacteria

J. Chun, C. Jeon, J. Bae, 2015 .

Draft Genome Sequence of Klebsiella pneumoniae subsp. pneumoniae DSM 30104T

D. W. Kim, J. Chun, M. Song, 2012 .

Genome Sequence of Lactobacillus ruminis SPM0211, Isolated from a Fecal Sample from a Healthy Korean

J. Chun, A. Lee, Yong-Joon Cho, 2011, Journal of bacteriology.

G E N O M E a N N O U N C E M E N T Genome Sequence of Type Strain of Staphylococcus Aureus Subsp. Aureus

J. Chun, Bong-Soo Kim, C. Cha, 2022 .

Complete Genome Sequence Analysis of Leuconostoc kimchii IMSNU 11154

J. Chun, B. Nahm, G. Jeong, 2010, Journal of bacteriology.

Genome Sequence of the Halotolerant Staphylococcus sp. Strain OJ82, Isolated from Korean Traditional Salt-Fermented Seafood

Woojun Park, J. Chun, J. Sung, 2012, Journal of bacteriology.

Genome Sequence of Pectin-Degrading Alishewanella aestuarii Strain B11T, Isolated from Tidal Flat Sediment

J. Chun, Jaejoon Jung, Sungjo Choi, 2012, Journal of bacteriology.

Genome Sequence of Pectin-Degrading Alishewanella agri, Isolated from Landfill Soil

Woojun Park, J. Chun, J. Sung, 2012, Journal of bacteriology.

Genome Sequence of Extracellular-Protease-Producing Alishewanella jeotgali Isolated from Traditional Korean Fermented Seafood

Woojun Park, J. Chun, Jaejoon Jung, 2012, Journal of bacteriology.

Large scale genomic and evolutionary study reveals SARS-CoV-2 virus isolates from Bangladesh strongly correlate with European origin and not with China

J. Chun, R. Colwell, M. H. Razu, 2021, bioRxiv.

Draft Genome Sequence of Klebsiella pneumoniae subsp. pneumoniae DSM 30104T

D. W. Kim, J. Chun, M. Song, 2012, Journal of bacteriology.

Draft Genome Sequence of Mycobacterium abscessus subsp. bolletii BDT

J. Chun, Sang-Nae Cho, S. Shin, 2012, Journal of bacteriology.

Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes.

J. Chun, Mincheol Kim, Sang-Cheol Park, 2014, International journal of systematic and evolutionary microbiology.

National Research Laboratory of Molecular Microbiology and Toxicology, Center for Food

J. Chun, Kyu-Ho Lee, Soon-Jung Park, 2011 .

Marinifilum fragile gen. nov., sp. nov., isolated from tidal flat sediment.

J. Chun, Hyunsoo Na, Seil Kim, 2009, International journal of systematic and evolutionary microbiology.

Genome sequence of Mycobacterium yongonense RT 955-2015 isolate from a patient misdiagnosed with multidrug-resistant tuberculosis: First clinical detection in Tanzania.

J. Chun, P. Petrucka, R. Kazwala, 2018, International Journal of Infectious Diseases.

Transcriptomic analysis of genes modulated by cyclo(L-phenylalanine-L-proline) in Vibrio vulnificus.

J. Chun, Kun-Soo Kim, Yong-Joon Cho, 2013, Journal of microbiology and biotechnology.

hc-OTU: A Fast and Accurate Method for Clustering Operational Taxonomic Units Based on Homopolymer Compaction

Seunghyun Park, Hyun-Soo Choi, Byunghan Lee, 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Tropical Soil Bacterial Communities in Malaysia: pH Dominates in the Equatorial Tropics Too

J. Chun, R. Rahim, Mincheol Kim, 2012, Microbial Ecology.

Burkholderia monticola sp. nov., isolated from mountain soil.

J. Chun, H. Yi, Inwoo Baek, 2015, International journal of systematic and evolutionary microbiology.

Genome sequence of the chromate-resistant bacterium Leucobacter salsicius type strain M1-8T

J. Chun, J. Bae, Yong-Joon Cho, 2013, Standards in genomic sciences.

Comparative genomics of Neisseria weaveri clarifies the taxonomy of this species and identifies genetic determinants that may be associated with virulence.

J. Chun, Seok-Hwan Yoon, Yong-Joon Cho, 2012, FEMS microbiology letters.

Neisseria weaveri Andersen et al. 1993 is a later heterotypic synonym of Neisseria weaveri Holmes et al. 1993.

J. Chun, H. Yi, 2015, International journal of systematic and evolutionary microbiology.

Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes.

J. Chun, Xue-Wei Xu, A. Oren, 2018, International journal of systematic and evolutionary microbiology.

Genome Sequence of Lactobacillus mucosae LM1, Isolated from Piglet Feces

J. Chun, Je Hee Lee, Geun-Bae Kim, 2012, Journal of bacteriology.

Impact of enrofloxacin on the human intestinal microbiota revealed by comparative molecular analysis.

J. Chun, C. Cerniglia, Bong-Soo Kim, 2012, Anaerobe.

A Hump-Backed Trend in Bacterial Diversity with Elevation on Mount Fuji, Japan

J. Chun, Mincheol Kim, Jonathan M Adams, 2011, Microbial Ecology.

Genomic evolution of Vibrio cholerae.

D. W. Kim, J. Chun, Je Hee Lee, 2010, Current opinion in microbiology.