Justin Johnson

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The genomic basis of trophic strategy in marine bacteria

Matthew Z. DeMaere, N. Kyrpides, F. Robb, 2009, Proceedings of the National Academy of Sciences.

Evolution of genes and genomes on the Drosophila phylogeny

Melanie A. Huntley, Sonja J. Prohaska, Albert J. Vilella, 2007, Nature.

A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes.

A. Halpern, G. Sutton, S. Kravitz, 2006, Proceedings of the National Academy of Sciences of the United States of America.

The Genome of the African Trypanosome Trypanosoma brucei

David M. A. Martin, Mark C. Field, B. Haas, 2005, Science.

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

Evgeny M. Zdobnov, Dan Graur, Christine G. Elsik, 2010, Proceedings of the National Academy of Sciences.

Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire

Bernard Henrissat, Marco Thines, Mark Yandell, 2010, Genome Biology.

A Catalog of Reference Genomes from the Human Microbiome

B. Haas, Q. Zeng, B. Birren, 2010, Science.

Patterns and Implications of Gene Gain and Loss in the Evolution of Prochlorococcus

Feng Chen, Katherine H. Huang, Alla Lapidus, 2007, PLoS genetics.

Correction for Goldberg et al., A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes

Aaron L. Halpern, Granger G. Sutton, Kelvin Li, 2006, Proceedings of the National Academy of Sciences.

Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria

P. Wincker, I. Paulsen, S. Ferriera, 2008, Genome Biology.

Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis

S. Spring, R. Amann, H. Teeling, 2007, Proceedings of the National Academy of Sciences.

Title Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis , its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control Permalink

D. Radune, J. Badger, Y. Peer, 2012 .

Ecotype Diversity and Conversion in Photobacterium profundum Strains

S. Ferriera, F. Lauro, Justin Johnson, 2014, PloS one.

Genome Sequence of the Marine Photoheterotrophic Bacterium Erythrobacter sp. Strain NAP1

P. Falkowski, S. Ferriera, Justin Johnson, 2011, Journal of bacteriology.

Genome Sequence of the Marine Janibacter Sp. Strain HTCC2649

S. Giovannoni, S. Ferriera, Justin Johnson, 2010, Journal of bacteriology.

Draft Genome Sequence of the Chemolithoheterotrophic, Halophilic Methylotroph Methylophaga thiooxydans DMS010

S. Ferriera, Justin Johnson, H. Schäfer, 2011, Journal of bacteriology.

Genome Sequences of Pelagibaca bermudensis HTCC2601T and Maritimibacter alkaliphilus HTCC2654T, the Type Strains of Two Marine Roseobacter Genera

S. Giovannoni, S. Ferriera, Justin Johnson, 2010, Journal of bacteriology.

GENOME ANNOUNCEMENTS Genome Sequences of Pelagibaca bermudensis HTCC2601 T and Maritimibacter alkaliphilus HTCC2654 T , the Type Strains of Two Marine Roseobacter Genera

S. Giovannoni, S. Ferriera, Justin Johnson, 2010 .

Analysis of the Pseudoalteromonas tunicata Genome Reveals Properties of a Surface-Associated Life Style in the Marine Environment

S. Ferriera, T. Thomas, S. Egan, 2008, PloS one.

Complete Genome Sequence of Erythrobacter litoralis HTCC2594

S. Giovannoni, S. Ferriera, Justin Johnson, 2009, Journal of bacteriology.

Mariprofundus ferrooxydans PV-1 the First Genome of a Marine Fe(II) Oxidizing Zetaproteobacterium

J. G. Kuenen, A. Khodursky, S. Ferriera, 2011, PloS one.

Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control

Ujjwal Kumar, Justin Johnson, Daniel Brami, 2011, Genome Biology.

Survey Sequencing and Comparative Analysis of the Elephant Shark (Callorhinchus milii) Genome

Justin Johnson, Robert L Strausberg, Ewen F Kirkness, 2007, PLoS biology.

Aggressive assembly of pyrosequencing reads with mates

Sergey Koren, Jason R. Miller, Granger G. Sutton, 2008, Bioinform..

Genome Sequences of Strains HTCC2148 and HTCC2080, Belonging to the OM60/NOR5 Clade of the Gammaproteobacteria

S. Giovannoni, S. Ferriera, Justin Johnson, 2010, Journal of bacteriology.

Genomic and functional adaptation in surface ocean planktonic prokaryotes

Shibu Yooseph, Andrey Tovchigrechko, Kenneth H. Nealson, 2010, Nature.

Ancient Noncoding Elements Conserved in the Human Genome

Justin Johnson, Robert L Strausberg, Ewen F Kirkness, 2006, Science.

Complete Genome Sequence of Robiginitalea biformata HTCC2501

S. Giovannoni, S. Ferriera, Justin Johnson, 2009, Journal of bacteriology.

Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter

R. Friedman, S. Ferriera, Justin Johnson, 2008, The ISME Journal.

Draft genome sequence of Caminibacter mediatlanticus strain TB-2T, an epsilonproteobacterium isolated from a deep-sea hydrothermal vent

S. Kravitz, C. Vetriani, S. Ferriera, 2011, Standards in genomic sciences.

Complete Genome Sequence of the Deep-Sea Bacterium Psychromonas Strain CNPT3

S. Ferriera, F. Lauro, Justin Johnson, 2013, Genome Announcements.

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

Robert M. Waterhouse, Shelby L. Bidwell, Allison A. Regier, 2010, Proceedings of the National Academy of Sciences.

Mariprofundus ferrooxydans PV-1 the First Genome of a Marine Fe(II) Oxidizing Zetaproteobacterium

A. Khodursky, S. Ferriera, W. Nelson, 2011, PloS one.