D. Zhu

Alfred O. Hero, Dongxiao Zhu, A. Hero, 2005, Proceedings. (ICASSP '05). IEEE International Conference on Acoustics, Speech, and Signal Processing, 2005..

Stem cell aging is controlled both intrinsically and extrinsically in the Drosophila ovary.

Gerald B Call, D. Zhu, T. Xie, 2007, Cell stem cell.

A Survey of Computational Approaches to Reconstruct and Partition Biological Networks

Dongxiao Zhu, Lipi Acharya, Thair Judeh, 2012 .

APPROACHES TO RECONSTRUCT AND PARTITION BIOLOGICAL NETWORKS

Dongxiao Zhu, Lipi Acharya, Thair Judeh, 2012 .

miRNA-Mediated Relationships between Cis-SNP Genotypes and Transcript Intensities in Lymphocyte Cell Lines

Dongxiao Zhu, Andrea Edwards, Erik K. Flemington, 2012, PloS one.

Transcriptome and targetome analysis in MIR155 expressing cells using RNA-seq.

Nan Deng, Dongxiao Zhu, Dale Hedges, 2010, RNA.

using RNA-seq Transcriptome and targetome analysis in MIR 155 expressing cells

M. Lacey, X. Guorong, D. Zhu, 2010 .

Detecting various types of differential splicing events using RNA-Seq data

Nan Deng, Dongxiao Zhu, D. Zhu, 2013, BCB.

BMC Bioinformatics BioMed Central

Dongxiao Zhu, Zhaohui S. Qin, Z. Qin, 2005 .

Putting the ‘mi’ in omics: discovering miRNA biomarkers for pediatric precision care

D. Zhu, S. Hicks, Chengyin Li, 2022, Pediatric Research.

SPATA: A Seeding and Patching Algorithm for Hybrid Transcriptome Assembly pdf

Tin Chi Nguyen, Dongxiao Zhu, Zhiyu Zhao, 2013, ArXiv.

SPATA: A seeding and patching algorithm for de novo transcriptome assembly

Tin Chi Nguyen, Nan Deng, Dongxiao Zhu, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Multinomial classification with class-conditional overlapping sparse feature groups

Dongxiao Zhu, Ming Dong, Xiangrui Li, 2018, Pattern Recognit. Lett..

High Throughput Screening of Co-Expressed Gene Pairs with Controlled False Discovery Rate (FDR) and Minimum Acceptable Strength (MAS)

Alfred O. Hero, Dongxiao Zhu, Zhaohui S. Qin, 2005, J. Comput. Biol..

GSGS: A Computational Approach to Reconstruct Signaling Pathway Structures from Gene Sets

Zhansheng Duan, Dongxiao Zhu, Michael G. Rabbat, 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Optimal structural inference of signaling pathways from unordered and overlapping gene sets

Dongxiao Zhu, Thair Judeh, Lipi R. Acharya, 2012, Bioinform..

GSGS: A Computational Framework to Reconstruct Signaling Pathways from Gene Sets

Michael Rabbat, Zhansheng Duan, Dongxiao Zhu, 2011, 1101.3983.

Multi-task Survival Analysis

Jiayu Zhou, Jieping Ye, Yan Li, 2017, 2017 IEEE International Conference on Data Mining (ICDM).

Poisson-Markov Mixture Model and Parallel Algorithm for Binning Massive and Heterogenous DNA Sequencing Reads

Yan Li, Dongxiao Zhu, Ming Dong, 2016, ISBRA.

COVID-Xpert: An AI Powered Population Screening of COVID-19 Cases Using Chest Radiography Images

Xin Li, Dongxiao Zhu, D. Zhu, 2020 .

svdPPCS: an effective singular value decomposition-based method for conserved and divergent co-expression gene module identification

D. Zhu, W. Fan, Andrea Edwards, 2010, BMC Bioinformatics.

SDT: A Tree Method for Detecting Patient Subgroups with Personalized Risk Factors

Dongxiao Zhu, Ming Dong, Xiangrui Li, 2017, CRI.

MarkovBin: An Algorithm to Cluster Metagenomic Reads Using a Mixture Modeling of Hierarchical Distributions

Tin Chi Nguyen, Dongxiao Zhu, D. Zhu, 2013, BCB.

SUBIC: A Supervised Bi-Clustering Approach for Precision Medicine

Dongxiao Zhu, Kai Yang, Milad Zafar Nezhad, 2017, 2017 16th IEEE International Conference on Machine Learning and Applications (ICMLA).

Cse4 is part of an octameric nucleosome in budding yeast.

A. Shilatifard, J. Workman, D. Zhu, 2009, Molecular cell.

SASeq: A Selective and Adaptive Shrinkage Approach to Detect and Quantify Active Transcripts using RNA-Seq pdf

Tin Chi Nguyen, Nan Deng, Dongxiao Zhu, 2012, ArXiv.

SAMMate: a GUI tool for processing short read alignments in SAM/BAM format

Guorong Xu, Nan Deng, Dongxiao Zhu, 2011, Source Code for Biology and Medicine.

Computer-aided skin cancer diagnosis based on a New meta-heuristic algorithm combined with support vector method

Mingqi Qiao, Fatima Rashid Sheykhahmad, Dezhong Bi, 2021, Biomed. Signal Process. Control..

Object tracking via Dirichlet process-based appearance models

Dongxiao Zhu, Ming Dong, Raed Almomani, 2017, Neural Computing and Applications.

TEAK: Topology Enrichment Analysis frameworK for detecting activated biological subpathways

Dongxiao Zhu, Thair Judeh, Cole Johnson, 2012, Nucleic acids research.

Gene coexpression network discovery with controlled statistical and biological significance

Alfred O. Hero, Dongxiao Zhu, A. Hero, 2005, Proceedings. (ICASSP '05). IEEE International Conference on Acoustics, Speech, and Signal Processing, 2005..

Defending Against Adversarial Attacks On Medical Imaging Ai System, Classification Or Detection? pdf

Xin Li, Dongxiao Zhu, Deng Pan, 2020, 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI).

COVID-MobileXpert: On-Device COVID-19 Screening using Snapshots of Chest X-Ray

D. Zhu, Chengyin Li, Xin Li, 2020, ArXiv.

Vispi: Automatic Visual Perception and Interpretation of Chest X-rays pdf

Xin Li, Rui Cao, Dongxiao Zhu, 2019, ArXiv.

dSpliceType: A Multivariate Model for Detecting Various Types of Differential Splicing Events Using RNA-Seq

Nan Deng, Dongxiao Zhu, D. Zhu, 2014, ISBRA.

iQuant: A fast yet accurate GUI tool for transcript quantification

Guorong Xu, Tin Chi Nguyen, Nan Deng, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Quantitative and Qualitative RNA-Seq-Based Evaluation of Epstein-Barr Virus Transcription in Type I Latency Burkitt's Lymphoma Cells

D. Zhu, N. Deng, E. Flemington, 2010, Journal of Virology.

Clustering over‐dispersed data with mixed feature types

Dongxiao Zhu, Ming Dong, Lu Wang, 2018, Stat. Anal. Data Min..

Multivariate Models and Algorithms for Learning Correlation Structures from Replicated Molecular Profiling Data

Dongxiao Zhu, Lipi R. Acharya, D. Zhu, 2011 .

Interpreting Age Effects of Human Fetal Brain from Spontaneous fMRI Using Deep 3D Convolutional Neural Networks

Dongxiao Zhu, Jasmine Hect, Xiangrui Li, 2019, 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI).

Improving Adversarial Robustness via Probabilistically Compact Loss with Logit Constraints pdf

Dongxiao Zhu, Xin Li, Deng Pan, 2020, AAAI.

COVID-MobileXpert: On-Device COVID-19 Patient Triage and Follow-up using Chest X-rays

Dongxiao Zhu, Xin Li, Chengyin Li, 2020, 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

QSEA for fuzzy subgraph querying of KEGG pathways

Tin Chi Nguyen, Dongxiao Zhu, Thair Judeh, 2012, BCB.

Explainable Recommendation via Interpretable Feature Mapping and Evaluation of Explainability

Xin Li, Dongxiao Zhu, Deng Pan, 2020, IJCAI.

A novel semi-supervised learning approach to analyzing metagenomic reads

Dongxiao Zhu, Xue-wen Chen, Yuliang Geng, 2014, BCB.

Negative Flux Aggregation to Estimate Feature Attributions

D. Zhu, X. Li, Yao Qiang, 2023, ArXiv.

Multi-task Prediction of Patient Workload pdf

Kai Yang, Dongxiao Zhu, Mohammad Hessam Olya, 2018, ArXiv.

CRCEN: A Generalized Cost-sensitive Neural Network Approach for Imbalanced Classification pdf

Dongxiao Zhu, Xiangrui Li, D. Zhu, 2019, ArXiv.

Adversarially Robust and Explainable Model Compression with On-Device Personalization for Text Classification pdf

Dongxiao Zhu, Yao Qiang, Marco Brocanelli, 2021, ArXiv.

Improved Bayesian Network inference using relaxed gene ordering

Hua Li, Dongxiao Zhu, D. Zhu, 2010, Int. J. Data Min. Bioinform..

Fairness-aware Vision Transformer via Debiased Self-Attention

D. Zhu, Yao Qiang, Chengyin Li, 2023, ArXiv.

Text Classification with Topic-based Word Embedding and Convolutional Neural Networks

Dongxiao Zhu, Haotian Xu, April Idalski Carcone, 2016, BCB.

Robust feature selection via l2, 1-norm in finite mixture of regression

Dongxiao Zhu, Xiangrui Li, D. Zhu, 2018, Pattern Recognit. Lett..

Semi-supervised gene shaving method for predicting low variation biological pathways from genome-wide data

Dongxiao Zhu, D. Zhu, 2009, BMC Bioinformatics.

Estimating an Optimal Correlation Structure from Replicated Molecular Profiling Data Using Finite Mixture Models

Dongxiao Zhu, Lipi R. Acharya, D. Zhu, 2009, 2009 International Conference on Machine Learning and Applications.

Representation Learning with Autoencoders for Electronic Health Records: A Comparative Study pdf

Ratna Babu Chinnam, Dongxiao Zhu, Milad Zafar Nezhad, 2018, ArXiv.

On the Learning Property of Logistic and Softmax Losses for Deep Neural Networks pdf

Dongxiao Zhu, Xin Li, Xiangrui Li, 2020, AAAI.

Fairness-aware Vision Transformer via Debiased Self-Attention

D. Zhu, Yao Qiang, Chengyin Li, 2023, ArXiv.

Explaining Deep Neural Network Models with Adversarial Gradient Integration

Dongxiao Zhu, Deng Pan, Xin Li, 2021, IJCAI.

Cse4 is part of an octameric nucleosome in budding yeast.

A. Shilatifard, J. Workman, D. Zhu, 2009, Molecules and Cells.

Optimal structural inference of signaling pathways from unordered and overlapping gene sets

Lipi R. Acharya, D. Zhu, Guangdi Wang, 2012, Bioinform..

Explainable Recommendation via Interpretable Feature Mapping and Evaluation of Explainability

D. Zhu, X. Li, Xiangrui Li, 2020, IJCAI.

Stem cell aging is controlled both intrinsically and extrinsically in the Drosophila ovary.

Gerald B Call, D. Zhu, T. Xie, 2007, Cell stem cell.

Multivariate correlation estimator for inferring functional relationships from replicated genome-wide data

Hua Li, Dongxiao Zhu, Youjuan Li, 2007, Bioinform..

Learning Compact Features via In-Training Representation Alignment

D. Zhu, X. Li, Xiangrui Li, 2022, AAAI.

Tiny RNN Model with Certified Robustness for Text Classification

Supriya Tumkur Suresh Kumar, D. Zhu, Marco Brocanelli, 2022, 2022 International Joint Conference on Neural Networks (IJCNN).

Toward Tag-free Aspect Based Sentiment Analysis: A Multiple Attention Network Approach

Dongxiao Zhu, Xin Li, Yao Qiang, 2020, 2020 International Joint Conference on Neural Networks (IJCNN).

Proteus: network-aware web browsing on heterogeneous mobile systems

Yansong Feng, Dongxiao Zhu, Jie Ren, 2018, CoNEXT.

A Generalized Multivariate Approach to Pattern Discovery from Replicated and Incomplete Genome-Wide Measurements

Hui Zhang, Dongxiao Zhu, Lipi R. Acharya, 2011, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Adversarially robust and explainable model compression with on-device personalization for NLP applications

Supriya Tumkur Suresh Kumar, D. Zhu, Marco Brocanelli, 2021 .

Modeling Over-Dispersion for Network Data Clustering

Yan Li, Dongxiao Zhu, Ming Dong, 2017, 2017 16th IEEE International Conference on Machine Learning and Applications (ICMLA).

A new architecture combining convolutional and transformer-based networks for automatic 3D multi-organ segmentation on CT images.

Rafi Ibn Sultan, I. Chetty, D. Zhu, 2023, Medical physics.

Structural comparison of metabolic networks in selected single cell organisms

Zhaohui S. Qin, D. Zhu, 2005, BMC Bioinformatics.

A Predictive Approach Using Deep Feature Learning for Electronic Medical Records: A Comparative Study pdf

Kai Yang, Dongxiao Zhu, Milad Zafar Nezhad, 2018, ArXiv.

svdPPCS: an effective singular value decomposition-based method for conserved and divergent co-expression gene module identification

Kun Zhang, Wensheng Zhang, Wei Fan, 2010, BMC Bioinformatics.