S. Zhong

发表

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening

S. Zhong, Z. Fei, Yun-Ru Chen, 2013, Nature Biotechnology.

Genome-wide data (ChIP-seq) enabled identification of cell wall-related and aquaporin genes as targets of tomato ASR1, a drought stress-responsive transcription factor

S. Zhong, J. Giovannoni, M. M. Ricardi, 2014, BMC Plant Biology.

The tomato genome sequence provides insights into fleshy fruit evolution

Daniel W. A. Buchan, James R. White, James R. Knight, 2012, Nature.

Non‐homology‐based prediction of gene functions in maize (Zea mays ssp. mays)

James C. Schnable, S. Zhong, Pinghua Li, 2020, The plant genome.

3D Chromatin Architecture of Large Plant Genomes Determined by Local A/B Compartments.

S. Zhong, Pinghua Li, Xiaoyu Tu, 2017, Molecular plant.

Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles

S. Zhong, Z. Fei, Yi Zheng, 2011, BMC Genomics.

Transcriptome analysis of leaves, roots and flowers of Panax notoginseng identifies genes involved in ginsenoside and alkaloid biosynthesis

S. Tsui, S. Zhong, S. Lee, 2015, BMC Genomics.

Transcriptomics-based screen for genes induced by flagellin and repressed by pathogen effectors identifies a cell wall-associated kinase involved in plant immunity

G. Martin, S. Zhong, Z. Fei, 2013, Genome Biology.

Genome-wide identification of long non-coding RNA targets of the tomato MADS box transcription factor RIN and function analysis

David T. W. Tzeng, S. Zhong, Jian-ye Chen, 2018, Annals of botany.

The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions

W. J. Lucas, Jun Wang, Ruiqiang Li, 2012, Nature Genetics.

Draft genome of the kiwifruit Actinidia chinensis

Wei Tang, Danfeng Zhang, Dongyuan Liu, 2013, Nature Communications.

Recent advances in ethylene research.

Silin Zhong, S. Zhong, D. Grierson, 2009, Journal of experimental botany.

MTA Is an Arabidopsis Messenger RNA Adenosine Methylase and Interacts with a Homolog of a Sex-Specific Splicing Factor[W][OA]

Michel Herzog, James Button, Silin Zhong, 2008, The Plant Cell Online.

Identification of factors required for m6A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI

Ykä Helariutta, Ana Campilho, Mi Zhang, 2017, The New phytologist.

The transcription regulatory code of a plant leaf

David T. W. Tzeng, S. Zhong, M. K. Mejía-Guerra, 2020, bioRxiv.

Inter-Species Grafting Caused Extensive and Heritable Alterations of DNA Methylation in Solanaceae Plants

S. Zhong, Bao Liu, Xiaoming Yu, 2013, PloS one.

Ethylene Signalling: The CTR1 Protein Kinase

S. Zhong, Caren Chang, 2012 .

The Tomato Mitogen-Activated Protein Kinase SlMPK1 Is as a Negative Regulator of the High-Temperature Stress Response1[OPEN]

Yijun Wang, S. Zhong, Weifeng Xu, 2018, Plant Physiology.

Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors

David T. W. Tzeng, S. Zhong, M. K. Mejía-Guerra, 2020, Nature Communications.

Identification of Photosynthesis-Associated C4 Candidate Genes through Comparative Leaf Gradient Transcriptome in Multiple Lineages of C3 and C4 Species

S. Zhong, T. Brutnell, Pinghua Li, 2015, PloS one.

Thermal-responsive genetic and epigenetic regulation of DAM cluster controlling dormancy and chilling requirement in peach floral buds

S. Zhong, Pao-Yang Chen, G. Zhong, 2020, Horticulture Research.

Decoding the regulatory architecture of the maize leaf

David T. W. Tzeng, S. Zhong, M. K. Mejía-Guerra, 2020 .

Profiling DNA Methylation Using Bisulfite Sequencing (BS-Seq).

S. Zhong, Yun-Ru Chen, Sheng Yu, 2018, Methods in molecular biology.

Ethylene suppresses tomato (Solanum lycopersicum) fruit set through modification of gibberellin metabolism.

S. Zhong, Z. Fei, Yi Zheng, 2015, The Plant journal : for cell and molecular biology.

Protein localization and interactions in the tomato ethylene signalling pathway

S. Zhong, 2007 .

Comparative genomics of muskmelon reveals a potential role for retrotransposons in the modification of gene expression

S. Zhong, J. Giovannoni, L. Mueller, 2020, Communications Biology.

Transcriptome Responses of the Host Trichoplusia ni to Infection by the Baculovirus Autographa californica Multiple Nucleopolyhedrovirus

S. Zhong, Z. Fei, Yun-Ru Chen, 2014, Journal of Virology.

Manipulation of ZDS in tomato exposes carotenoid‐ and ABA‐specific effects on fruit development and ripening

S. Zhong, Z. Fei, R. McQuinn, 2020, Plant biotechnology journal.

MicroRNA clusters integrate evolutionary constraints on expression and target affinities: the miR-6/5/4/286/3/309 cluster in Drosophila.

S. Zhong, K. Lau, D. Ferrier, 2019, Molecular biology and evolution.

Varying constraints impact the miR-6/5/4/286/3/309 microRNA cluster in Drosophila leg development

S. Zhong, K. Lau, D. Ferrier, 2019, bioRxiv.

A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells

Robert J. Schmitz, Alexandre P. Marand, S. Zhong, 2022, Plant communications.

Plant and animal chromatin three-dimensional organization: similar structures but different functions

S. Zhong, B. Kang, Xiaoyu Tu, 2020 .

Wheat TaWRKY10-1 is involved in biological responses to the salinity and osmostresses in transgenic Arabidopsis plants

S. Zhong, Wenli Yang, Ming Li, 2013 .

LcMCII-1 is involved in the ROS-dependent senescence of the rudimentary leaves of Litchi chinensis

S. Zhong, Peitao Lü, Biyan Zhou, 2016, Plant Cell Reports.

Characterization of novel regulatory modules controlling leaf angle in maize

S. Zhong, Pinghua Li, Kande Lin, 2021, bioRxiv.

The tomato mitogen-activated protein kinase SlMPK1 is as a negative regulator of the high 3 temperature stress response

S. Zhong, Weifeng Xu, E. Peiter, 2018 .

Limited conservation in cross-species comparison of GLK transcription factor binding suggested wide-spread cistrome divergence

S. Zhong, Z. Fei, Pinghua Li, 2022, Nature communications.

Constructing the maize inflorescence regulatory network by using efficient tsCUT&Tag assay

S. Zhong, Yonghao Sun, Fang Yang, 2022, The Crop Journal.

The Epigenome and Transcriptional Dynamics of Fruit Ripening.

S. Zhong, Z. Fei, J. Giovannoni, 2017, Annual review of plant biology.

Tomato GOLDEN2-LIKE Transcription Factors Reveal Molecular Gradients That Function during Fruit Development and Ripening[W][OPEN]

S. Zhong, Z. Fei, Yi Zheng, 2014, Plant Cell.

The Transcriptome of the Baculovirus Autographa californica Multiple Nucleopolyhedrovirus in Trichoplusia ni Cells

S. Zhong, Z. Fei, Yun-Ru Chen, 2013, Journal of Virology.

Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening

David T. W. Tzeng, S. Zhong, Z. Fei, 2018, Nature Plants.

MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato[OPEN]

David T. W. Tzeng, S. Zhong, Chuanyou Li, 2017, Plant Cell.

High-throughput illumina strand-specific RNA sequencing library preparation.

S. Zhong, Z. Fei, Yun-Ru Chen, 2011, Cold Spring Harbor protocols.

Virus-induced gene complementation reveals a transcription factor network in modulation of tomato fruit ripening

S. Zhong, J. Giovannoni, S. Jackson, 2012, Scientific Reports.

Plant and animal chromatin 3D organization, similar structure but different function.

S. Zhong, B. Kang, Xiaoyu Tu, 2020, Journal of experimental botany.

SlGRAS4 mediates a novel regulatory pathway promoting chilling tolerance in tomato

S. Zhong, M. Bouzayen, Zheng-guo Li, 2020, Plant biotechnology journal.

Diversity and redundancy of the ripening regulatory networks revealed by the fruitENCODE and the new CRISPR/Cas9 CNR and NOR mutants

S. Zhong, Yunbo Luo, Ning Zhu, 2019, Horticulture Research.

SlTPR1, a tomato tetratricopeptide repeat protein, interacts with the ethylene receptors NR and LeETR1, modulating ethylene and auxin responses and development

S. Zhong, D. Grierson, Luis Arciga-Reyes, 2008, Journal of experimental botany.

BEL1‐LIKE HOMEODOMAIN 11 regulates chloroplast development and chlorophyll synthesis in tomato fruit

S. Zhong, Jian-ye Chen, Yunbo Luo, 2018, The Plant journal : for cell and molecular biology.

SlBL4 regulates chlorophyll accumulation, chloroplast development and cell wall metabolism in tomato fruit.

S. Zhong, W. Deng, Zheng-guo Li, 2020, Journal of experimental botany.

McMYB4 improves temperature adaptation by regulating phenylpropanoid metabolism and hormone signaling in apple

S. Zhong, Yuncong Yao, Zhen Peng, 2021, Horticulture Research.

McMYB4 improves temperature adaptation by regulating phenylpropanoid metabolism and hormone signaling in apple

S. Zhong, Yuncong Yao, Zhen Peng, 2021, Horticulture research.

De novo transcriptome assembly for rudimentary leaves in Litchi chinesis Sonn. and identification of differentially expressed genes in response to reactive oxygen species

S. Zhong, Hye-Ji Kim, Biyan Zhou, 2014, BMC Genomics.

Identification and characterization of a specific 13-miRNA expression signature during follicle activation in the zebrafish ovary†

S. Zhong, W. Ge, Shuk-Wa Lau, 2017, Biology of Reproduction.

Mutation of a major CG methylase in rice causes genome-wide hypomethylation, dysregulated genome expression, and seedling lethality

S. Zhong, Yun-Ru Chen, Bao Liu, 2014, Proceedings of the National Academy of Sciences.

Incomplete transfer of accessory loci influencing SbMATE expression underlies genetic background effects for aluminum tolerance in sorghum.

S. Zhong, Z. Fei, Yi Zheng, 2013, The Plant journal : for cell and molecular biology.

Adenosine Methylation in Arabidopsis mRNA is Associated with the 3′ End and Reduced Levels Cause Developmental Defects

S. Zhong, N. Graham, S. May, 2012, Front. Plant Sci..

Requirement of CHROMOMETHYLASE3 for somatic inheritance of the spontaneous tomato epimutation Colourless non-ripening

S. Zhong, Yun-Ru Chen, S. Jackson, 2015, Scientific Reports.

Genome-wide DNA methylation in tomato

S. Zhong, R. Fray, 2015 .

Two zinc finger proteins with functions in m6A writing interact with HAKAI

S. Zhong, G. Simpson, N. Mongan, 2022, Nature Communications.

Tissue-specific Hi-C analyses of rice, foxtail millet and maize suggest non-canonical function of plant chromatin domains.

S. Zhong, Jianhua Zhang, Pinghua Li, 2020, Journal of integrative plant biology.

Tissue-specific Hi-C analyses of rice, foxtail millet and maize suggest non-canonical function of plant chromatin domains

S. Zhong, Jianhua Zhang, Pinghua Li, 2019, bioRxiv.

Fast-suppressor screening for new components in protein trafficking, organelle biogenesis and silencing pathway in Arabidopsis thaliana using DEX-inducible FREE1-RNAi plants.

S. Zhong, Peng Zeng, Xuemei Chen, 2015, Journal of genetics and genomics = Yi chuan xue bao.

Cassava genome from a wild ancestor to cultivated varieties

Weixiong Zhang, Binxiao Feng, Songnian Hu, 2014, Nature Communications.

Transcriptome shock in an interspecific F1 triploid hybrid of Oryza revealed by RNA sequencing.

S. Zhong, Bao Liu, Xiuyun Lin, 2016, Journal of integrative plant biology.

De novo transcriptome assembly for rudimentary leaves in Litchi chinesis Sonn. and identification of differentially expressed genes in response to reactive oxygen species

S. Zhong, Biyan Zhou, Houbin Chen, 2014, BMC Genomics.

Tomato ethylene receptor-CTR interactions: visualization of NEVER-RIPE interactions with multiple CTRs at the endoplasmic reticulum.

S. Zhong, D. Grierson, Zhefeng Lin, 2008, Journal of experimental botany.

Genome-Wide Transcriptomic Analysis Reveals a Regulatory Network of Oxidative Stress-Induced Flowering Signals Produced in Litchi Leaves

S. Zhong, Peitao Lü, Biyan Zhou, 2020, Genes.

Using Machine Learning and Gene Nonhomology Features to Predict Gene Ontology

Zheng Xu, James C. Schnable, Zhikai Liang, 2019, bioRxiv.

Non-Homology-Based Prediction of Gene Functions

Zheng Xu, James C. Schnable, Zhikai Liang, 2019 .

Comparative genomics of muskmelon reveals a potential role for retrotransposons in the modification of gene expression

S. Zhong, J. Giovannoni, L. Mueller, 2020, Communications Biology.

Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening

David T. W. Tzeng, S. Zhong, Z. Fei, 2018, Nature Plants.

The fruitENCODE project sheds light on the genetic and epigenetic basis of convergent evolution of climacteric fruit ripening

David T. W. Tzeng, S. Zhong, Z. Fei, 2017, bioRxiv.

METHYLTRANSFERASE1 and Ripening Modulate Vivipary during Tomato Fruit Development1[OPEN]

S. Zhong, S. Jackson, P. Gallusci, 2020, Plant Physiology.

Comparative WGBS identifies genes that influence non-ripe phenotype in tomato epimutant Colourless non-ripening

Paul R. Hunter, S. Zhong, Yiguo Hong, 2018, Science China Life Sciences.

Isolation of flower inducing gene SbCO in sorghum and construction of an inducible SbCO expression vector

S. Zhong, Wenli Yang, B. Ding, 2011, 2011 International Conference on Remote Sensing, Environment and Transportation Engineering.

Analysis of Papaya Cell Wall-Related Genes during Fruit Ripening Indicates a Central Role of Polygalacturonases during Pulp Softening

S. Zhong, J. P. Fabi, F. Lajolo, 2014, PloS one.

Cellsirus in Trichoplusia ni Autographa californica Multiple The Transcriptome of the Baculovirus

S. Zhong, Z. Fei, Jenny Z. Xiang, 2013 .

MYC 2 Orchestrates a Hierarchical Transcriptional Cascade that Regulates 2 Jasmonate-Mediated Plant Immunity in Tomato 3

David T. W. Tzeng, S. Zhong, Chuanyou Li, 2017 .

A novel synthesis and detection method for cap-associated adenosine modifications in mouse mRNA

S. Zhong, M. Alcocer, C. Hayes, 2011, Scientific reports.

Effects of artificial light at night (ALAN) on gene expression of Aquatica ficta firefly larvae.

David T. W. Tzeng, S. Zhong, Yun-Ru Chen, 2021, Environmental pollution.

Missing Nurse Bees—Early Transcriptomic Switch From Nurse Bee to Forager Induced by Sublethal Imidacloprid

David T. W. Tzeng, S. Zhong, Yun-Ru Chen, 2021, Frontiers in Genetics.

Nonuniform gene expression pattern detected along the longitudinal axis in the matured rice leaf

S. Zhong, Z. Fei, Yun-Ru Chen, 2015, Scientific Reports.

A cost-effective method for Illumina small RNA-Seq library preparation using T4 RNA ligase 1 adenylated adapters

S. Zhong, Z. Fei, Yun-Ru Chen, 2012, Plant Methods.

Characterization of regulatory modules controlling leaf angle in maize.

S. Zhong, Pinghua Li, Kande Lin, 2022, Plant Physiology.

A combinatorial indexing strategy for epigenomic profiling of plant single cells

Robert J. Schmitz, Alexandre P. Marand, S. Zhong, 2021 .

Phytohormone ethylene mediates oligogalacturonic acid-induced growth inhibition in tomato etiolated seedlings.

S. Zhong, Yunbo Luo, Leilei Zhou, 2023, Plant science : an international journal of experimental plant biology.

Thylakoid-Bound Polysomes and a Dynamin-Related Protein, FZL, Mediate Critical Stages of the Linear Chloroplast Biogenesis Program in Greening Arabidopsis Cotyledons[OPEN]

David T. W. Tzeng, S. Zhong, L. Staehelin, 2018, Plant Cell.

Identification of Genes Involved in Low Temperature-Induced Senescence of Panicle Leaf in Litchi chinensis

S. Zhong, F. Hu, Biyan Zhou, 2019, Genes.

Identification of nitric oxide responsive genes in the floral buds of Litchi chinensis

S. Zhong, B. Zhou, W. Liu, 2014, Biologia Plantarum.

Chromatin and regulatory differentiation between bundle sheath and mesophyll cells in maize.

S. Zhong, Pinghua Li, Tiegang Lu, 2021, The Plant Journal.

SnRK2 subfamily I protein kinases regulate ethylene biosynthesis by phosphorylating HB transcription factors to induce ACO1 expression in apple

S. Zhong, W. Jia, Liping Liu, 2022, The New phytologist.

The transcriptome of the baculovirus Autographa californica Multiple 1 Nucleopolyhedrovirus ( AcMNPV ) in Trichoplusia ni cells 2 3 4

S. Zhong, Z. Fei, Jenny Z. Xiang, 2013 .

Improved plant transformation vectors for fluorescent protein tagging

S. Zhong, D. Grierson, R. Fray, 2008, Transgenic Research.

Characterization of Plant 3D Chromatin Architecture, In Situ Hi-C Library Preparation, and Data Analysis.

S. Zhong, Pengfei Dong, 2020, Methods in molecular biology.

Comparative genomic analyses reveal the genetic basis of the yellow-seed trait in Brassica napus

S. Zhong, F. Fu, X. Qiu, 2023, Nature communications.

Identification of Chilling Accumulation-Associated Genes for Litchi Flowering by Transcriptome-Based Genome-Wide Association Studies

H. Liu, S. Zhong, Peitao Lü, 2022, Frontiers in Plant Science.

Comparative WGBS identifies genes that influence non-ripe phenotype in tomato epimutant Colourless non-ripening

S. Zhong, Yiguo Hong, Xiaohong Wang, 2017, Science China Life Sciences.

Tomato MED25 regulates fruit ripening by interacting with EIN3-like transcription factors.

S. Zhong, Xianwen Meng, Chuanyou Li, 2022, The Plant cell.