S. Huang

发表

Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light

J. Ecker, J. Chory, Ullas V. Pedmale, 2016, Cell.

Integrating Proteomic, Transcriptional, and Interactome Data Reveals Hidden Components of Signaling and Regulatory Networks

E. Fraenkel, S. Huang, 2009, Science Signaling.

Integration of Proteomic, Transcriptional, and Interactome Data Reveals Hidden Signaling Components

E. Fraenkel, S. Huang, 2009 .

Swimming upstream: identifying proteomic signals that drive transcriptional changes using the interactome and multiple "-omics" datasets.

Ernest Fraenkel, Shao-shan Carol Huang, E. Fraenkel, 2012, Methods in cell biology.

Piecing together cis‐regulatory networks: insights from epigenomics studies in plants

J. Ecker, S. Huang, 2018, Wiley interdisciplinary reviews. Systems biology and medicine.

A transcription factor hierarchy defines an environmental stress response network

Ziv Bar-Joseph, Joseph R. Ecker, Aaron Wise, 2016, Science.

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape

Mathew G. Lewsey, R. O’Malley, J. Ecker, 2016, Cell.

Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions

Stefan R. Henz, Robert J. Schmitz, K. Borgwardt, 2016, Cell.

Mapping genome-wide transcription-factor binding sites using DAP-seq

R. O’Malley, J. Ecker, S. Huang, 2017, Nature Protocols.

Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem

C. Borgs, J. Chayes, R. Zecchina, 2012, J. Comput. Biol..

Big Data to the Bench: Transcriptome Analysis for Undergraduates

J. Chory, S. Huang, S. Morrison, 2019, CBE life sciences education.

Mapping transcription factor interactome networks using HaloTag protein arrays

David E Hill, Marc Vidal, Joshua LaBaer, 2016, Proceedings of the National Academy of Sciences.

Improving plant gene regulatory network inference by integrative analysis of multi-omics and high resolution data sets

S. Huang, Yichun Qian, 2020 .

Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis

Ziv Bar-Joseph, Bing Ren, Abdullah Jamali, 2013, eLife.

Response to Perspective

Robert J. Schmitz, J. Ecker, S. Briggs, 2013, Plant signaling & behavior.

Network modeling of kinase inhibitor polypharmacology reveals pathways targeted in chemical screens

E. Fraenkel, Yan Zhou, S. Huang, 2017, PloS one.

Elucidating the biology of transcription factor-DNA interaction for accurate identification of cis-regulatory elements.

S. Huang, M. Hajheidari, 2022, Current opinion in plant biology.

Processing and Subcellular Trafficking of ER-Tethered EIN2 Control Response to Ethylene Gas

Robert J. Schmitz, J. Ecker, S. Briggs, 2012, Science.

Vision, challenges and opportunities for a Plant Cell Atlas

Selena L Rice, Dae Kwan Ko, Elsa H Quezada-Rodríguez, 2021, eLife.

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape

Joseph R. Ecker, Mary Galli, Andrea Gallavotti, 2016, Cell.

Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem

Christian Borgs, Jennifer T. Chayes, Ernest Fraenkel, 2012, J. Comput. Biol..

Linking Proteomic and Transcriptional Data through the Interactome and Epigenome Reveals a Map of Oncogene-induced Signaling

Ernest Fraenkel, Douglas A. Lauffenburger, William Gordon, 2013, PLoS Comput. Biol..

Cannabinoid exposure in rat adolescence reprograms the initial behavioral, molecular, and epigenetic response to cocaine

E. Kandel, D. Kandel, S. Huang, 2020, Proceedings of the National Academy of Sciences.

Major orchestration of shikimate, early phenylpropanoid and stilbenoid pathways by Subgroup 2 R2R3-MYBs in grapevine

S. Huang, K. Gruden, D. Wong, 2021, bioRxiv.

Orchestration of the stilbene synthase gene family and their regulators by subgroup 2 MYB genes

S. Huang, K. Gruden, D. Wong, 2020 .

Erratum: Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape (Cell (2016) 165(5) (1280–1292))

Joseph R. Ecker, Mary Galli, Andrea Gallavotti, 2016 .

Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation

Dean Cheng, Raymond Lo, Geoffrey L. Winsor, 2004, Nucleic Acids Res..

Identification of Over-Represented Combinations of Transcription Factor Binding Sites in Sets of Co-Expressed Genes

Shannan J. Ho Sui, Debra L. Fulton, David J. Arenillas, 2005, APBC.

Transcription Factor Dynamics in Cross-Regulation of Plant Hormone Signaling Pathways

Natalie M. Clark, Mathew G. Lewsey, Z. Bar-Joseph, 2023, bioRxiv.

CrY2H-seq: a massively-multiplexed assay for deep coverage interactome mapping

Joseph R. Ecker, Mary Galli, Shao-shan Carol Huang, 2017, Nature Methods.

Direct regulation of shikimate, early phenylpropanoid and stilbenoid pathways by Subgroup 2 R2R3-MYBs in grapevine.

S. Huang, K. Gruden, D. Wong, 2022, The Plant journal : for cell and molecular biology.

Next Generation Protein Interactomes for Plant Systems Biology and Biomass Feedstock Research

R. O’Malley, J. Ecker, S. Huang, 2016 .

Double DAP-seq uncovered synergistic DNA binding of interacting bZIP transcription factors

S. Huang, M. Galli, Jin‐Gui Chen, 2023, Nature communications.

Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem

C. Borgs, J. Chayes, R. Zecchina, 2012, J. Comput. Biol..

CrY2H-seq: a massively-multiplexed assay for deep coverage interactome mapping

J. Ecker, S. Huang, Joseph R. Nery, 2017, Nature Methods.

SteinerNet: a web server for integrating ‘omic’ data to discover hidden components of response pathways

Ernest Fraenkel, Nurcan Tuncbag, Scott McCallum, 2012, Nucleic Acids Res..

SteinerNet: a web server for integrating ‘omic’ data to discover hidden components of response pathways

E. Fraenkel, S. Huang, Nurcan Tuncbag, 2012, Nucleic Acids Res..