T. Yamane

发表

A new simulated annealing method combined with a polarizable continuum model based on the boundary element method

T. Yamane, Y. Inoue, M. Sakurai, 1998 .

Water‐mediated interactions between DNA and PhoB DNA‐binding/transactivation domain: NMR‐restrained molecular dynamics in explicit water environment

A. Kidera, T. Yamane, M. Ikeguchi, 2008, Proteins.

Energetics and conformational pathways of functional rotation in the multidrug transporter AcrB

A. Kidera, T. Yamane, K. Moritsugu, 2017, bioRxiv.

Energetics and Conformational Pathways of Functional Rotation in the Multidrug Transporter AcrB

A. Kidera, T. Yamane, K. Moritsugu, 2017, bioRxiv.

Functional rotation induced by alternating protonation states in the multidrug transporter AcrB: all-atom molecular dynamics simulations.

T. Yamane, M. Ikeguchi, S. Murakami, 2013, Biochemistry.

Side-chain conformational changes of transcription factor PhoB upon DNA binding: a population-shift mechanism.

A. Kidera, T. Yamane, M. Ikeguchi, 2010, Journal of the American Chemical Society.

Structure and Functional Characterization of Vibrio parahaemolyticus Thermostable Direct Hemolysin*

T. Ikegami, T. Yamane, M. Ikeguchi, 2010, The Journal of Biological Chemistry.

Structure and Function of Thermostable Direct Hemolysin (TDH) from Vibrio Parahaemolyticus

T. Yamane, M. Ikeguchi, H. Hashimoto, 2010 .

Codon-anticodon binding in tRNAphe.

J. Eisinger, T. Yamane, B. Feuer, 1971, Nature: New biology.

Heterogeneous structure of silk fibers from Bombyx mori resolved by 13C solid-state NMR spectroscopy.

T. Yamane, T. Asakura, Juming Yao, 2002, Journal of the American Chemical Society.

Molecular Mechanism of Multi-drug Efflux Transporter, AcrB Revealed by the Synergy between Molecular Dynamics Simulation and Crystallography

S. Takada, T. Yamane, M. Ikeguchi, 2015 .

Supramolecular Mechanosensitive Potassium Channel Formed by Fluorinated Amphiphilic Cyclophane.

T. Yamane, M. Ikeguchi, H. Noji, 2022, Journal of the American Chemical Society.

Hybrid in vitro/in silico analysis of low‐affinity protein–protein interactions that regulate signal transduction by Sema6D

T. Yamane, M. Ikeguchi, S. Akashi, 2022, Protein science : a publication of the Protein Society.

Conformation Control of Peptides by Metal Ions. Coordination Conformation Correlation Observed in a Model for Cys-X-Y-Cys/M(2+) in Proteins.

T. Yamane, H. Hirota, Tsutomu Watanabe, 1997, Inorganic chemistry.

Conformation Control of Model Peptides by Metal Ions. A New Type of Turn Structure Found in [(Boc-Cys-Pro-Leu-Cys-Gly-Ala)Hg]

T. Yamane, H. Hirota, Masaya Arai, 1996 .

A repeated beta-turn structure in poly(Ala-Gly) as a model for silk I of Bombyx mori silk fibroin studied with two-dimensional spin-diffusion NMR under off magic angle spinning and rotational echo double resonance.

T. Yamane, K. Ohgo, T. Asakura, 2001, Journal of molecular biology.

Luminescence and binding studies on tRNA-Phe.

J. Eisinger, T. Yamane, B. Feuer, 1970, Proceedings of the National Academy of Sciences of the United States of America.

Ionic scattering factors of atoms that compose biological molecules

Mitsunori Ikeguchi, Akinori Kidera, Koji Yonekura, 2018, IUCrJ.

Structure of the Small Ubiquitin-like Modifier (SUMO)-interacting Motif of MBD1-containing Chromatin-associated Factor 1 Bound to SUMO-3*

T. Ikegami, M. Shirakawa, T. Yamane, 2008, Journal of Biological Chemistry.

Solution structure of the isolated histone H2A-H2B heterodimer

T. Yamane, M. Ikeguchi, Y. Nishimura, 2016, Scientific Reports.

Determination of intermolecular distance for a model peptide of Bombyx mori silk fibroin, GAGAG, with rotational echo double resonance.

T. Yamane, T. Asakura, T. Kameda, 2002, Biopolymers.

Structure ofBombyx mori silk fibroin before spinning in solid state studied with wide angle x-ray scattering and13C cross-polarization/magic angle spinning NMR

T. Yamane, T. Asakura, T. Kameda, 2001 .

Structure of Bombyx mori silk fibroin before spinning in solid state studied with wide angle x-ray scattering and (13)C cross-polarization/magic angle spinning NMR.

T. Yamane, T. Asakura, T. Kameda, 2001, Biopolymers.

Structure ofBombyx moriSilk Fibroin before Spinning in Silkworm

T. Yamane, T. Asakura, J. Ashida, 2002 .

The Structural Characteristics of Bombyx mori Silk Fibroin before Spinning As Studied with Molecular Dynamics Simulation

T. Yamane, T. Asakura, A. Umemura, 2002 .

Molecular Dynamics Simulation of Conformational Change of Poly(Ala-Gly) from Silk I to Silk ΙΙ in Relation to Fiber Formation Mechanism of Bombyx mori Silk Fibroin

T. Yamane, T. Asakura, Y. Nakazawa, 2003 .

Elimination of Finite-Size Effects on Binding Free Energies via the Warp-Drive Method.

T. Yamane, M. Ikeguchi, Toru Ekimoto, 2018, Journal of chemical theory and computation.

Amplitude of rippling in the P beta phase of dipalmitoylphosphatidylcholine bilayers.

T. Yamane, H. Guggenheim, J. Stamatoff, 1982, Biophysical journal.

3D-RISM-AI: A Machine Learning Approach to Predict Protein–Ligand Binding Affinity Using 3D-RISM

T. Yamane, M. Ikeguchi, Toru Ekimoto, 2022, The journal of physical chemistry. B.

Identification of changes in the microflora composition of Japanese horse mackerel (Trachurus japonicus) during storage to identify specific spoilageorganisms

T. Kawarai, H. Ogihara, T. Yamane, 2022, Current Research in Food Science.

Uniaxial alignment of the smallest diamagnetic susceptibility axis using time-dependent magnetic fields.

T. Yamane, M. Yamato, Tsunehisa Kimura, 2004, Langmuir : the ACS journal of surfaces and colloids.

Dynamic solution structures of whole human NAP1 dimer bound to one and two histone H2A-H2B heterodimers obtained by integrative methods.

N. Kodera, T. Yamane, M. Ikeguchi, 2023, Journal of molecular biology.