Ting-Yi Sung

发表

Integrating linguistic knowledge into a conditional random fieldframework to identify biomedical named entities

Shih-Hung Wu, Wen-Lian Hsu, Richard Tzong-Han Tsai, 2006, Expert systems with applications.

MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identification

Wen-Lian Hsu, Ting-Yi Sung, Wai-Kok Choong, 2016, Nucleic Acids Res..

MAGIC: an automated N-linked glycoprotein identification tool using a Y1-ion pattern matching algorithm and in silico MS² approach.

Chen-Chun Chen, Wan-Chih Su, W. Hsu, 2015, Analytical chemistry.

BIOSMILE: Adapting Semantic Role Labeling for Biomedical Verbs:

Wen-Lian Hsu, Richard Tzong-Han Tsai, Ting-Yi Sung, 2006, BioNLP@NAACL-HLT.

A Maximum Entropy Approach to Biomedical Named Entity Recognition

Wen-Lian Hsu, Richard Tzong-Han Tsai, Ting-Yi Sung, 2004, BIOKDD.

Automated Generic Analysis Tools for Protein Quantitation Using Stable Isotope Labeling

Wen-Lian Hsu, Ting-Yi Sung, W. Hsu, 2010, Proteome Bioinformatics.

PROTEIN SUBCELLULAR LOCALIZATION PREDICTION BASED ON COMPARTMENT-SPECIFIC BIOLOGICAL FEATURES

Wen-Lian Hsu, Ting-Yi Sung, Allan Lo, 2006 .

IDEAL-Q, an Automated Tool for Label-free Quantitation Analysis Using an Efficient Peptide Alignment Approach and Spectral Data Validation*

Chih-Chiang Tsou, W. Hsu, Ting-Yi Sung, 2009, Molecular & Cellular Proteomics.

Phosphoproteomics Identifies Oncogenic Ras Signaling Targets and Their Involvement in Lung Adenocarcinomas

W. Hsu, Ting-Yi Sung, Yu‐Ju Chen, 2011, PloS one.

Finding the most vital edges with respect to the number of spanning trees

Ting-Yi Sung, W. Myrvold, Lih-Hsing Hsu, 1994 .

Informatics View on the Challenges of Identifying Missing Proteins from Shotgun Proteomics.

W. Hsu, Ting-Yi Sung, Wai-Kok Choong, 2015, Journal of proteome research.

Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project.

Juan Antonio Vizcaíno, Yassene Mohammed, Ekaterina Mostovenko, 2015, Journal of proteome research.

ON THE ACCURACY OF TRANSMEMBRANE HELIX PREDICTION METHODS USING AN UPDATED BENCHMARK

W. Hsu, Ting-Yi Sung, Allan Lo, 2007 .

Chromosome-centric Human Proteome Project (C-HPP): Chromosome 12.

Henry H. N. Lam, A. Pandey, R. Sirdeshmukh, 2014, Journal of proteome research.

Decoding the disease-associated proteins encoded in the human chromosome 4.

W. Hsu, Ting-Yi Sung, Wai-Kok Choong, 2013, Journal of proteome research.

Evaluating the Possibility of Detecting Variants in Shotgun Proteomics via LeTE-Fusion Analysis Pipeline.

Ting-Yi Sung, Wai-Kok Choong, Yu-Ju Chen, 2018, Journal of proteome research.

Identification of Essential Residues from Protein Secondary Structure Prediction and Applications

W. Hsu, Ting-Yi Sung, Hsin-Nan Lin, 2011 .

Computational Comparative Study of Tuberculosis Proteomes Using a Model Learned from Signal Peptide Structures

W. Hsu, Ting-Yi Sung, Cheng-Wei Cheng, 2012, PloS one.

iTop-Q: an Intelligent Tool for Top-down Proteomics Quantitation Using DYAMOND Algorithm.

W. Hsu, Ting-Yi Sung, Ching-Tai Chen, 2017, Analytical chemistry.

Changing the Diameter in Kronecker Product of Cycles

Ting-Yi Sung, Jeng-Jung Wang, T. Ho, 2008 .

TMPad: an integrated structural database for helix-packing folds in transmembrane proteins

Wen-Lian Hsu, Ting-Yi Sung, Allan Lo, 2010, Nucleic Acids Res..

Efficient and Interpretable Prediction of Protein Functional Classes by Correspondence Analysis and Compact Set Relations

C. Tang, C. Notredame, W. Hsu, 2013, PloS one.

Extended Tree Contraction for Some parallel Algorithms on Series-Parallel Networks

Lih-Hsing Hsu, Ting-Yi Sung, Jeng-Jung Wang, 1997, J. Inf. Sci. Eng..

iMet-Q: A User-Friendly Tool for Label-Free Metabolomics Quantitation Using Dynamic Peak-Width Determination

W. Hsu, Ting-Yi Sung, T. M. Lih, 2016, PloS one.

Multiaspect Examinations of Possible Alternative Mappings of Identified Variant Peptides: A Case Study on the HEK293 Cell Line

Ting-Yi Sung, Wai-Kok Choong, 2022, ACS omega.

iHPDM: in silico human proteome digestion map with proteolytic peptide analysis and graphical visualizations.

Ting-Yi Sung, Wai-Kok Choong, Ching-Tai Chen, 2019, Journal of proteome research.

Proteogenomics of Non-smoking Lung Cancer in East Asia Delineates Molecular Signatures of Pathogenesis and Progression

I. Jonassen, Yi-Ju Chen, Yih-Leong Chang, 2020, Cell.

Phosphoproteomics Reveals HMGA1, a CK2 Substrate, as a Drug-Resistant Target in Non-Small Cell Lung Cancer

Ting-Yi Sung, Wai-Kok Choong, Yu‐Ju Chen, 2017, Scientific Reports.

Protein subcellular localization prediction of eukaryotes using a knowledge-based approach

Wen-Lian Hsu, Shinn-Ying Ho, Ting-Yi Sung, 2009 .

PSLDoc: Protein subcellular localization prediction based on gapped‐dipeptides and probabilistic latent semantic analysis

Wen-Lian Hsu, Emily Chia-Yu Su, Ting-Yi Sung, 2008, Proteins.

Label-free Quantitative Proteomics and N-Glycoproteomics Analysis of KRAS-activated Human Bronchial Epithelial Cells*

Chih-Chiang Tsou, Ting-Yi Sung, Chung-Hsuan Chen, 2012, Molecular & Cellular Proteomics.

Improving the Alignment Quality of Consistency Based Aligners with an Evaluation Function Using Synonymous Protein Words

Wen-Lian Hsu, Ting-Yi Sung, Cédric Notredame, 2011, PloS one.

Decoding the Effect of Isobaric Substitutions on Identifying Missing Proteins and Variant Peptides in Human Proteome.

Ting-Yi Sung, Wai-Kok Choong, Yu-Ju Chen, 2017, Journal of proteome research.

Sequential phosphoproteomic enrichment through complementary metal-directed immobilized metal ion affinity chromatography.

Ting-Yi Sung, Wai-Kok Choong, Yu-Ju Chen, 2014, Analytical chemistry.

Subcellular Proteome Landscape of Human Embryonic Stem Cells Revealed Missing Membrane Proteins.

Reta Birhanu Kitata, Ting-Yi Sung, Wai-Kok Choong, 2018, Journal of proteome research.

Enhanced membrane protein topology prediction using a hierarchical classification method and a new scoring function.

Wen-Lian Hsu, Ting-Yi Sung, Allan Lo, 2008, Journal of proteome research.

An informatics-assisted label-free quantitation strategy that depicts phosphoproteomic profiles in lung cancer cell invasion.

Wen-Lian Hsu, Ting-Yi Sung, Yu-Ju Chen, 2010, Journal of proteome research.

Routing and Transmitting Problems in de Bruijn Networks

Zhen Liu, Ting-Yi Sung, Z. Liu, 1996, IEEE Trans. Computers.

Transmitting on various network topologies

Ting-Yi Sung, Lih-Hsing Hsu, T. Ho, 1996, Networks.

MinProtMaxVP: Generating a minimized number of protein variant sequences containing all possible variant peptides for proteogenomic analysis.

Ting-Yi Sung, Wai-Kok Choong, Jen-Hung Wang, 2020, Journal of proteomics.

Rapid High-pH Reverse Phase StageTip for Sensitive Small-Scale Membrane Proteomic Profiling.

Reta Birhanu Kitata, Ting-Yi Sung, Wai-Kok Choong, 2015, Analytical chemistry.

Detection of the inferred interaction network in hepatocellular carcinoma from EHCO (Encyclopedia of Hepatocellular Carcinoma genes Online)

Chia-Hung Liu, Cheng-Yan Kao, Chi-Ying F. Huang, 2007, BMC Bioinformatics.

Protein subcellular localization prediction based on compartment-specific features and structure conservation

Wen-Lian Hsu, Emily Chia-Yu Su, Ting-Yi Sung, 2007, BMC Bioinformatics.

Phosphoproteomic analysis of human mesenchymal stromal cells during osteogenic differentiation.

O. Lee, W. Hsu, Ting-Yi Sung, 2012, Journal of Proteome Research.

Calibr improves spectral library search for spectrum-centric analysis of data independent acquisition proteomics

Ting-Yi Sung, Wai-Kok Choong, Ching-Tai Chen, 2022, Scientific Reports.

Multi-Q 2 software facilitates isobaric labeling quantitation analysis with improved accuracy and coverage

Ting-Yi Sung, Wai-Kok Choong, Cheng-Wei Cheng, 2021, Scientific Reports.

Comparison of different variant sequence types coupled with decoy generation methods used in concatenated target-decoy database searches for proteogenomic research.

Ting-Yi Sung, Wai-Kok Choong, Ting-Yi Sung, 2020, Journal of proteomics.

WinProphet: a user-friendly pipeline management system for proteomics data analysis based on Trans-Proteomic Pipeline.

W. Hsu, Ting-Yi Sung, Wai-Kok Choong, 2019, Analytical chemistry.

Mining Missing Membrane Proteins by High-pH Reverse-Phase StageTip Fractionation and Multiple Reaction Monitoring Mass Spectrometry.

Alexey I Nesvizhskii, Ting-Yi Sung, Wai-Kok Choong, 2015, Journal of proteome research.

N-GlyDE: a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encoding

Ting-Yi Sung, Wen-Lian Hsu, Wai-Kok Choong, 2019, Scientific Reports.

NERBio: using selected word conjunctions, term normalization, and global patterns to improve biomedical named entity recognition

Wen-Lian Hsu, Richard Tzong-Han Tsai, Ting-Yi Sung, 2006, BMC Bioinformatics.

A data-independent acquisition-based global phosphoproteomics system enables deep profiling

Reta Birhanu Kitata, A. Nesvizhskii, Ting-Yi Sung, 2021, Nature Communications.

Hyplosp: a Knowledge-based Approach to Protein Local Structure Prediction

Wen-Lian Hsu, Ting-Yi Sung, Ching-Tai Chen, 2006, J. Bioinform. Comput. Biol..

A Knowledge-Based Approach to Protein Local Structure Prediction

Wen-Lian Hsu, Ting-Yi Sung, Kuen-Pin Wu, 2005, APBC.

Spectrum-based method to generate good decoy libraries for spectral library searching in peptide identifications.

Wen-Lian Hsu, Ting-Yi Sung, Yu-Ju Chen, 2013, Journal of proteome research.

Improving protein secondary structure prediction based on short subsequences with local structure similarity

W. Hsu, Ting-Yi Sung, Hsin-Nan Lin, 2010, BMC Genomics.

Edge Congestion and Topological Properties of Crossed Cubes

Lih-Hsing Hsu, Ting-Yi Sung, Chien-Ping Chang, 2000, IEEE Trans. Parallel Distributed Syst..

Metabolite identification for mass spectrometry-based metabolomics using multiple types of correlated ion information.

Wen-Lian Hsu, Ting-Yi Sung, Yet-Ran Chen, 2015, Analytical chemistry.

Multi-Q: a fully automated tool for multiplexed protein quantitation.

Wen-Lian Hsu, Ting-Yi Sung, Kun-Pin Wu, 2006, Journal of proteome research.

Predicting RNA-binding sites of proteins using support vector machines and evolutionary information

Wen-Lian Hsu, Emily Chia-Yu Su, Ting-Yi Sung, 2008, BMC Bioinformatics.

The shuffle-cubes and their generalization

Jimmy J. M. Tan, Lih-Hsing Hsu, Ting-Yi Sung, 2001, Inf. Process. Lett..

UniLoc: A universal protein localization site predictor for eukaryotes and prokaryotes

Ting-Yi Sung, Ching-Tai Chen, Hsin-Nan Lin, 2018, bioRxiv.

An analytic symmetrization of max flow-min cut

Manfred W. Padberg, Ting-Yi Sung, M. Padberg, 1997, Discret. Math..

Various criteria in the evaluation of biomedical named entity recognition

Shih-Hung Wu, Wen-Lian Hsu, Richard Tzong-Han Tsai, 2006, BMC Bioinformatics.

HYPROSP II-A knowledge-based hybrid method for protein secondary structure prediction based on local prediction confidence

Wen-Lian Hsu, Ting-Yi Sung, Kuen-Pin Wu, 2005, Bioinform..

An analytical comparison of different formulations of the travelling salesman problem

Ting-Yi Sung, Manfred W. Padberg, M. Padberg, 1991, Math. Program..

Protein subcellular localization prediction based on compartment-specific features and structure conservation

Jenn-Kang Hwang, W. Hsu, Ting-Yi Sung, 2007, BMC Bioinformatics.

Protein subcellular localization prediction of eukaryotes using a knowledge-based approach

W. Hsu, Ting-Yi Sung, Hsin-Nan Lin, 2009 .

Prediction of nuclear proteins using nuclear translocation signals proposed by probabilistic latent semantic indexing

Wen-Lian Hsu, Emily Chia-Yu Su, Ting-Yi Sung, 2012, BMC Bioinformatics.

A polynomial-time solution to Papadimitriou and Steiglitz's 'traps'

Ting-Yi Sung, Manfred W. Padberg, M. Padberg, 1988 .

Predicting helix–helix interactions from residue contacts in membrane proteins

Wen-Lian Hsu, Ting-Yi Sung, Ping-Chiang Lyu, 2009, Bioinform..

HYPROSP: a hybrid protein secondary structure prediction algorithm--a knowledge-based approach.

Wen-Lian Hsu, Ting-Yi Sung, Kuen-Pin Wu, 2004, Nucleic acids research.

Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project.

Cheryl F. Lichti, S. Ranganathan, Y. Guan, 2015, Journal of proteome research.

Improving protein secondary structure prediction based on short subsequences with local structure similarity

W. Hsu, Ting-Yi Sung, Hsin-Nan Lin, 2010, BMC Genomics.

IARC on tamoxifen.

W. Hsu, Ting-Yi Sung, Yin-Hao Tsui, 1996, Nucleic Acids Res..

RIBRA - An Error-Tolerant Algorithm for the NMR Backbone Assignment Problem

Wen-Lian Hsu, Ting-Yi Sung, Kuen-Pin Wu, 2006, J. Comput. Biol..

GANA—a genetic algorithm for NMR backbone resonance assignment

Wen-Lian Hsu, Ting-Yi Sung, Kuen-Pin Wu, 2005, 2005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05).

RIBRA-An Error-Tolerant Algorithm for the NMR Backbone Assignment Problem

Wen-Lian Hsu, Ting-Yi Sung, Kuen-Pin Wu, 2005, RECOMB.

BIOSMILE: A semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features

Wen-Lian Hsu, Richard Tzong-Han Tsai, Ting-Yi Sung, 2007, BMC Bioinformatics.

Fault Tolerant Token Ring Embedding in Double Loop Networks

Lih-Hsing Hsu, Chun-Yuan Lin, Ting-Yi Sung, 1998, Inf. Process. Lett..

A Semi-Automatic Method for Annotating a Biomedical Proposition Bank

Wen-Lian Hsu, Richard Tzong-Han Tsai, Ting-Yi Sung, 2006 .

Christmas Tree: A Versatile 1-Fault-Tolerant Design for Token Rings

Lih-Hsing Hsu, Ting-Yi Sung, Chun-Nan Hung, 1999, Inf. Process. Lett..

Christmas tree: a 1-fault-tolerant network for token rings

Lih-Hsing Hsu, Ting-Yi Sung, Chun-Nan Hung, 1998, Proceedings 1998 International Conference on Parallel and Distributed Systems (Cat. No.98TB100250).

Enhance Genomic IR with Term Variation and Expansion: Experience of the IASL Group at Genomic Track 2005

Yu-Chun Wang, Wen-Lian Hsu, Ting-Yi Sung, 2005, TREC.

IDEAL-Q, an Automated Tool for Label-free Quantitation Analysis Using an Efficient Peptide Alignment Approach and Spectral Data Validation*

Chih-Chiang Tsou, W. Hsu, Ting-Yi Sung, 2009, Molecular & Cellular Proteomics.