C. Mattingly

发表

The Comparative Toxicogenomics Database (CTD): a resource for comparative toxicological studies.

Michael C. Rosenstein, C. Mattingly, M. Rosenstein, 2006, Journal of experimental zoology. Part A, Comparative experimental biology.

Chemical-Induced Phenotypes at CTD Help Inform the Predisease State and Construct Adverse Outcome Pathways

Thomas C. Wiegers, Cynthia J. Grondin, Robin J. Johnson, 2018, Toxicological sciences : an official journal of the Society of Toxicology.

Providing the Missing Link: the Exposure Science Ontology ExO

J. Blake, C. Mattingly, T. McKone, 2012, Environmental science & technology.

The Comparative Toxicogenomics Database: update 2017

Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly, 2016, Nucleic Acids Res..

Laying a Community-Based Foundation for Data-Driven Semantic Standards in Environmental Health Sciences

Rebecca R. Boyles, C. Mattingly, M. Haendel, 2016, Environmental health perspectives.

Ranking Transitive Chemical-Disease Inferences Using Local Network Topology in the Comparative Toxicogenomics Database

Thomas C. Wiegers, Michael C. Rosenstein, A. P. Davis, 2012, PloS one.

Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicogenomics Database

Thomas C. Wiegers, David M. Reif, Cynthia J. Grondin, 2016, Environmental health perspectives.

The comparative toxicogenomics database: a cross-species resource for building chemical-gene interaction networks.

Michael C. Rosenstein, A. P. Davis, C. Mattingly, 2006, Toxicological sciences : an official journal of the Society of Toxicology.

Chemical databases for environmental health and clinical research.

C. Mattingly, 2009, Toxicology letters.

Generating Gene Ontology-Disease Inferences to Explore Mechanisms of Human Disease at the Comparative Toxicogenomics Database

Thomas C. Wiegers, Cynthia J. Grondin, Robin J. Johnson, 2016, PloS one.

The Comparative Toxicogenomics Database facilitates identification and understanding of chemical-gene-disease associations: arsenic as a case study

Thomas C. Wiegers, Michael C. Rosenstein, Cynthia G. Murphy, 2008, BMC Medical Genomics.

Text Mining Effectively Scores and Ranks the Literature for Improving Chemical-Gene-Disease Curation at the Comparative Toxicogenomics Database

Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly, 2013, PloS one.

Accessing an Expanded Exposure Science Module at the Comparative Toxicogenomics Database

Thomas C. Wiegers, Cynthia J. Grondin, A. P. Davis, 2018, Environmental health perspectives.

Informatics and Data Analytics to Support Exposome-Based Discovery for Public Health.

Molly A. Hall, D. Wishart, P. Bushel, 2017, Annual review of public health.

An Evaluation of Information Content as a Metric for the Inference of Putative Conserved Noncoding Regions in DNA Sequences Using a Genetic Algorithms Approach

Joseph C. Aman, C. Mattingly, C. Congdon, 2008, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

It's not junk!: the search for functional elements in noncoding DNA

C. Mattingly, C. Congdon, H. Gaskins, 2008, SEVO.

The Comparative Toxicogenomics Database (CTD).

C. Mattingly, G. Colby, J. Forrest, 2003, Environmental health perspectives.

Annotating chemicals , diseases and their interactions in biomedical literature

Zhiyong Lu, Thomas C. Wiegers, Allan Peter Davis, 2015 .

Perturbation of Defense Pathways by Low-Dose Arsenic Exposure in Zebrafish Embryos

Carolyn J. Mattingly, Antonio Planchart, C. Mattingly, 2009, Environmental health perspectives.

Applying evolutionary genetics to developmental toxicology and risk assessment.

R. DeSalle, M. Siddall, C. Mattingly, 2017, Reproductive toxicology.

Estrogen Receptor Reduces CYP1A1 Induction in Cultured Human Endometrial Cells*

C. Mattingly, W. A. Toscano, M. Ricci, 1999, The Journal of Biological Chemistry.

Leveraging the Comparative Toxicogenomics Database to fill in knowledge gaps for environmental health: a test case for air pollution-induced cardiovascular disease.

Thomas C. Wiegers, Cynthia J. Grondin, Robin J. Johnson, 2020, Toxicological sciences : an official journal of the Society of Toxicology.

Beyond the looking glass: recent advances in understanding the impact of environmental exposures on neuropsychiatric disease

E. Levin, T. Guilarte, C. Ladd-Acosta, 2020, Neuropsychopharmacology.

Disease model curation improvements at Mouse Genome Informatics

Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly, 2012, Database J. Biol. Databases Curation.

Green fluorescent protein (GFP) as a marker of aryl hydrocarbon receptor (AhR) function in developing zebrafish (Danio rerio).

C. Mattingly, J. McLachlan, W. A. Toscano, 2001, Environmental health perspectives.

Posttranscriptional silencing of cytochrome P4501A1 (CYP1A1) during zebrafish (Danio rerio) development

C. Mattingly, W. A. Toscano, William A. Toscano, 2001, Developmental dynamics : an official publication of the American Association of Anatomists.

An Evaluation of Information Content as a Metric for the Inference of Putative Conserved Noncoding Regions in DNA Sequences Using a Genetic Algorithms Approach

Carolyn J. Mattingly, Clare Bates Congdon, H. Rex Gaskins, 2008, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Marine Organism Cell Biology and Regulatory Sequence Discoveryin Comparative Functional Genomics

C. Mattingly, J. Forrest, C. Bayne, 2004, Cytotechnology.

Cadmium Disrupts Vestibular Function by Interfering with Otolith Formation

Adrian J. Green, C. Mattingly, A. Planchart, 2017, bioRxiv.

Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical–gene–disease networks

Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly, 2008, Nucleic Acids Res..

From the Cover: Embryonic Exposure to TCDD Impacts Osteogenesis of the Axial Skeleton in Japanese medaka, Oryzias latipes

David M. Reif, C. Mattingly, D. Reif, 2017, Toxicological sciences : an official journal of the Society of Toxicology.

The Comparative Toxicogenomics Database: update 2013

Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly, 2012, Nucleic Acids Res..

The Comparative Toxicogenomics Database's 10th year anniversary: update 2015

Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly, 2014, Nucleic Acids Res..

MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database

Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly, 2012, Database J. Biol. Databases Curation.

The Comparative Toxicogenomics Database: update 2019

Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly, 2018, Nucleic Acids Res..

Towards Interactive Visualization for Exploring Conserved Motifs in Noncoding DNA Sequence

Carolyn J. Mattingly, Clare Bates Congdon, H. Rex Gaskins, 2007, 2007 Frontiers in the Convergence of Bioscience and Information Technologies.

Preliminary Results for GAMI: A Genetic Algorithms Approach to Motif Inference

Carolyn J. Mattingly, Clare Bates Congdon, Charles Fizer, 2005, 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology.

Comparative Toxicogenomics Database (CTD): update 2021

Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly, 2020, Nucleic Acids Res..

The Comparative Toxicogenomics Database: update 2011

Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly, 2010, Nucleic Acids Res..

Cell and molecular biology of marine elasmobranchs: Squalus acanthias and Raja erinacea.

C. Mattingly, L. Dowell, D. Barnes, 2004, Zebrafish.

Genetic and environmental pathways to complex diseases

Allan Peter Davis, Carolyn J. Mattingly, Julia M. Gohlke, 2009, BMC Systems Biology.

BioCreative V CDR task corpus: a resource for chemical disease relation extraction

Zhiyong Lu, Thomas C. Wiegers, Allan Peter Davis, 2016, Database J. Biol. Databases Curation.

Advancing Toxicology Research Using In Vivo High Throughput Toxicology with Small Fish Models

Carolyn J. Mattingly, David M. Reif, David Allen, 2016, ALTEX.

Comparative Toxicogenomics Database (CTD): update 2023

Thomas C. Wiegers, Robin J. Johnson, A. P. Davis, 2022, Nucleic Acids Res..

Cadmium exposure and MEG3 methylation differences between Whites and African Americans in the NEST Cohort

Jonathan R. Hall, Eric S. Money, J. Tzeng, 2019, Environmental epigenetics.

Cadmium Exposure Increases the Risk of Juvenile Obesity: A Human and Zebrafish Comparative Study

Adrian J. Green, J. Tzeng, S. Murphy, 2017, bioRxiv.

Heavy Metal Exposure and Metabolic Syndrome: Evidence from Human and Model System Studies

Adrian J. Green, C. Mattingly, C. Hoyo, 2018, Current Environmental Health Reports.

Aquatic models, genomics and chemical risk management.

Antonio Planchart, Carolyn J Mattingly, C. Mattingly, 2012, Comparative biochemistry and physiology. Toxicology & pharmacology : CBP.

2,3,7,8-Tetrachlorodibenzo-p-dioxin upregulates FoxQ1b in zebrafish jaw primordium.

C. Mattingly, A. Planchart, 2010, Chemical research in toxicology.

GeneComps and ChemComps: a new CTD metric to identify genes and chemicals with shared toxicogenomic profiles

Thomas C. Wiegers, Allan Peter Davis, Cynthia G. Murphy, 2009, Bioinformation.

Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD)

K. Bretonnel Cohen, Thomas C. Wiegers, Allan Peter Davis, 2009, BMC Bioinformatics.

ToxEvaluator: an integrated computational platform to aid the interpretation of toxicology study-related findings

Thomas C. Wiegers, Carolyn J. Mattingly, D. Pelletier, 2016, Database J. Biol. Databases Curation.

Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task

Yifan Peng, Zhiyong Lu, Thomas C. Wiegers, 2016, Database J. Biol. Databases Curation.

Predicting molecular mechanisms, pathways, and health outcomes induced by Juul e-cigarette aerosol chemicals using the Comparative Toxicogenomics Database

Thomas C. Wiegers, Cynthia J. Grondin, Robin J. Johnson, 2021, Current Research in Toxicology.

2 , 3 , 7 , 8-Tetrachlorodibenzo-p-dioxin Upregulates FoxQ 1 b in Zebrafish Jaw

C. Mattingly, Primordium Antonio Planchart, 2010 .

BioCreative-2012 Virtual Issue

Zhiyong Lu, K. Bretonnel Cohen, Alfonso Valencia, 2012, Database J. Biol. Databases Curation.

Collaborative biocuration—text-mining development task for document prioritization for curation

Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly, 2012, Database J. Biol. Databases Curation.

Public data sources to support systems toxicology applications.

Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly, 2019, Current opinion in toxicology.

Heavy Metal Exposure and Metabolic Syndrome: Evidence from Human and Model System Studies

Adrian J. Green, C. Mattingly, C. Hoyo, 2018, Current Environmental Health Reports.

DiseaseComps: a metric that discovers similar diseases based upon common toxicogenomic profiles at CTD

Thomas C. Wiegers, Allan Peter Davis, Michael C Rosenstein, 2011, Bioinformation.

Regulatory status of pesticide residues in cannabis: Implications to medical use in neurological diseases

Thomas C. Wiegers, A. P. Davis, C. Mattingly, 2021, Current research in toxicology.

CTD anatomy: Analyzing chemical-induced phenotypes and exposures from an anatomical perspective, with implications for environmental health studies

Thomas C. Wiegers, Cynthia J. Grondin, Robin J. Johnson, 2021, Current research in toxicology.

Developmental Cadmium Exposure Disrupts Zebrafish Vestibular Calcium Channels Interfering with Otolith Formation and Inner Ear Function.

Adrian J. Green, C. Mattingly, K. Marsden, 2023, Neurotoxicology.

Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database

Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly, 2012, Database J. Biol. Databases Curation.

The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database

Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly, 2011, Database J. Biol. Databases Curation.

Web services-based text-mining demonstrates broad impacts for interoperability and process simplification

Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly, 2014, Database J. Biol. Databases Curation.

Integration of curated and high-throughput screening data to elucidate environmental influences on disease pathways

Carolyn J. Mattingly, Skylar W. Marvel, David M. Reif, 2019, Computational toxicology.

Cadmium Exposure Increases the Risk of Juvenile Obesity: A Human and Zebrafish Comparative Study

Adrian J. Green, S. Murphy, C. Mattingly, 2018, International Journal of Obesity.

Cadmium Exposure Increases the Risk of Juvenile Obesity: A Human and Zebrafish Comparative Study

Adrian J. Green, C. Mattingly, C. Hoyo, 2017, bioRxiv.

A CTD–Pfizer collaboration: manual curation of 88 000 scientific articles text mined for drug–disease and drug–phenotype interactions

Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly, 2013, Database J. Biol. Databases Curation.

The Comparative Toxicogenomics Database's 10th year anniversary: update 2015

Thomas C. Wiegers, Cynthia A. Saraceni-Richards, Cynthia J. Grondin, 2014, Nucleic Acids Res..

BioC interoperability track overview

Yifan Peng, Zhiyong Lu, Karin M. Verspoor, 2014, Database J. Biol. Databases Curation.

CTD Tetramers: a new online tool that computationally links curated chemicals, genes, phenotypes, and diseases to inform molecular mechanisms for environmental health.

Thomas C. Wiegers, Robin J. Johnson, A. P. Davis, 2023, Toxicological sciences : an official journal of the Society of Toxicology.