D. Petrey

发表

Structure-based prediction of protein-protein interactions on a genome-wide scale

B. Honig, A. Califano, T. Maniatis, 2012, Nature.

Predicting transmembrane beta-barrels in proteomes.

Henry R. Bigelow, B. Rost, Dariusz Przybylski, 2004, Nucleic acids research.

A hybrid method for protein–protein interface prediction

B. Honig, D. Petrey, Howook Hwang, 2016, Protein science : a publication of the Protein Society.

Protein structure prediction: inroads to biology.

B. Honig, D. Petrey, Donald Petrey, 2005, Molecular cell.

Protein structure comparison: implications for the nature of 'fold space', and structure and function prediction.

R. Kolodny, B. Honig, D. Petrey, 2006, Current opinion in structural biology.

Examination of shape complementarity in docking of Unbound proteins

H. Wolfson, R. Nussinov, R. Norel, 1999, Proteins.

Protein interface conservation across structure space

Raquel Norel, Qiangfeng Cliff Zhang, Donald Petrey, 2010, Proceedings of the National Academy of Sciences.

Structural bioinformatics of the interactome.

Barry Honig, Donald Petrey, B. Honig, 2014, Annual review of biophysics.

Template-based prediction of protein function.

José Ignacio Garzón, B. Honig, D. Petrey, 2015, Current opinion in structural biology.

Toward a “Structural BLAST”: Using structural relationships to infer function

B. Honig, D. Petrey, Fabian Dey, 2013, Protein science : a publication of the Protein Society.

Free energy determinants of tertiary structure and the evaluation of protein models

B. Honig, D. Petrey, Donald Petrey, 2000, Protein science : a publication of the Protein Society.

Is protein classification necessary? Toward alternative approaches to function annotation.

Barry Honig, Donald Petrey, B. Honig, 2009, Current opinion in structural biology.

Electrostatic contributions to protein–protein interactions: Fast energetic filters for docking and their physical basis

B Honig, R. Norel, B. Honig, 2001, Protein science : a publication of the Protein Society.

Solution NMR structures reveal unique homodimer formation by a winged helix-turn-helix motif and provide first structures for protein domain family PF10771

G. Montelione, B. Honig, J. Prestegard, 2012, Journal of Structural and Functional Genomics.

GRASP2: visualization, surface properties, and electrostatics of macromolecular structures and sequences.

Barry Honig, Donald Petrey, B. Honig, 2003, Methods in enzymology.

ReviewProtein Structure Prediction : Inroads to Biology

B. Honig, D. Petrey, Donald Petrey, 2022 .

PrePCI: A structure- and chemical similarity-informed database of predicted protein compound interactions

B. Honig, D. Petrey, Howook Hwang, 2022, bioRxiv.

Solution NMR structure of Alr2454 from Nostoc sp. PCC 7120, the first structural representative of Pfam domain family PF11267

G. Montelione, D. Petrey, T. Acton, 2012, Journal of Structural and Functional Genomics.

Integrating 3D structural information into systems biology

B. Honig, D. Petrey, D. Murray, 2021, The Journal of biological chemistry.

ER-mitochondria tethering by PDZD8 regulates Ca2+ dynamics in mammalian neurons

Yusuke Hirabayashi, Seok-Kyu Kwon, F. Polleux, 2017, Science.

Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling

Lei Xie, Avner Schlessinger, Emil Alexov, 2003, Proteins.

Bi-allelic missense disease-causing variants in RPL3L associate neonatal dilated cardiomyopathy with muscle-specific ribosome biogenesis

Christie M. Buchovecky, B. Honig, D. Petrey, 2020, Human Genetics.

Genetic Drivers of Kidney Defects in the DiGeorge Syndrome

Craig S. Wong, E. Zackai, H. Hakonarson, 2017, The New England journal of medicine.

De novo missense variants in PPP2R5D are associated with intellectual disability, macrocephaly, hypotonia, and autism

W. Chung, Yvonne W Wu, D. Petrey, 2015, neurogenetics.

Structure-based prediction of ligand–protein interactions on a genome-wide scale

Barry Honig, Donald Petrey, Howook Hwang, 2017, Proceedings of the National Academy of Sciences.

The WD40 Domain Is Required for LRRK2 Neurotoxicity

D. Petrey, W. Dauer, P. Liu, 2009, PLoS ONE.