G. Sheynkman

发表

Proteome-Scale Human Interactomics.

Gloria M. Sheynkman, M. Vidal, Katja Luck, 2017, Trends in biochemical sciences.

A reference map of the human protein interactome

Gary D. Bader, Yang Wang, Gary D Bader, 2019, bioRxiv.

Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation.

Anthony J. Cesnik, Lloyd M. Smith, Gloria M. Sheynkman, 2016, Annual review of analytical chemistry.

Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing

Gloria M. Sheynkman, Alyce A. Chen, Bridget E. Begg, 2016, Cell.

Global Identification of Protein Post-translational Modifications in a Single-Pass Database Search

Brian L. Frey, Lloyd M. Smith, Gloria M. Sheynkman, 2015, Journal of proteome research.

Discovery and Mass Spectrometric Analysis of Novel Splice-junction Peptides Using RNA-Seq*

Brian L. Frey, Lloyd M. Smith, Gloria M. Sheynkman, 2013, Molecular & Cellular Proteomics.

Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations

James E. Johnson, Brian L. Frey, Lloyd M. Smith, 2014, BMC Genomics.

Full-length mRNA sequencing uncovers a widespread coupling between transcription initiation and mRNA processing

Gloria M. Sheynkman, S. Turner, S. Anvar, 2018, Genome Biology.

Absolute Quantification of Prion Protein (90–231) Using Stable Isotope-Labeled Chymotryptic Peptide Standards in a LC-MRM AQUA Workflow

Lloyd M. Smith, Gloria M. Sheynkman, G. Sheynkman, 2012, Journal of The American Society for Mass Spectrometry.

ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms

Gloria M. Sheynkman, M. Vidal, M. Calderwood, 2019, Nature Communications.

Characterization of protein isoform diversity in human umbilical vein endothelial cells (HUVECs) via long-read proteogenomics

Gloria M. Sheynkman, Bipul R. Acharya, G. Sheynkman, 2022, bioRxiv.

A roadmap for the functional annotation of protein families: a community perspective

Benjamin M. Gyori, Lucy J. Colwell, Ian K. Blaby, 2022, Database J. Biol. Databases Curation.

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Jonathan M. Mudge, Angela N. Brooks, Gloria M. Sheynkman, 2021 .

A reference map of the human binary protein interactome

Patrick Aloy, Gary D. Bader, Yang Wang, 2020, Nature.

Large-scale mass spectrometric detection of variant peptides resulting from nonsynonymous nucleotide differences.

Michael R. Shortreed, Brian L. Frey, Lloyd M. Smith, 2014, Journal of proteome research.

Full-length transcript sequencing of human and mouse cerebral cortex identifies widespread isoform diversity and alternative splicing

Gloria M. Sheynkman, K. Moore, J. Mill, 2021, Cell reports.

ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms

Gloria M. Sheynkman, M. Vidal, M. Calderwood, 2020, Nature Communications.

Interpretable artificial intelligence and exascale molecular dynamics simulations to reveal kinetics: Applications to Alzheimer's disease.

Gloria M. Sheynkman, R. Nussinov, F. Cheng, 2021, Current opinion in structural biology.

Enhanced protein isoform characterization through long-read proteogenomics

Lloyd M. Smith, Gloria M. Sheynkman, A. Conesa, 2022, Genome Biology.

Genetic Regulation of SMC Gene Expression and Splicing Predict Causal CAD Genes

Gloria M. Sheynkman, Clint L. Miller, J. Björkegren, 2023, Circulation research.

Genetic regulation of human aortic smooth muscle cell gene expression and splicing predict causal coronary artery disease genes

Gloria M. Sheynkman, Clint L. Miller, J. Björkegren, 2022, bioRxiv.

Full-length mRNA sequencing uncovers a widespread coupling between transcription and mRNA processing

Gloria M. Sheynkman, S. Turner, S. Anvar, 2017, bioRxiv.

A reference map of the human binary protein interactome

Gary D Bader, István A. Kovács, Robert J. Weatheritt, 2020, Nature.

The lncRNA SLNCR Recruits the Androgen Receptor to EGR1-Bound Genes in Melanoma and Inhibits Expression of Tumor Suppressor p21

Gloria M. Sheynkman, G. Sheynkman, C. Novina, 2019, Cell reports.

Bridging the splicing gap in human genetics with long-read RNA sequencing: finding the protein isoform drivers of disease.

Gloria M. Sheynkman, C. Farber, G. Sheynkman, 2022, Human molecular genetics.

Endothelial cell cycle state determines propensity for arterial-venous fate

Gloria M. Sheynkman, Bipul R. Acharya, G. Sheynkman, 2020, bioRxiv.

Human Proteomic Variation Revealed by Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy

Michael R. Shortreed, Anthony J. Cesnik, Brian L. Frey, 2015, Journal of proteome research.

Improved Protein Inference from Multiple Protease Bottom-Up Mass Spectrometry Data.

Michael R. Shortreed, Robert J. Millikin, Lloyd M. Smith, 2019, Journal of proteome research.

AD-Syn-Net: systematic identification of Alzheimer’s disease-associated mutation and co-mutation vulnerabilities via deep learning

Gloria M. Sheynkman, Nidhi Sahni, G. Sheynkman, 2023, Briefings Bioinform..