J. Hallinan

Anil Wipat, Daniel Sutantyo, Christopher Walker, 2016, 2016 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB).

Cellular senescence: unravelling complexity

J. Hallinan, A. Wipat, C. Simillion, 2009, AGE.

Probabilistic latent semantic analysis applied to whole bacterial genomes identifies common genomic features.

J. Hallinan, A. Wipat, P. Zuliani, 2014, Journal of integrative bioinformatics.

Is newer better?--evaluating the effects of data curation on integrated analyses in Saccharomyces cerevisiae.

J. Hallinan, A. Wipat, K. James, 2012, Integrative biology : quantitative biosciences from nano to macro.

Modeling the spread of antibiotic resistance

Janet Wiles, J. Hallinan, 2000, Proceedings of the 2000 Congress on Evolutionary Computation. CEC00 (Cat. No.00TH8512).

Combining kinetic orders for efficient S-System modelling of gene regulatory network

Adrian B. R. Shatte, J. Hallinan, M. Chetty, 2022, Biosyst..

Filter feature selection based Boolean Modelling for Genetic Network Inference

Adrian B. R. Shatte, Hasini Nakulugamuwa Gamage, J. Hallinan, 2022, Biosyst..

Ensemble Regression Modelling for Genetic Network Inference

Adrian B. R. Shatte, Hasini Nakulugamuwa Gamage, J. Hallinan, 2022, 2022 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB).

B-cell activity markers are associated with different disease activity domains in primary Sjögren’s syndrome

S. Cockell, J. Hallinan, S. Harding, 2018, Rheumatology.

University of Birmingham B cell activity markers are associated with different disease activity domains in primary Sjögren’s syndrome

S. Cockell, J. Hallinan, W. Ng, 2018 .

Future‐proofing synthetic biology: educating the next generation

Anil Wipat, Richard I. Kitney, Kenneth Taylor, 2019, Engineering Biology.

A Genomewide Suppressor and Enhancer Analysis of cdc13-1 Reveals Varied Cellular Processes Influencing Telomere Capping in Saccharomyces cerevisiae

D J Wilkinson, J Hallinan, A Wipat, 2008, Genetics.

The SBOL Stack: A Platform for Storing, Publishing, and Sharing Synthetic Biology Designs.

Matthew R. Pocock, James Alastair McLaughlin, Anil Wipat, 2016, ACS synthetic biology.

Data Integration and Mining for Synthetic Biology Design.

Matthew R. Pocock, Phillip Lord, James Alastair McLaughlin, 2016, ACS synthetic biology.

Customizable views on semantically integrated networks for systems biology

Matthew R. Pocock, Darren J. Wilkinson, Phillip W. Lord, 2011, Bioinform..

A Transcriptional Signature of Fatigue Derived from Patients with Primary Sjögren’s Syndrome

Anil Wipat, Ian Giles, Jennifer Hallinan, 2015, PloS one.

A distributed computational search strategy for the identification of diagnostics targets: application to finding aptamer targets for methicillin-resistant staphylococci.

S. Cockell, J. Hallinan, A. Wipat, 2014, Journal of integrative bioinformatics.

A distributed computational search strategy for the identification of diagnostics targets: Application to finding aptamer targets for methicillin-resistant staphylococci

Anil Wipat, Jennifer Hallinan, Keith Flanagan, 2014, J. Integr. Bioinform..

Synthetic Biology: Life, Jim, but Not As We Know It

J. Hallinan, 2008 .

Gene duplication and hierarchical modularity in intracellular interaction networks.

Jennifer Hallinan, J. Hallinan, 2004, Bio Systems.

Antisense Transcription in the Mammalian Transcriptome RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium

Boris Lenhard, Martin C. Frith, Jun Kawai, 2005 .

Effects of an RNA control layer on the state space of Boolean models of genetic regulatory networks

Janet Wiles, Daniel R. Bradley, John S. Mattick, 2006, 2006 IEEE International Conference on Evolutionary Computation.

Evolutionary computation for the design of a stochastic switch for synthetic genetic circuits

Goksel Misirli, Anil Wipat, J. Hallinan, 2010, 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology.

Integration of Full-Coverage Probabilistic Functional Networks with Relevance to Specific Biological Processes

Anil Wipat, Katherine James, Jennifer Hallinan, 2009, DILS.

BacillusRegNet: A transcriptional regulation database and analysis platform for Bacillus species

Goksel Misirli, Anil Wipat, Jennifer Hallinan, 2014, J. Integr. Bioinform..

Bayesian integration of networks without gold standards

Darren J. Wilkinson, Phillip W. Lord, Anil Wipat, 2012, Bioinform..

Detection of malignancy associated changes in cervical cells using statistical and evolutionary computation techniques

Jennifer Susan Hallinan, J. Hallinan, 2000 .

Composable Modular Models for Synthetic Biology

Goksel Misirli, Anil Wipat, Jennifer Hallinan, 2014, ACM J. Emerg. Technol. Comput. Syst..

There's more to a model than code: understanding and formalizing in silico modeling experience

Janet Wiles, James Watson, Daniel R. Bradley, 2005, GECCO '05.

Tuning receiver characteristics in bacterial quorum communication: An evolutionary approach using standard virtual biological parts

Goksel Misirli, Anil Wipat, Jennifer Hallinan, 2014, 2014 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology.

BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology

Matthew R. Pocock, Joseph Mullen, Goksel Misirli, 2013, J. Integr. Bioinform..

Computational intelligence for metabolic pathway design: Application to the pentose phosphate pathway

S. Park, Anil Wipat, Jennifer Hallinan, 2016, 2016 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB).

Computational intelligence and machine learning in bioinformatics and computational biology

J. Hallinan, A. Wipat, M. Chetty, 2022, Biosyst..

Modelling The Fitness Landscapes of a SCRaMbLEd Yeast Genome

Goksel Misirli, Anil Wipat, Jennifer Hallinan, 2021, 2021 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB).

Model annotation for synthetic biology: automating model to nucleotide sequence conversion

Goksel Misirli, Anil Wipat, James R. Lawson, 2011, Bioinform..

Effects of damage to the CDM Stroop Model

Janet Wiles, A. Blair, J. Hallinan, 2000 .

Constructing synthetic biology workflows in the cloud

Gos Micklem, Matthew R. Pocock, James Alastair McLaughlin, 2017 .

Bridging the Gap between Design and Reality - A Dual Evolutionary Strategy for the Design of Synthetic Genetic Circuits

S. Park, Anil Wipat, Jennifer Hallinan, 2012, BIOINFORMATICS.

Cluster analysis of the p53 genetic regulatory network: topology and biology

Jennifer Hallinan, J. Hallinan, 2004, 2004 Symposium on Computational Intelligence in Bioinformatics and Computational Biology.

Network motifs in context: An exploration of the evolution of oscillatory dynamics in transcriptional networks

Anil Wipat, Jennifer Hallinan, J. Hallinan, 2008, 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology.

Motifs and Modules in Fractured Functional Yeast Networks

Anil Wipat, Jennifer Hallinan, J. Hallinan, 2007, 2007 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology.

Network Motifs, Feedback Loops and the Dynamics of Genetic Regulatory Networks

Paul T. Jackway, Jennifer Hallinan, J. Hallinan, 2005, 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology.

Clustering incorporating shortest paths identifies relevant modules in functional interaction networks

Matthew R. Pocock, Anil Wipat, Jennifer Hallinan, 2009, 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology.

Clustering and Cross-talk in a Yeast Functional Interaction Network

Anil Wipat, Jennifer Hallinan, J. Hallinan, 2006, 2006 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology.

Microbase2.0: a generic framework for computationally intensive bioinformatics workflows in the cloud.

Matthew R. Pocock, Anil Wipat, Jennifer Hallinan, 2012, Journal of integrative bioinformatics.

Standard virtual biological parts: a repository of modular modeling components for synthetic biology

Goksel Misirli, Anil Wipat, James R. Lawson, 2010, Bioinform..