Kaizhong Zhang

Jinfei Wang, Kaizhong Zhang, 2001, IGARSS 2001. Scanning the Present and Resolving the Future. Proceedings. IEEE 2001 International Geoscience and Remote Sensing Symposium (Cat. No.01CH37217).

Human Brain Perfusion MRI at 7T Using a Segmented True FISP ASL Method

Kaizhong Zhang, E. Grossman, 2008 .

De Novo Sequencing Assisted Approach for Characterizing Mixture MS/MS Spectra

B. Ma, Kaizhong Zhang, G. Lajoie, 2016, IEEE Transactions on NanoBioscience.

A software for interpretation of glycopeptides from MS / MS spectra

B. Ma, Kaizhong Zhang, B. Shan, 2004 .

Assessment of the MODIS Algorithm for Retrieval of Aerosol Parameters over the Ocean

K. Stamnes, Kaizhong Zhang, R. Spurr, 2006 .

Tree pattern matching

Kaizhong Zhang, Dennis Shasha, D. Shasha, 1997, Pattern Matching Algorithms.

New algorithms for editing distance between trees

Kaizhong Zhang, Dennis Shasha, D. Shasha, 1989 .

Approximate tree pattern matching

Kaizhong Zhang, Dennis Shasha, D. Shasha, 1997 .

Effic ient algorithms for local forest similarity and forest patt ern matching

Kaizhong Zhang, Kaizhong Zhang, 2014 .

Computing the editing distance between unordered labeled trees is NP-complete

Kaizhong Zhang, Kaizhong Zhang, 1993 .

NBPMF: Novel Approaches for Peptide Mass Fingerprinting Based on Network Inference

Kaizhong Zhang, Zhewei Liang, Gilles A. Lajoie, 2020 .

Edge Extraction with Gradient Directions

Kaizhong Zhang, Tieling Chen, William Tompkinson, 2009, IPCV.

A new algorithm for multispectral remotely sensed data clustering

Jinfei Wang, Kaizhong Zhang, Jinfei Wang, 1994 .

Linear Cartographic Data Acquisition from Scanned Topographic Maps

Jinfei Wang, Kaizhong Zhang, Jinfei Wang, 1996, Ann. GIS.

An improved algorithm for tree edit distance with applications for RNA secondary structure comparison

Kaizhong Zhang, Shihyen Chen, 2012, Journal of Combinatorial Optimization.

The editing distance between trees: Algorithms and applications

Kaizhong Zhang, Dennis Shasha, Kaizhong Zhang, 1989 .

Algorithms for local similarity between forests

Kaizhong Zhang, Zhewei Liang, 2013, Journal of Combinatorial Optimization.

SPIDER: software for protein identification from sequence tags with de novo sequencing error

Bin Ma, Kaizhong Zhang, Yonghua Han, 2004, Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004..

Algorithms for Approximate Graph Matching

Kaizhong Zhang, Jason Tsong-Li Wang, Gung-Wei Chirn, 1995, Inf. Sci..

A System for Approximate Tree Matching

Kaizhong Zhang, Dennis Shasha, Jason Tsong-Li Wang, 1994, IEEE Trans. Knowl. Data Eng..

Fast Serial and Parallel Algorithms for Approximate Tree Matching with VLDC's

Kaizhong Zhang, Dennis Shasha, Jason Tsong-Li Wang, 1992, CPM.

RNA molecules with structure dependent functions are uniquely folded.

Kaizhong Zhang, Shu-Yun Le, S. Le, 2002, Nucleic acids research.

Comparing multiple RNA secondary structures using tree comparisons

Kaizhong Zhang, Bruce A. Shapiro, Kaizhong Zhang, 1990, Comput. Appl. Biosci..

Kaizhong Zhang, Kaizhong Zhang, 2016, 2016 IEEE 15th International Conference on Cognitive Informatics & Cognitive Computing (ICCI*CC).

Bin Ma, Kaizhong Zhang, Shihyen Chen, 2009, Theor. Comput. Sci..

Word Complexity And Repetitions In Words

Kaizhong Zhang, Lucian Ilie, Sheng Yu, 2004, Int. J. Found. Comput. Sci..

Repetition Complexity of Words

Kaizhong Zhang, Lucian Ilie, Sheng Yu, 2002, DCFS.

Alignment of Trees - An Alternative to Tree Edit

Tao Jiang, Kaizhong Zhang, Lusheng Wang, 1994, Theor. Comput. Sci..

Prediction of phosphotyrosine signaling networks using a scoring matrix-assisted ligand identification approach

Kaizhong Zhang, Haiming Huang, S. Li, 2008, Nucleic acids research.

RNA-RNA Interaction Prediction and Antisense RNA Target Search

Kaizhong Zhang, Süleyman Cenk Sahinalp, Can Alkan, 2005, RECOMB.

Combinatorial Pattern Matching

Bin Ma, Kaizhong Zhang, Bin Ma, 1995, Lecture Notes in Computer Science.

Perfect phylogenetic networks with recombination

Kaizhong Zhang, Lusheng Wang, Louxin Zhang, 2001, J. Comput. Biol..

Proceedings of the 18th annual symposium on Combinatorial Pattern Matching

Bin Ma, Kaizhong Zhang, Bin Ma, 2007 .

Predicting Consensus Structures for RNA Alignments Via Pseudo-Energy Minimization

Kaizhong Zhang, Bruce A. Shapiro, Junilda Spirollari, 2009, Bioinformatics and biology insights.

RNA Secondary Structure Prediction Via Energy Density Minimization

Kaizhong Zhang, Jeremy Buhler, Süleyman Cenk Sahinalp, 2006, RECOMB.

NBPMF: Novel network-based inference methods for peptide mass fingerprinting

Kaizhong Zhang, Gilles A. Lajoie, Zhewei Liang, 2017, 2017 IEEE 16th International Conference on Cognitive Informatics & Cognitive Computing (ICCI*CC).

A General Edit Distance between RNA Structures

Bin Ma, Tao Jiang, Kaizhong Zhang, 2002, J. Comput. Biol..

Simple Fast Algorithms for the Editing Distance Between Trees and Related Problems

Kaizhong Zhang, Dennis Shasha, D. Shasha, 1989, SIAM J. Comput..

An effective algorithm for peptide de novo sequencing from MS/MS spectra

Bin Ma, Kaizhong Zhang, Chengzhi Liang, 2005, J. Comput. Syst. Sci..

An Effective Algorithm for the Peptide De Novo Sequencing from MS/MS Spectrum

Bin Ma, Kaizhong Zhang, Chengzhi Liang, 2003, CPM.

Proceedings of the 18th annual conference on Combinatorial Pattern Matching

Bin Ma, Kaizhong Zhang, Bin Ma, 2007 .

Optimizing Spaced $k$-mer Neighbors for Efficient Filtration in Protein Similarity Search

Bin Ma, Kaizhong Zhang, Weiming Li, 2014, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Efficient filtration for similarity search with spaced k-mer neighbors

Bin Ma, Kaizhong Zhang, Weiming Li, 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine.

Amino Acid Classification and Hash Seeds for Homology Search

Bin Ma, Kaizhong Zhang, Weiming Li, 2009, BICoB.

On the Editing Distance Between Undirected Acyclic Graphs

Kaizhong Zhang, Dennis Shasha, Jason Tsong-Li Wang, 1996, Int. J. Found. Comput. Sci..

Exact and approximate algorithms for unordered tree matching

Kaizhong Zhang, Dennis Shasha, Jason Tsong-Li Wang, 1994, IEEE Trans. Syst. Man Cybern..

A new algorithm for computing similarity between RNA structures

Kaizhong Zhang, Shu-Yun Le, Gregory D. Collins, 2001, Inf. Sci..

Finding Common RNA Secondary Structures from RNA Sequences

Kaizhong Zhang, Zhuozhi Wang, Kaizhong Zhang, 1999, CPM.

Bin Ma, Kaizhong Zhang, Lusheng Wang, 1999, Theor. Comput. Sci..

SPIDER: software for protein identification from sequence tags with de novo sequencing error.

Bin Ma, Kaizhong Zhang, Yonghua Han, 2004, Proceedings. IEEE Computational Systems Bioinformatics Conference.

Spectra library assisted de novo peptide sequencing for HCD and ETD spectra pairs

Kaizhong Zhang, Yan Yan, Kaizhong Zhang, 2016, BMC Bioinformatics.

An Approach for Peptide Identification by De Novo Sequencing of Mixture Spectra

Bin Ma, Yi Liu, Kaizhong Zhang, 2017, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

An Approach for Matching Mixture MS/MS Spectra with a Pair of Peptide Sequences in a Protein Database

Bin Ma, Yi Liu, Kaizhong Zhang, 2015, ISBRA.

An Effective Algorithm for Peptide de novo Sequencing from Mixture MS/MS Spectra

Bin Ma, Yi Liu, Kaizhong Zhang, 2014, ISBRA.

On the Editing Distance Between Unordered Labeled Trees

Kaizhong Zhang, Richard Statman, Dennis Shasha, 1992, Inf. Process. Lett..

Alignment between Two Multiple Alignments

Bin Ma, Kaizhong Zhang, Zhuozhi Wang, 2003, CPM.

On the Longest Common Rigid Subsequence Problem

Moshe Lewenstein, Bin Ma, Kaizhong Zhang, 2005, Algorithmica.

Finding Patterns in Three-Dimensional Graphs: Algorithms and Applications to Scientific Data Mining

Kaizhong Zhang, Dennis Shasha, Jason Tsong-Li Wang, 2002, IEEE Trans. Knowl. Data Eng..

DISC: DISulfide linkage Characterization from tandem mass spectra

Yi Liu, Kaizhong Zhang, Weiping Sun, 2017, Bioinform..

Combinatorial pattern discovery for scientific data: some preliminary results

Kaizhong Zhang, Dennis Shasha, Jason Tsong-Li Wang, 1994, SIGMOD '94.

Quantizer monotonicities and globally optimal scalar quantizer design

Kaizhong Zhang, Xiaolin Wu, Xiaolin Wu, 1993, IEEE Trans. Inf. Theory.

Some MAX SNP-Hard Results Concerning Unordered Labeled Trees

Tao Jiang, Kaizhong Zhang, Tao Jiang, 1994, Inf. Process. Lett..

Dynamic Processor Allocation For Parallel Algorithms In Image Processing

Kaizhong Zhang, Robert A. Hummel, R. Hummel, 1987, Photonics West - Lasers and Applications in Science and Engineering.

Fast Algorithms for the Unit Cost Editing Distance Between Trees

Kaizhong Zhang, Dennis Shasha, D. Shasha, 1990, J. Algorithms.

MetricMap: an embedding technique for processing distance-based queries in metric spaces

Kaizhong Zhang, Dennis Shasha, Jason Tsong-Li Wang, 2005, IEEE Transactions on Systems, Man, and Cybernetics, Part B (Cybernetics).

An Index Structure for Data Mining and Clustering

Kaizhong Zhang, Dennis Shasha, Jason Tsong-Li Wang, 2000, Knowledge and Information Systems.

An Improved Approach for N-Linked Glycan Structure Identification from HCD MS/MS Spectra

Bin Ma, Kaizhong Zhang, Weiping Sun, 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

An approach for N-linked glycan identification from MS/MS spectra by target-decoy strategy

Yi Liu, Kaizhong Zhang, Weiping Sun, 2018, Comput. Biol. Chem..

Spectra library assisted de novo peptide sequencing for HCD and ETD spectra pairs

Kaizhong Zhang, Yan Yan, 2016, BMC Bioinformatics.

A Novel Algorithm for Glycan de novo Sequencing Using Tandem Mass Spectrometry

Bin Ma, Kaizhong Zhang, Weiping Sun, 2015, ISBRA.

Evaluating a class of distance-mapping algorithms for data mining and clustering

Kaizhong Zhang, Dennis Shasha, Jason Tsong-Li Wang, 1999, KDD '99.

Approximate Tree Matching in the Presence of Variable Length Don't Cares

Kaizhong Zhang, Dennis Shasha, Jason Tsong-Li Wang, 1994, J. Algorithms.

Deploying Wireless Sensor Networks under Limited Mobility Constraints

Bin Ma, Kaizhong Zhang, Dong Xuan, 2007, IEEE Transactions on Mobile Computing.

A constrained edit distance between unordered labeled trees

Kaizhong Zhang, Kaizhong Zhang, 1996, Algorithmica.

PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry.

Ming Li, B. Ma, Kaizhong Zhang, 2003, Rapid communications in mass spectrometry : RCM.

An Algorithm for Finding the Largest Approximately Common Substructures of Two Trees

Kaizhong Zhang, Dennis Shasha, Jason Tsong-Li Wang, 1998, IEEE Trans. Pattern Anal. Mach. Intell..

Interpreting neuronal population activity by reconstruction: unified framework with application to hippocampal place cells.

B L McNaughton, T J Sejnowski, K Zhang, 1998, Journal of neurophysiology.

Locality and Gaps in RNA Comparison

Gad M. Landau, Kaizhong Zhang, Rolf Backofen, 2007, J. Comput. Biol..

PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry.

Ming Li, B. Ma, Kaizhong Zhang, 2003, Rapid communications in mass spectrometry : RCM.

NBPMF: Novel Peptide Mass Fingerprinting Based on Network Inference

Kaizhong Zhang, Gilles A. Lajoie, Zhewei Liang, 2017, Int. J. Cogn. Informatics Nat. Intell..

Complexities and Algorithms for Glycan Sequencing Using Tandem Mass Spectrometry

Bin Ma, Kaizhong Zhang, Baozhen Shan, 2008, J. Bioinform. Comput. Biol..

An automata approach to match gapped sequence tags against protein database

Bin Ma, Kaizhong Zhang, Yonghua Han, 2004, Int. J. Found. Comput. Sci..

NBPMF

Kaizhong Zhang, G. Lajoie, Zhewei Liang, 2020, Advances in Computational Intelligence and Robotics.

Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry

Bin Ma, Kaizhong Zhang, Baozhen Shan, 2007, APBC.

PEAKS : A Powerful Software Tool for the De Novo Sequencing of Peptides from MS / MS Data

Ming Li, B. Ma, Kaizhong Zhang, 2002 .

A new quartet approach for reconstructing phylogenetic trees: quartet joining method

Bin Ma, Kaizhong Zhang, Lei Xin, 2007, J. Comb. Optim..

Algorithms for the constrained editing distance between ordered labeled trees and related problems

Kaizhong Zhang, Kaizhong Zhang, 1995, Pattern Recognit..

On Comparing Two Structured RNA Multiple alignments

Kaizhong Zhang, Anurag Verma, Jason Tsong-Li Wang, 2010, J. Bioinform. Comput. Biol..

Characterizing Regular Languages with Polynomial Densities

Jeffrey Shallit, Kaizhong Zhang, Sheng Yu, 1992, MFCS.

Algorithms for local similarity between forests

Kaizhong Zhang, Zhewei Liang, Kaizhong Zhang, 2013, Journal of Combinatorial Optimization.

Pattern matching in unordered trees

Kaizhong Zhang, Dennis Shasha, Jason Tsong-Li Wang, 1992, Proceedings Fourth International Conference on Tools with Artificial Intelligence TAI '92.

An algorithm for detecting homologues of known structured RNAs in genomes

Kaizhong Zhang, Shu-Yun Le, Jacob V. Maizel, 2004, Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004..

MHCherryPan. a novel model to predict the binding affinity of pan-specific class I HLA-peptide

Kaizhong Zhang, Yuanyuan Han, Xuezhi Xie, 2019, 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

An approach for N-linked glycan identification from MS/MS spectra by target-decoy strategy

Kaizhong Zhang, Yi Liu, Weiping Sun, 2018, Comput. Biol. Chem..

RADAR: An InteractiveWeb-Based Toolkit for RNA Data Analysis and Research

Kaizhong Zhang, Bin Tian, Jason Tsong-Li Wang, 2006, Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06).

ATreeGrep: approximate searching in unordered trees

Kaizhong Zhang, Dennis Shasha, Jason Tsong-Li Wang, 2002, Proceedings 14th International Conference on Scientific and Statistical Database Management.

Kaizhong Zhang, Jason Tsong-Li Wang, J. Wang, 2001, Pattern Recognit..

PEAKS: Powerful Software for Peptide De Novo Sequencing by MS/MS

Bin Ma, Kaizhong Zhang, Gilles A. Lajoie, 2003 .

Airborne LIDAR Data Processing and Analysis Tools

Kaizhong Zhang, Kaizhong Zhang, 2007 .