C. Etchebest

发表

Dynamical properties of the MscL of Escherichia coli: a normal mode analysis.

Y. Sanejouand, H. Valadié, J. J. Lacapcre, 2003, Journal of molecular biology.

A reduced amino acid alphabet for understanding and designing protein adaptation to mutation

A. G. Brevern, C. Etchebest, C. Benros, 2007, European Biophysics Journal.

A new approach to the rapid determination of protein side chain conformations.

R. Lavery, C. Etchebest, P. Tufféry, 1991, Journal of biomolecular structure & dynamics.

Bayesian probabilistic approach for predicting backbone structures in terms of protein blocks

C. Etchebest, S. Hazout, A. D. de Brevern, 2000, Proteins.

A structural alphabet for local protein structures: Improved prediction methods

C. Etchebest, C. Benros, S. Hazout, 2005, Proteins.

Sequence–structure relationship study in all-α transmembrane proteins using an unsupervised learning approach

A. G. Brevern, C. Etchebest, J. Esque, 2015, Amino Acids.

Describing protein structure: A general algorithm yielding complete helicoidal parameters and a unique overall axis

R. Lavery, C. Etchebest, H. Sklenar, 1989, Proteins.

Comparison of three algorithms for the assignment of secondary structure in proteins: the advantages of a consensus assignment.

N. Colloc'h, B. Henrissat, C. Etchebest, 1993, Protein engineering.

Extension of a local backbone description using a structural alphabet: A new approach to the sequence‐structure relationship

H. Valadié, C. Etchebest, S. Hazout, 2002, Protein science : a publication of the Protein Society.

in silico prediction of protein flexibility with local structure approach.

C. Etchebest, A. Bornot, N. Srinivasan, 2019, Biochimie.

Multiple interests in structural models of DARC transmembrane protein.

A. G. Brevern, C. Etchebest, A. D. de Brevern, 2010, Transfusion clinique et biologique : journal de la Societe francaise de transfusion sanguine.

“Pinning strategy”: a novel approach for predicting the backbone structure in terms of protein blocks from sequence

A. G. Brevern, C. Etchebest, C. Benros, 2007, Journal of Biosciences.

Unraveling proteins: a molecular mechanics study.

R. Lavery, R. Rohs, C. Etchebest, 1999, Biophysical journal.

Dynamics and deformability of α-, 310- and π-helices

A. G. Brevern, Nicolas K. Shinada, C. Etchebest, 2017 .

Hydrophobic neighboring homology (HNH) dotplot: an approach for assessing structurally similar motifs in proteins.

C. Etchebest, S. Hazout, J. Mornon, 1994, Computer methods and programs in biomedicine.

The C Terminus of Rotavirus VP4 Protein Contains an Actin Binding Domain Which Requires Cooperation with the Coiled-Coil Domain for Actin Remodeling

C. Etchebest, A. Gardet, G. Trugnan, 2018, Journal of Virology.

Determining membrane protein structures: still a challenge!

Catherine Etchebest, Eva Pebay-Peyroula, E. Pebay-Peyroula, 2007, Trends in biochemical sciences.

New insights of membrane environment effects on MscL channel mechanics from theoretical approaches

H. Valadié, C. Etchebest, A. Stadler, 2008, Proteins.

The Reconstruction of Condition-Specific Transcriptional Modules Provides New Insights in the Evolution of Yeast AP-1 Proteins

C. Etchebest, F. Devaux, G. Lelandais, 2011, PloS one.

Discrete analyses of protein dynamics

Nicolas K. Shinada, Akhila Melarkode Vattekatte, C. Etchebest, 2019, Journal of biomolecular structure & dynamics.

Modelling of transmembrane α-helix bundles

R. Lavery, C. Etchebest, P. Tufféry, 1995 .

Steps Towards Predicting the Structure of Membrane Proteins

R. Lavery, C. Etchebest, P. Tufféry, 1994 .

Amphipathic-Lipid-Packing-Sensor interactions with lipids assessed by atomistic molecular dynamics.

C. Etchebest, R. Gautier, P. Fuchs, 2011, Biochimica et biophysica acta.

Energetic and Molecular Water Permeation Mechanisms of the Human Red Blood Cell Urea Transporter B

C. Etchebest, P. Ripoche, Slim Azouzi, 2013, PloS one.

Diseases – Drug Targets ( 2009 ) in silico studies on DARC

C. Etchebest, O. Bertrand, Y. Colin, 2018 .

Construction and validation of an atomic model for bacterial TSPO from electron microscopy density, evolutionary constraints, and biochemical and biophysical data.

K. Hinsen, C. Etchebest, J. Lacapere, 2015, Biochimica et biophysica acta.

Molecular Modeling of Transporters: From Low Resolution Cryo-Electron Microscopy Map to Conformational Exploration. The Example of TSPO.

C. Etchebest, Aurore Vaitinadapoule, 2017, Methods in molecular biology.

Linear Gramicidins : Influence of the Nature of the Aromatic Side Chains of the Channel Conductance

C. Etchebest, F. Heitz, Y. Trudelle, 1988 .

Experimental and theoretical study of gramicidin P, an analog of gramicidin A with a methylamine C‐terminal

C. Etchebest, F. Heitz, Y. Trudelle, 1987, FEBS letters.

New insights into GluT1 mechanics during glucose transfer

C. Etchebest, T. Galochkina, Matthieu Ng Fuk Chong, 2019, Scientific Reports.

Sequence–structure relationship study in all-α transmembrane proteins using an unsupervised learning approach

A. G. Brevern, C. Etchebest, J. Esque, 2015, Amino Acids.

New KCNN4 Variants Associated With Anemia: Stomatocytosis Without Erythrocyte Dehydration

C. Etchebest, L. D. Da Costa, L. Garçon, 2022, Frontiers in Physiology.

Mg2+ in the Major Groove Modulates B-DNA Structure and Dynamics

C. Etchebest, B. Hartmann, Marc Gueroult, 2012, PloS one.

The effect of the amino-acid side chains on the energy profiles for ion transport in the gramicidin A channel.

C. Etchebest, A. Pullman, 1985, Journal of Biomolecular Structure and Dynamics.

Energy profile of Cs+ in gramicidin A in the presence of water. Problem of the ion selectivity of the channel.

C. Etchebest, A. Pullman, 1988, Journal of biomolecular structure & dynamics.

The Gramicidin a Channel: Left Versus Right-Handed Helix

C. Etchebest, A. Pullman, 1988 .

The gramicidin A channel

C. Etchebest, A. Pullman, 1986 .

The gramicidin A channel: energetics and structural characteristics of the progression of a sodium ion in the presence of water.

C. Etchebest, A. Pullman, 1986, Journal of biomolecular structure & dynamics.

The gramicidin A channel: theoretical energy profile computed for single occupancy by a divalent cation, Ca2+

S. Ranganathan, C. Etchebest, A. Pullman, 1985 .

The gramicidin A channel: comparison of the energy profiles of Na+, K+ and Cs+

C. Etchebest, A. Pullman, Shoba Ranganathan, 1984, FEBS letters.

The gramicidin A channel

C. Etchebest, A. Pullman, 1984 .

The gramicidin A channel: the energy profile for single and double occupancy in a head‐to‐head β6.3 3,3‐helical dimer backbone

C. Etchebest, A. Pullman, 1983 .

Structural Model of the Anion Exchanger 1 (SLC4A1) and Identification of Transmembrane Segments Forming the Transport Site

C. Etchebest, H. Guizouarn, Damien Barneaud-Rocca, 2013, The Journal of Biological Chemistry.

Structural and dynamical insights into the opening mechanism of P. aeruginosa OprM channel.

M. Lascombe, C. Etchebest, G. Phan, 2010, Structure.

A model for the photosystem II reaction center core including the structure of the primary donor P680.

P Tuffery, C Etchebest, C. Etchebest, 1996, Biochemistry.

The calculation of molecular electrostatic potential from a multipole expansion based on localized orbitals and developed at their centroids: Accuracy and applicability for macromolecular computations

R. Lavery, C. Etchebest, A. Pullman, 1982 .

A theoretical study of the selective alkali and alkaline‐earth cation binding properties of valinomycin

C. Etchebest, N. Gresh, A. Pullman, 1981 .

Calculation of the molecular electrostatic potential from a multipole expansion based on localized orbitals

R. Lavery, C. Etchebest, A. Pullman, 1982 .

Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata

Catherine Etchebest, Gaëlle Lelandais, Frédéric Devaux, 2008, Genome Biology.

In silico studies on DARC.

Ludovic Autin, Catherine Etchebest, Alexandre G de Brevern, 2009, Infectious disorders drug targets.

A structural model of a seven-transmembrane helix receptor: the Duffy antigen/receptor for chemokine (DARC).

A. G. Brevern, A G de Brevern, Y Colin, 2005, Biochimica et biophysica acta.

Decoding the structural events in substrate‐gating mechanism of eukaryotic prolyl oligopeptidase using normal mode analysis and molecular dynamics simulations

C. Etchebest, R. Sowdhamini, Swati Kaushik, 2014, Proteins.

Theoretical model of human apolipoprotein B100 tertiary structure

C. Etchebest, A. Kriško, 2006, Proteins.

Quality assessment of VHH models

C. Etchebest, A. D. de Brevern, Jean-Christophe Gelly, 2023, Journal of biomolecular structure & dynamics.

VHH Structural Modelling Approaches: A Critical Review

Nicolas K. Shinada, Akhila Melarkode Vattekatte, C. Etchebest, 2022, International journal of molecular sciences.

Clustering of protein domains for functional and evolutionary studies

Catherine Etchebest, Bojan Basrak, Anita Krisko, 2009, BMC Bioinformatics.

Taking advantage of local structure descriptors to analyze interresidue contacts in protein structures and protein complexes

Anne-Claude Camproux, Catherine Etchebest, Leslie Regad, 2008, Proteins.

Repository of Enriched Structures of Proteins Involved in the Red Blood Cell Environment (RESPIRE)

S Téletchéa, H Santuz, S Léonard, 2019, PloS one.

Insights into the ZIKV NS1 Virology from Different Strains through a Fine Analysis of Physicochemical Properties

Sergio A. Poveda-Cuevas, C. Etchebest, F. L. Barroso da Silva, 2018, ACS omega.

TMPL: a database of experimental and theoretical transmembrane protein models positioned in the lipid bilayer

Jean-Christophe Gelly, Catherine Etchebest, Guillaume Postic, 2017, Database J. Biol. Databases Curation.

Protein flexibility in the light of structural alphabets

Bohdan Schneider, L. S. Swapna, Pierrick Craveur, 2015, Front. Mol. Biosci..

Cloning and modeling of CD8 beta in the amphibian ambystoma Mexicanum. Evolutionary conserved structures for interactions with major histocompatibility complex (MHC) class I molecules.

C. Etchebest, P. Tufféry, F. Guillet, 2002, Gene.

Critical review of general guidelines for membrane proteins model building and analysis.

Catherine Etchebest, Gaelle Debret, C. Etchebest, 2010, Methods in molecular biology.

Antioxidant and Membrane Binding Properties of Serotonin Protect Lipids from Oxidation.

C. Etchebest, K. El Kirat, S. Morandat, 2017, Biophysical journal.

Predicting protein flexibility through the prediction of local structures

Catherine Etchebest, Aurélie Bornot, Alexandre G de Brevern, 2011, Proteins.

On the orientation of a designed transmembrane peptide: toward the right tilt angle?

J. Killian, C. Etchebest, P. Fuchs, 2007, Journal of the American Chemical Society.

Prediction of protein side chain conformations: a study on the influence of backbone accuracy on conformation stability in the rotamer space.

P Tufféry, S Hazout, C Etchebest, 1997, Protein engineering.

Aminopeptidase B, a glucagon-processing enzyme: site directed mutagenesis of the Zn2+-binding motif and molecular modelling

C. Etchebest, P. Nicolas, T. Foulon, 2007, BMC Biochemistry.

Prediction of the positioning of the seven transmembrane alpha-helices of bacteriorhodopsin. A molecular simulation study.

P Tuffery, C Etchebest, R Lavery, 1994, Journal of molecular biology.

The computational analyses, molecular dynamics of fatty-acid transport mechanism to the CD36 receptor

C. Etchebest, J. Akachar, A. Ibrahimi, 2021, Scientific Reports.

PredyFlexy: flexibility and local structure prediction from sequence

Pierrick Craveur, Alexandre G. de Brevern, Jean-Christophe Gelly, 2012, Nucleic Acids Res..

Conical lipids in flat bilayers induce packing defects similar to that induced by positive curvature.

C. Etchebest, D. Tieleman, S. Vanni, 2013, Biophysical journal.

Amphipathic lipid packing sensor motifs: probing bilayer defects with hydrophobic residues.

C. Etchebest, S. Vanni, G. Drin, 2013, Biophysical journal.

Protein Peeling 2: a web server to convert protein structures into series of protein units

Serge A. Hazout, Alexandre G. de Brevern, Jean-Christophe Gelly, 2006, Nucleic Acids Res..

A short survey on protein blocks

Bohdan Schneider, L. S. Swapna, Narayanaswamy Srinivasan, 2010, Biophysical Reviews.

Influence of assignment on the prediction of transmembrane helices in protein structures

Alexandre G. de Brevern, Catherine Etchebest, Aurélie Bornot, 2010, Amino Acids.

- 1-A new prediction strategy for long local protein structures using an original description

Catherine Etchebest, Aurélie Bornot, Alexandre G de Brevern, 2018 .

Assessing a novel approach for predicting local 3D protein structures from sequence

Cristina Benros, Catherine Etchebest, Alexandre G de Brevern, 2005, Proteins.

Local backbone structure prediction of proteins

Serge A. Hazout, Alexandre G. de Brevern, Cristina Benros, 2004, Silico Biol..

General Trends of the Camelidae Antibody VHHs Domain Dynamics

Akhila Melarkode Vattekatte, C. Etchebest, A. D. de Brevern, 2023, International journal of molecular sciences.

Protein structural alphabets: beyond the secondary structure description

Pierre Tufféry, Anne-Claude Camproux, Alexandre G. de Brevern, 2001 .

Evaluation of Transmembrane Protein Structural Models Using HPMScore

C. Etchebest, A. D. de Brevern, J. Esque, 2023, BioMedInformatics.

Self-association features of NS1 proteins from different flaviviruses

C. Etchebest, Fernando B. R. da Silva, S. A. Poveda-Cuevas, 2022, bioRxiv.

Insights into Brain Glycogen Metabolism

C. Etchebest, Ximing Xu, A. Haouz, 2016, The Journal of Biological Chemistry.

New insights into GluT1 mechanics during glucose transfer

C. Etchebest, T. Galochkina, Matthieu Ng Fuk Chong, 2019, Scientific Reports.

A critical comparison of search algorithms applied to the optimization of protein side‐chain conformations

Pierre Tufféry, Serge A. Hazout, Catherine Etchebest, 1993, J. Comput. Chem..

Multisensory VR interaction for protein-docking in the CoRSAIRe project

Mehdi Ammi, Julien Nelson, Nicolas Férey, 2009, Virtual Reality.

How the Strain Origin of Zika Virus NS1 Protein Impacts Its Dynamics and Implications to Their Differential Virulence

Catherine Etchebest, Sergio A. Poveda-Cuevas, Fernando Luís Barroso da Silva, 2021, J. Chem. Inf. Model..

Molecular and structural characterization of a novel high‐prevalence antigen of the Augustine blood group system

C. Etchebest, Jean-Christophe Gelly, Y. Colin, 2023, Transfusion.

Mutation in the substrate-binding site of aminopeptidase B confers new enzymatic properties.

C. Etchebest, P. Nicolas, T. Foulon, 2011, Biochimie.

Versatile Dimerisation Process of Translocator Protein (TSPO) Revealed by an Extensive Sampling Based on a Coarse-Grained Dynamics Study

Frédéric Cadet, Julien Diharce, Rajas Rao, 2020, J. Chem. Inf. Model..

NS1 from Two Zika Virus Strains Differently Interact with a Membrane: A Plausible Explanation for their Differential Virulence

C. Etchebest, F. L. Barroso da Silva, S. A. Poveda-Cuevas, 2022, bioRxiv.

Conformational and helicoidal analysis of the molecular dynamics of proteins: “Curves,” dials and windows for a 50 psec dynamic trajectory of BPTI

C Etchebest, R Lavery, S. Swaminathan, 1990, Proteins.

Next generation sequencing (NGS) interest in deciphering erythrocyte molecular defects' association in red cell disorders: Clinical and erythrocyte phenotypes of patients with mutations inheritance in PIEZO1, Spectrin ß1, RhAG and SLC4A1.

C. Etchebest, L. D. Da Costa, O. Fenneteau, 2023, Blood cells, molecules & diseases.

On the identification of electrostatic epitopes in flavivirus by computer simulations.

Fernando L. Barroso da Silva, Catherine Etchebest, Sergio A. Poveda-Cuevas, 2019, Journal of chemical information and modeling.

Rotational orientation of transmembrane alpha-helices in bacteriorhodopsin. A neutron diffraction study.

D. Engelman, C. Etchebest, J. Popot, 1994, Journal of molecular biology.

NS1 from Two Zika Virus Strains Differently Interact with a Membrane: Insights to Understand Their Differential Virulence

C. Etchebest, F. Silva, S. A. Poveda-Cuevas, 2023, J. Chem. Inf. Model..

An Isozyme-specific Redox Switch in Human Brain Glycogen Phosphorylase Modulates Its Allosteric Activation by AMP*♦

C. Etchebest, J. Vinh, J. Dupret, 2016, The Journal of Biological Chemistry.

Aminopeptidase B, a glucagon-processing enzyme: site directed mutagenesis of the Zn2+-binding motif and molecular modelling.

C. Etchebest, P. Nicolas, T. Foulon, 2007, BMC biochemistry.

A procedure for refining a coiled coil protein structure using x-ray fiber diffraction and modeling.

C. Etchebest, J. Doucet, F. Briki, 2002, Biophysical journal.