P. Dean

发表

Receptor flexibility in de novo ligand design and docking.

N. P. Todorov, I. Alberts, P. Dean, 2005, Journal of medicinal chemistry.

Recent advances in structure-based rational drug design.

P. Dean, P. Gane, 2000, Current opinion in structural biology.

Molecular recognition: optimized searching through rotational 3-space for pattern matches on molecular surfaces

P. Dean, P. Chau, 1987 .

Molecular recognition: 3d surface structure comparison by gnomonic

P. Dean, P. Chau, 1987 .

Statistical method for surface pattern-making between dissimilar molecules: electrostatic potentials and accessible surfaces

P. Dean, S. Namasivayam, 1986 .

Issues in Molecular Diversity and the Role of Ligand Binding Sites

Richard A. Lewis, P. Dean, James C. Smith, 2002 .

Molecular diversity in drug design

Philip M. Dean, Richard A. Lewis, P. Dean, 2002 .

WaterScore: a novel method for distinguishing between bound and displaceable water molecules in the crystal structure of the binding site of protein-ligand complexes

Ricardo L. Mancera, Philip M. Dean, Alfonso T. García-Sosa, 2003, Journal of molecular modeling.

Glucose‐induced electrical activity in pancreatic islet cells

P M Dean, P. Dean, E K Matthews, 1970, The Journal of physiology.

Probes for chemical genomics by design.

Philip M Dean, Edward D Zanders, P. Dean, 2002, Drug discovery today.

Ligand docking and design in a flexible receptor site

Philip M. Dean, Per Källblad, I. Alberts, 2005 .

SkelGen: a general tool for structure-based de novo ligand design

N. P. Todorov, P. Dean, S. B. Kirton, 2006, Expert opinion on drug discovery.

Automated site-directed drug design : the formation of molecular templates in primary structure generation

Richard A. Lewis, R. A. Lewis, P. Dean, 1989, Proceedings of the Royal Society of London. B. Biological Sciences.

The search for functional correspondences in molecular structure between two dissimilar molecules.

P M Dean, D J Danziger, P. Dean, 1985, Journal of theoretical biology.

Automated site-directed drug design : the prediction and observation of ligand point positions at hydrogen-bonding regions on protein surfaces

P M Dean, D J Danziger, P. Dean, 1989, Proceedings of the Royal Society of London. B. Biological Sciences.

Scaffold hopping in de novo design. Ligand generation in the absence of receptor information.

Philip M Dean, N. P. Todorov, David G Lloyd, 2004, Journal of medicinal chemistry.

Molecular Similarity in Drug Design

P. M. Dean, P. Dean, 2007 .

Backbone–backbone geometry of tertiary contacts between α‐helices

Philip M. Dean, Per Källblad, P. Dean, 2004 .

Site-specific molecular design and its relevance to pharmacogenomics and chemical biology

P. Dean, E. Zanders, D. Bailey, 2001, The Pharmacogenomics Journal.

Chapter 32. Pharmacogenomics and its Impact on Drug Design and Optimisation

P. Dean, D. Bailey, 1999 .

Efficient conformational sampling of local side-chain flexibility.

Philip M Dean, Per Källblad, P. Dean, 2003, Journal of molecular biology.

QUASI: A Novel Method for Simultaneous Superposition of Multiple Flexible Ligands and Virtual Screening Using Partial Similarity.

N. P. Todorov, I. Alberts, P. Dean, 2007 .

Miniature depolarization potentials in pancreatic acinar cells.

P. Dean, E. K. Matthews, 1968, The Journal of physiology.

The bioelectrical properties of pancreatic islet cells: Effect of diabetogenic agents

P. Dean, E. K. Matthews, 1972, Diabetologia.

Biochemistry and Biophysics of Insulin Secretion

P. Dean, F. Matschinsky, W. Malaisse, 1975 .

DRUG‐RECEPTOR RECOGNITION: MOLECULAR ORIENTATION AND DIELECTRIC EFFECTS

P. Dean, 1981, British journal of pharmacology.

DRUG‐RECEPTOR RECOGNITION: ELECTROSTATIC FIELD LINES AT THE RECEPTOR AND DIELECTRIC EFFECTS

P. Dean, 1981, British journal of pharmacology.

Property Patches in GPCRs: A Multivariate Study

P. Dean, Per Källblad, 2000 .

Receptor-Based Molecular Diversity: Analysis of HIV Protease Inhibitors

P. Dean, T. D. Perkins, Nasfim Haque, 2000 .

New tools for quantifying molecular diversity

P. Dean, L. Furness, D. Bailey, 1999 .

ELECTRICAL ACTIVITY IN ISLET CELLS

P. Dean, E. K. Matthews, 1970 .

Surface electrostatic-charge measurements on islet and zymogen granules: Effect of calcium ions

P. Dean, 1974, Diabetologia.

Alloxan on islet cell membrane potentials.

P. Dean, E. K. Matthews, 1968, British journal of pharmacology.

Chemical genomics: a challenge for de novo drug design

P. Dean, 2007, Molecular biotechnology.

A branch-and-bound method for optimal atom-type assignment in de novo ligand design

Philip M. Dean, Nikolay P. Todorov, N. P. Todorov, 1998, J. Comput. Aided Mol. Des..

slate: A method for the superposition of flexible ligands

Philip M. Dean, James E. J. Mills, Iwan J. P. de Esch, 2001, J. Comput. Aided Mol. Des..

Design criteria for molecular mimics of fragments of the β-turn. 1. Cα atom analysis

Philip M. Dean, S. L. Garland, P. Dean, 1999, J. Comput. Aided Mol. Des..

Calcium-ion binding to the chromaffin-granule surface

P. Dean, E. Matthews, 1974 .

Electrical Activity in Pancreatic Islet Cells

P. Dean, E. Matthews, P. M. DEAN, 1968, Nature.

The London-Van der Waals attraction constant of secretory granules and its significance.

P. Dean, E. Matthews, 1975, Journal of theoretical biology.

Computer modelling of drug-receptor interactions

P. Dean, 1982 .

Electrostatic components of drug-receptor recognition. I. Structural and sequence analogues of DNA polynucleotides.

P. Dean, L. P. Wakelin, L. Wakelin, 1980, Proceedings of the Royal Society of London. Series B, Biological sciences.

The docking manoeuvre at a drug receptor: a quantum mechanical study of intercalative attack of ethidium and its carboxylated derivative on a DNA fragment.

P. Dean, L. P. Wakelin, L. Wakelin, 1979, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

Electrostatic components of drug—receptor recognition. - II. The DNA-binding antibiotic actinomycin

P. Dean, L. P. Wakelin, L. Wakelin, 1980, Proceedings of the Royal Society of London. Series B. Biological Sciences.

Pancreatic acinar cells: measurement of membrane potential and miniature depolarization potentials

P M Dean, P. Dean, E K Matthews, 1972, The Journal of physiology.

Evaluation of a method for controlling molecular scaffold diversity in de novo ligand design

Philip M. Dean, Nikolay P. Todorov, N. P. Todorov, 1997, J. Comput. Aided Mol. Des..

Molecular structure matching by simulated annealing. I. A comparison between different cooling schedules

M. T. Barakat, Philip M. Dean, P. Dean, 1990, J. Comput. Aided Mol. Des..

Three-dimensional hydrogen-bond geometry and probability information from a crystal survey

Philip M. Dean, James E. J. Mills, P. Dean, 1996, J. Comput. Aided Mol. Des..

Industrial-scale, genomics-based drug design and discovery.

P M Dean, P. Dean, E. Zanders, 2001, Trends in biotechnology.

Computer-aided design of small molecules for chemical genomics.

Philip M Dean, P. Dean, 2005, Methods in molecular biology.

Defining molecular similarity and complementarity for drug design

P. M. Dean, P. Dean, 1995 .

Molecular Foundations of Drug-Receptor Interaction

P. Dean, Philip Michael Dean, 1987 .

Electrical activity in pancreatic islet cells: effect of ions

P M Dean, P. Dean, E K Matthews, 1970, The Journal of physiology.

Superposition of Flexible Ligands to Predict Positions of Receptor Hydrogen-Bonding Atoms

P. Dean, J. E. Mills, 2000 .

Design criteria for molecular mimics of fragments of the β-turn. 2. Cα–Cβ bond vector analysis

Philip M. Dean, S. L. Garland, P. Dean, 1999, J. Comput. Aided Mol. Des..

An automated method for predicting the positions of hydrogen-bonding atoms in binding sites

Philip M. Dean, James E. J. Mills, Tim D. J. Perkins, 1997, J. Comput. Aided Mol. Des..

Molecular surface-volume and property matching to superpose flexible dissimilar molecules

Philip M. Dean, James E. J. Mills, Tim D. J. Perkins, 1995, J. Comput. Aided Mol. Des..

Pancreatic islet cells: effects of monosaccharides, glycolytic intermediates and metabolic inhibitors on membrane potential and electrical activity.

P. Dean, E. K. Matthews, Y. Sakamoto, 1975, The Journal of physiology.

The atom assignment problem in automated de novo drug design. 4. Tests for site-directed fragment placement based on molecular complementarity

M. T. Barakat, Philip M. Dean, P. Dean, 1995, J. Comput. Aided Mol. Des..

The atom assignment problem in automated de novo drug design. 3. Algorithms for optimization of fragment placement onto 3D molecular graphs

M. T. Barakat, Philip M. Dean, P. Dean, 1995, J. Comput. Aided Mol. Des..

Electrostatic complementarity between proteins and ligands. 2. Ligand moieties

Philip M. Dean, P.-L. Chau, P. Dean, 1994, J. Comput. Aided Mol. Des..

Electrostatic complementarity between proteins and ligands. 3. Structural basis

Philip M. Dean, P.-L. Chau, P. Dean, 1994, J. Comput. Aided Mol. Des..

Electrostatic complementarity between proteins and ligands. 1. Charge disposition, dielectric and interface effects

Philip M. Dean, P.-L. Chau, P. Dean, 1994, J. Comput. Aided Mol. Des..

Hydration in drug design. 2. Influence of local site surface shape on water binding

Philip M. Dean, C. S. Poornima, P. Dean, 1995, J. Comput. Aided Mol. Des..

Hydration in drug design. 1. Multiple hydrogen-bonding features of water molecules in mediating protein-ligand interactions

Philip M. Dean, C. S. Poornima, P. Dean, 1995, J. Comput. Aided Mol. Des..

Automated site-directed drug design: a general algorithm for knowledge acquisition about hydrogen-bonding regions at protein surfaces

P M Dean, D J Danziger, P. Dean, 1989, Proceedings of the Royal Society of London. B. Biological Sciences.

A validation study on the practical use of automated de novo design

Philip M. Dean, Harald Mauser, Martin Stahl, 2002, J. Comput. Aided Mol. Des..

Hydration in drug design. 3. Conserved water molecules at the ligand-binding sites of homologous proteins

Philip M. Dean, C. S. Poornima, P. Dean, 1995, J. Comput. Aided Mol. Des..

Automated site-directed drug design: The generation of a basic set of fragments to be used for automated structure assembly

Philip M. Dean, P.-L. Chau, P. Dean, 1992, J. Comput. Aided Mol. Des..

Molecular recognition: blind-searching for regions of strong structural match on the surfaces of two dissimilar molecules

P.-L. Chau, P. M. Dean, P. Dean, 1988 .

New Perspectives in Drug Design

P. M. Dean, C. G. Newton, P. Dean, 1995 .

Pharmacogenomics and Drug Design

P. Dean, P. Gane, E. Zanders, 2006 .

Ultrastructural morphometry of the pancreatic β-cell

P. Dean, 1973, Diabetologia.

The kinetics of β-granule formation: A morphometric study

P. Dean, 1976, Diabetologia.

4.13 – De Novo Design

Philip M. Dean, N. P. Todorov, I. L. Alberts, 2007 .

Recent advances in drug design methods: where will they lead?

P M Dean, P. Dean, 1994, BioEssays : news and reviews in molecular, cellular and developmental biology.

The ionogenic nature of the secretory-granule membrane. Electrokinetic properties of isolated chromaffin granules.

P. Dean, R. Evans, E. Matthews, 1972, The Biochemical journal.

Automated site-directed drug design: the concept of spacer skeletons for primary structure generation

Richard A. Lewis, R A Lewis, P M Dean, 1989, Proceedings of the Royal Society of London. B. Biological Sciences.

The atom assignment problem in automated de novo drug design. 2. A method for molecular graph and fragment perception

M. T. Barakat, Philip M. Dean, P. Dean, 1995, J. Comput. Aided Mol. Des..

The atom assignment problem in automated de novo drug design. 1. Transferability of molecular fragment properties

M. T. Barakat, Philip M. Dean, P. Dean, 1995, J. Comput. Aided Mol. Des..

An exploration of a novel strategy for superposing several flexible molecules

Philip M. Dean, Tim D. J. Perkins, P. Dean, 1993, J. Comput. Aided Mol. Des..

Searching for molecular similarity between flexible molecules

P. M. Dean, T. D. J. Perkins, P. Dean, 1993 .

De novo drug design: integration of structure-based and ligand-based methods.

Philip M Dean, N. P. Todorov, David G Lloyd, 2004, Current opinion in drug discovery & development.

QUASI: A Novel Method for Simultaneous Superposition of Multiple Flexible Ligands and Virtual Screening Using Partial Similarity

Philip M. Dean, Iwan J. P. de Esch, Nikolay P. Todorov, 2007, J. Chem. Inf. Model..

WaterScore: a novel method for distinguishing between bound and displaceable water molecules in the crystal structure of the binding site of protein-ligand complexes

P. Dean, R. Mancera, A. García‐Sosa, 2003, Journal of molecular modeling.

The end of the beginning for genomic medicine

Edward Zanders, Philip Dean, P. Dean, 2001, Nature Biotechnology.