P. Ahlquist

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Inferring Host Gene Subnetworks Involved in Viral Replication

Mark Craven, Deborah Chasman, Brandi Gancarz, 2014, PLoS Comput. Biol..

Genome-Wide Analysis of Host Factors in Nodavirus RNA Replication

M. Newton, Q. He, Linhui Hao, 2014, PloS one.

Helicase and Capping Enzyme Active Site Mutations in Brome Mosaic Virus Protein 1a Cause Defects in Template Recruitment, Negative-Strand RNA Synthesis, and Viral RNA Capping

P. Ahlquist, T. Ahola, J. D. den Boon, 2000, Journal of Virology.

Yeast Lsm1p-7p/Pat1p Deadenylation-Dependent mRNA-Decapping Factors Are Required for Brome Mosaic Virus Genomic RNA Translation

Jianbo Chen, P. Ahlquist, A. Noueiry, 2003, Molecular and Cellular Biology.

Systematic Identification of Novel, Essential Host Genes Affecting Bromovirus RNA Replication

M. Newton, Q. He, Brandi Gancarz, 2011, PloS one.

Membrane-shaping host reticulon proteins play crucial roles in viral RNA replication compartment formation and function

P. Ahlquist, Xiaofeng Wang, Arturo Diaz, 2010, Proceedings of the National Academy of Sciences.

Interactions between Brome Mosaic Virus RNAs and Cytoplasmic Processing Bodies

P. Ahlquist, A. Noueiry, C. Beckham, 2007, Journal of Virology.

Membrane Synthesis, Specific Lipid Requirements, and Localized Lipid Composition Changes Associated with a Positive-Strand RNA Virus RNA Replication Protein

P. Ahlquist, Wai-ming Lee, 2003, Journal of Virology.

Brome Mosaic Virus RNA Replication Proteins 1a and 2a Colocalize and 1a Independently Localizes on the Yeast Endoplasmic Reticulum

P. Ahlquist, M. Restrepo-Hartwig, 1999, Journal of Virology.

Systematic, genome-wide identification of host genes affecting replication of a positive-strand RNA virus

P. Ahlquist, B. Lindenbach, D. Kushner, 2003, Proceedings of the National Academy of Sciences of the United States of America.

An Amphipathic α-Helix Controls Multiple Roles of Brome Mosaic Virus Protein 1a in RNA Replication Complex Assembly and Function

R. Andino, P. Ahlquist, Xiaofeng Wang, 2009, PLoS pathogens.

Intersection of the Multivesicular Body Pathway and Lipid Homeostasis in RNA Replication by a Positive-Strand RNA Virus

Brandi Gancarz, Linhui Hao, P. Ahlquist, 2011, Journal of Virology.

Mutation of Host dnaJ Homolog Inhibits Brome Mosaic Virus Negative-Strand RNA Synthesis

Yuriko Tomita, P. Ahlquist, J. Díez, 2003, Journal of Virology.

A positive-strand RNA virus replication complex parallels form and function of retrovirus capsids.

Jianbo Chen, P. Ahlquist, J. D. den Boon, 2002, Molecular cell.

Host Acyl Coenzyme A Binding Protein Regulates Replication Complex Assembly and Activity of a Positive-Strand RNA Virus

P. Ahlquist, Xiaofeng Wang, Arturo Diaz, 2012, Journal of Virology.

Drosophila RNAi screen identifies host genes important for influenza virus replication

M. Newton, Tokiko Watanabe, Y. Kawaoka, 2008, Nature.

Subdomain cryo-EM structure of nodaviral replication protein A crown complex provides mechanistic insights into RNA genome replication

P. Ahlquist, J. D. den Boon, H. Zhan, 2020, Proceedings of the National Academy of Sciences.

Protein-protein interactions and glycerophospholipids in bromovirus and nodavirus RNA replication.

P. Ahlquist, P. Kaesberg, C. Kao, 1994, Archives of virology. Supplementum.

Random-set methods identify distinct aspects of the enrichment signal in gene-set analysis

M. Newton, F. Quintana, P. Ahlquist, 2007, 0708.4350.

Molecular transitions from papillomavirus infection to cervical precancer and cancer: Role of stromal estrogen receptor signaling

M. Newton, M. Sherman, M. Schiffman, 2015, Proceedings of the National Academy of Sciences.

Fundamental differences in cell cycle deregulation in human papillomavirus-positive and human papillomavirus-negative head/neck and cervical cancers.

M. Newton, C. Marsit, C. Woodworth, 2007, Cancer research.

Genome-wide expression profiling reveals EBV-associated inhibition of MHC class I expression in nasopharyngeal carcinoma.

M. Newton, D. B. Dahl, Chien-Jen Chen, 2006, Cancer research.

Genes Involved in DNA Repair and Nitrosamine Metabolism and Those Located on Chromosome 14q32 Are Dysregulated in Nasopharyngeal Carcinoma

M. Newton, Chien-Jen Chen, L. Dodd, 2006, Cancer Epidemiology Biomarkers & Prevention.

Determination of the length distribution of poly(A) at the 3' terminus of the virion RNAs of EMC virus, poliovirus, rhinovirus, RAV-61 and CPMV and of mouse globin mRNA.

P. Ahlquist, P. Kaesberg, 1979, Nucleic acids research.

Near identity of 3′ RNA secondary structure in bromoviruses and cucumber mosaic virus

P. Ahlquist, P. Kaesberg, R. Dasgupta, 1981, Cell.

Structural analysis and modeling reveals new mechanisms governing ESCRT-III spiral filament assembly

Julie C. Mitchell, Q. Cui, P. Ahlquist, 2014, The Journal of cell biology.

Cytoplasmic Viral Replication Complexes

Paul Ahlquist, P. Ahlquist, J. D. den Boon, 2010, Cell Host & Microbe.

CARM1 methylates chromatin remodeling factor BAF155 to enhance tumor progression and metastasis.

Wei Huang, Paul Ahlquist, Wei Xu, 2014, Cancer cell.

Explaining Effects of Host Gene Knockouts on Brome Mosaic Virus Replication

Mark Craven, Deborah Chasman, Brandi Gancarz, 2009 .

Host Factors in Positive-Strand RNA Virus Genome Replication

Paul Ahlquist, P. Ahlquist, B. Dye, 2003, Journal of Virology.

RNA-controlled polymorphism in the in vivo assembly of 180-subunit and 120-subunit virions from a single capsid protein.

P. Ahlquist, T. Baker, N. Olson, 1999, Proceedings of the National Academy of Sciences of the United States of America.

Bromovirus RNA Replication and Host Specificity

P. Ahlquist, M. Janda, W. Dejong, 1991 .

A mutant allele of essential, general translation initiation factor DED1 selectively inhibits translation of a viral mRNA.

Jianbo Chen, P. Ahlquist, A. Noueiry, 2000, Proceedings of the National Academy of Sciences of the United States of America.

Three-Dimensional Analysis of a Viral RNA Replication Complex Reveals a Virus-Induced Mini-Organelle

Paul Ahlquist, Mark H Ellisman, David J. Miller, 2007, PLoS biology.

Cryo-electron microscopy of nodavirus RNA replication organelles illuminates positive-strand RNA virus genome replication

P. Ahlquist, J. D. den Boon, H. Zhan, 2021, Current Opinion in Virology.

Coronavirus dons a new crown

P. Ahlquist, Nuruddin Unchwaniwala, 2020, Science.

Engineered Retargeting of Viral RNA Replication Complexes to an Alternative Intracellular Membrane

David J. Miller, P. Ahlquist, B. Dye, 2003, Journal of Virology.

DNA-Directed Expression of an Animal Virus RNA for Replication-Dependent Colony Formation in Saccharomyces cerevisiae

P. Ahlquist, L. A. Ball, B. Price, 2002, Journal of Virology.

Involvement of host cellular multivesicular body functions in hepatitis B virus budding

Tokiko Watanabe, P. Ahlquist, Ericka M Sorensen, 2007, Proceedings of the National Academy of Sciences.

Sequence of the 3' untranslated region of brome mosaic virus coat protein messenger RNA.

P. Ahlquist, P. Kaesberg, R. Dasgupta, 1980, Virology.

Human papillomavirus oncogenes reprogram the cervical cancer microenvironment independently of and synergistically with estrogen

D. Beebe, P. Ahlquist, J. D. den Boon, 2017, Proceedings of the National Academy of Sciences.

Sulfonation pathway inhibitors block reactivation of latent HIV-1.

John A. Young, C. Spina, P. Ahlquist, 2014, Virology.

cis-acting sequences required for in vivo amplification of genomic RNA3 are organized differently in related bromoviruses.

P. Ahlquist, R. Allison, R. F. Pacha, 1990, Virology.

Bromovirus movement protein genes play a crucial role in host specificity

P. Ahlquist, M. Janda, K. Mise, 1993, Journal of virology.

Ultra-high mass multimer analysis of protein-1a capping domains by a silicon nanomembrane detector.

D. Deterra, R. Blick, P. Ahlquist, 2017, Journal of proteomics.

Defined mutations in a small region of the brome mosaic virus 2 gene cause diverse temperature-sensitive RNA replication phenotypes

D. Richards, P. Ahlquist, P. Kroner, 1989, Journal of Virology.

Effects ofDeletions intheN-Terminal BasicArm ofBromeMosaic VirusCoatProtein on RNA Packaging andSystemic Infection

P. Ahlquist, R. Sacher, 1989 .

Imported large subunits of ribulose bisphosphate carboxylase/oxygenase, but not imported β‐ATP synthase subunits, are assembled into holoenzyme in isolated chloroplasts

P. Ahlquist, K. Keegstra, A. Gatenby, 1988, The EMBO journal.

Effects of coat protein mutations and reduced movement protein expression on infection spread by cowpea chlorotic mottle virus and its hybrid derivatives.

P. Ahlquist, K. Mise, A. Chu, 1997, Virology.

Characterization and engineering of sequences controlling in vivo synthesis of brome mosaic virus subgenomic RNA

P. Ahlquist, R. French, 1988, Journal of virology.

Ball cerevisiae Saccharomyces Colony Formation in Virus RNA for Replication-Dependent DNA-Directed Expression of an Animal

P. Ahlquist, L. A. Ball, B. Price, 2002 .

HIV RGB: Automated Single-Cell Analysis of HIV-1 Rev-Dependent RNA Nuclear Export and Translation Using Image Processing in KNIME

Ginger M. Pocock, Edward L. Evans, P. Ahlquist, 2022, Viruses.

Chloroplast import characteristics of chimeric proteins

P. Ahlquist, K. Keegstra, A. Gatenby, 2004, Plant Molecular Biology.

Substantial portions of the 5' and intercistronic noncoding regions of cowpea chlorotic mottle virus RNA3 are dispensable for systemic infection but influence viral competitiveness and infection pathology.

P. Ahlquist, R. F. Pacha, 1992, Virology.

MicroRNA 29c is down-regulated in nasopharyngeal carcinomas, up-regulating mRNAs encoding extracellular matrix proteins

Paul Ahlquist, Stephen A. Stanhope, Srikumar Sengupta, 2008, Proceedings of the National Academy of Sciences.

CARM1 Methylates Chromatin Remodeling Factor BAF155 to Enhance Tumor Progression and Metastasis.

P. Ahlquist, W. Cai, Menggang Yu, 2016, Cancer cell.

Novel antivirals inhibit early steps in HPV infection.

S. Lank, P. Ahlquist, P. Lambert, 2012, Antiviral research.

Modulation of replication, aminoacylation and adenylation in vitro and infectivity in vivo of BMV RNAs containing deletions within the multifunctional 3′ end.

P. Ahlquist, P. Kaesberg, T. Dreher, 1986, The EMBO journal.

Cellular Transcription Factor ZASC1 Regulates Murine Leukemia Virus Transcription

Paul Ahlquist, P. Ahlquist, J. Young, 2010, Journal of Virology.

Mutations in the helicase-like domain of protein 1a alter the sites of RNA-RNA recombination in brome mosaic virus

P. Ahlquist, P. D. Nagy, J. Bujarski, 1995, Journal of virology.

Deletion analysis of brome mosaic virus 2a protein: effects on RNA replication and systemic spread

P. Ahlquist, P. Traynor, B. Young, 1991, Journal of virology.

Diverse activities of viral cis-acting RNA regulatory elements revealed using multicolor, long-term, single-cell imaging

Ginger M. Pocock, K. Eliceiri, P. Ahlquist, 2017, Molecular biology of the cell.

RNA-Dependent RNA Polymerases, Viruses, and RNA Silencing

Paul Ahlquist, P. Ahlquist, 2002, Science.

Orphan Nuclear Receptor PNR/NR2E3 Stimulates p53 Functions by Enhancing p53 Acetylation

P. Ahlquist, P. Lambert, W. Xu, 2011, Molecular and Cellular Biology.

Bean golden mosaic geminivirus type II isolates from the Dominican Republic and Guatemala: nucleotide sequences, infectious pseudorecombinants, and phylogenetic relationships.

P. Ahlquist, R. Gilbertson, J. C. Faria, 1994 .

Genetic diversity in geminiviruses causing bean golden mosaic disease: The nucleotide sequence of the infectious cloned DNA components of a Brazilian isolate of bean golden mosaic geminivirus.

P. Ahlquist, R. Gilbertson, J. C. Faria, 1993 .

Establishment of Human Papillomavirus Infection Requires Cell Cycle Progression

S. Lank, P. Ahlquist, P. Lambert, 2009, PLoS pathogens.

Isolation of Cell Lines That Show Novel, Murine Leukemia Virus-Specific Blocks to Early Steps of Retroviral Replication

P. Ahlquist, J. Young, K. Bradley, 2005, Journal of Virology.

Production of infectious human papillomavirus independently of viral replication and epithelial cell differentiation.

P. Ahlquist, P. Lambert, D. Pyeon, 2005, Proceedings of the National Academy of Sciences of the United States of America.

ZASC1 Stimulates HIV-1 Transcription Elongation by Recruiting P-TEFb and TAT to the LTR Promoter

P. Ahlquist, J. Young, James W Bruce, 2013, PLoS pathogens.

Alternate, virus-induced membrane rearrangements support positive-strand RNA virus genome replication.

Jianbo Chen, P. Ahlquist, Wai-ming Lee, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Top 10 plant viruses in molecular plant pathology.

Thierry Candresse, Paul Ahlquist, Barbara Hohn, 2011, Molecular plant pathology.

Molecular studies of brome mosaic virus using infectious transcripts from cloned cDNA.

P. Ahlquist, J. Bujarski, R. French, 1987, Advances in virus research.

Identification of Sequences in Brome Mosaic Virus Replicase Protein 1a That Mediate Association with Endoplasmic Reticulum Membranes

Jianbo Chen, P. Ahlquist, J. D. den Boon, 2001, Journal of Virology.

Brome mosaic virus RNA replication protein 1a dramatically increases in vivo stability but not translation of viral genomic RNA3.

P. Ahlquist, M. Janda, 1998, Proceedings of the National Academy of Sciences of the United States of America.

Two-step binding of eukaryotic ribosomes to brome mosaic virus RNA3

P. Ahlquist, P. Kaesberg, D. S. Shih, 1979, Nature.

Brome Mosaic Virus

P. Ahlquist, X. Wang, 2008, Encyclopedia of Virology.

Identification and characterization of a host protein required for efficient template selection in viral RNA replication.

P. Ahlquist, J. Díez, M. Ishikawa, 2000, Proceedings of the National Academy of Sciences of the United States of America.

Yeast mutations in multiple complementation groups inhibit brome mosaic virus RNA replication and transcription and perturb regulated expression of the viral polymerase-like gene.

P. Ahlquist, J. Díez, M. Restrepo-Hartwig, 1997, Proceedings of the National Academy of Sciences of the United States of America.

Sindbis virus proteins nsP1 and nsP2 contain homology to nonstructural proteins from several RNA plant viruses

J. H. Strauss, E. G. Strauss, C. Rice, 1985, Journal of virology.

P. Ahlquist, P. Kaesberg, J. Haseloff, 1984, Proceedings of the National Academy of Sciences of the United States of America.

Complete nucleotide sequence of brome mosaic virus RNA3.

P. Ahlquist, P. Kaesberg, V. Luckow, 1981, Journal of molecular biology.

The polymerase-like core of brome mosaic virus 2a protein, lacking a region interacting with viral 1a protein in vitro, maintains activity and 1a selectivity in RNA replication

P. Ahlquist, N. Lin, E. Smirnyagina, 1996, Journal of virology.

Nucleotide sequence of the brome mosaic virus genome and its implications for viral replication.

P. Ahlquist, P. Kaesberg, R. Dasgupta, 1984, Journal of molecular biology.

cDNA cloning and in vitro transcription of the complete brome mosaic virus genome

P. Ahlquist, M. Janda, 1984, Molecular and cellular biology.

Regeneration of a functional RNA virus genome by recombination between deletion mutants and requirement for cowpea chlorotic mottle virus 3a and coat genes for systemic infection.

P. Ahlquist, R. Allison, C. Thompson, 1990, Proceedings of the National Academy of Sciences of the United States of America.

The brome mosaic virus RNA3 intergenic replication enhancer folds to mimic a tRNA TpsiC-stem loop and is modified in vivo.

P. Ahlquist, T. Baumstark, 2001, RNA.

cis-Acting Signals in Bromovirus RNA Replication and Gene Expression: Networking with Viral Proteins and Host Factors

P. Ahlquist, M. Sullivan, 1997 .

Systematic identification of Ctr9 regulome in ERα-positive breast cancer

P. Ahlquist, Xuehua Zhong, Mark A Horswill, 2016, BMC Genomics.

Statistical Use of Argonaute Expression and RISC Assembly in microRNA Target Identification

Paul Ahlquist, Stephen A. Stanhope, Srikumar Sengupta, 2009, PLoS Comput. Biol..

High efficiency T7 polymerase synthesis of infectious RNA from cloned brome mosaic virus cdna and effects of 5' extensions on transcript infectivity.

P. Ahlquist, M. Janda, R. French, 1987, Virology.

Detecting differential gene expression with a semiparametric hierarchical mixture method.

Deepayan Sarkar, Paul Ahlquist, Michael A Newton, 2004, Biostatistics.

DNA-Directed Expression of Functional Flock House Virus RNA1 Derivatives in Saccharomyces cerevisiae, Heterologous Gene Expression, and Selective Effects on Subgenomic mRNA Synthesis

P. Ahlquist, B. Price, M. Roeder, 2000, Journal of Virology.

RNA-dependent replication, transcription, and persistence of brome mosaic virus RNA replicons in S. cerevisiae

P. Ahlquist, M. Janda, 1993, Cell.

Transmembrane redox regulation of genome replication functions in positive-strand RNA viruses.

P. Ahlquist, M. Nishikiori, 2020, Current opinion in virology.

HIV-1 and M-PMV RNA Nuclear Export Elements Program Viral Genomes for Distinct Cytoplasmic Trafficking Behaviors

Ginger M. Pocock, P. Ahlquist, N. Sherer, 2016, PLoS pathogens.

Biological activities of hybrid RNAs generated by 3'-end exchanges between tobacco mosaic and brome mosaic viruses

P. Ahlquist, M. Ishikawa, T. Meshi, 1991, Journal of virology.

Multicomponent RNA plant virus infection derived from cloned viral cDNA.

P. Ahlquist, M. Janda, L. S. Loesch-Fries, 1984, Proceedings of the National Academy of Sciences of the United States of America.

The Host Cell Sulfonation Pathway Contributes to Retroviral Infection at a Step Coincident with Provirus Establishment

P. Ahlquist, J. Young, James W Bruce, 2008, PLoS pathogens.

Effects of deletions in the N-terminal basic arm of brome mosaic virus coat protein on RNA packaging and systemic infection

P. Ahlquist, R. Sacher, 1989, Journal of virology.

Intermolecular RNA Recombination Occurs at Different Frequencies in Alternate Forms of Brome Mosaic Virus RNA Replication Compartments

P. Ahlquist, Arturo Diaz, H. Garcia-Ruiz, 2018, Viruses.

Brome Mosaic Virus 1a Nucleoside Triphosphatase/Helicase Domain Plays Crucial Roles in Recruiting RNA Replication Templates

Tokiko Watanabe, P. Ahlquist, Xiaofeng Wang, 2005, Journal of Virology.

ZASC1 knockout mice exhibit an early bone marrow-specific defect in murine leukemia virus replication

S. Seidel, John A. Young, P. Ahlquist, 2013, Virology Journal.

Title ZASC 1 knockout mice exhibit an early bone marrow-specific defect in murine leukemia virus replication

S. Seidel, John A. Young, P. Ahlquist, 2013 .

Brome mosaic virus helicase- and polymerase-like proteins colocalize on the endoplasmic reticulum at sites of viral RNA synthesis

P. Ahlquist, M. Restrepo-Hartwig, 1996, Journal of virology.

In Vivo Self-Interaction of Nodavirus RNA Replicase Protein A Revealed by Fluorescence Resonance Energy Transfer

David J. Miller, P. Ahlquist, B. Dye, 2005, Journal of Virology.

Biochemical and genetic analyses of the interaction between the helicase-like and polymerase-like proteins of the brome mosaic virus.

P. Ahlquist, C. Kao, N. Tang, 1995, Virology.

Brome mosaic virus RNA replication proteins 1a and 2a from a complex in vitro

P. Ahlquist, C. Kao, R. Hershberger, 1992, Journal of virology.

Bromovirus RNA replication and transcription.

P. Ahlquist, 1992, Current opinion in genetics & development.

Analysis of the role of brome mosaic virus 1a protein domains in RNA replication, using linker insertion mutagenesis

P. Ahlquist, P. Kroner, B. Young, 1990, Journal of virology.

Systematic Analyses of the Cytotoxic Effects of Compound 11a, a Putative Synthetic Agonist of Photoreceptor-Specific Nuclear Receptor (PNR), in Cancer Cell Lines

P. Ahlquist, W. Xu, Zibo Zhao, 2013, PloS one.

Cooperativity among Rev-Associated Nuclear Export Signals Regulates HIV-1 Gene Expression and Is a Determinant of Virus Species Tropism

Paul Ahlquist, Johannes Schindelin, Ginger M. Pocock, 2014, Journal of Virology.

Parallels among positive-strand RNA viruses, reverse-transcribing viruses and double-stranded RNA viruses

P. Ahlquist, 2006, Nature Reviews Microbiology.

Role of host reticulon proteins in rearranging membranes for positive-strand RNA virus replication

P. Ahlquist, Arturo Diaz, 2012, Current Opinion in Microbiology.

Whitefly transmission and efficient ssDNA accumulation of bean golden mosaic geminivirus require functional coat protein.

P. Ahlquist, J. Beaver, D. Maxwell, 1994, Virology.

Mutual Interference between Genomic RNA Replication and Subgenomic mRNA Transcription in Brome Mosaic Virus

Tokiko Watanabe, P. Ahlquist, V. Grdzelishvili, 2005, Journal of Virology.

Putative RNA Capping Activities Encoded by Brome Mosaic Virus: Methylation and Covalent Binding of Guanylate by Replicase Protein 1a

P. Ahlquist, T. Ahola, 1999, Journal of Virology.

Organelle-like membrane compartmentalization of positive-strand RNA virus replication factories.

P. Ahlquist, J. D. den Boon, 2010, Annual review of microbiology.

Brome Mosaic Virus Protein 1a Recruits Viral RNA2 to RNA Replication through a 5′ Proximal RNA2 Signal

Jianbo Chen, P. Ahlquist, A. Noueiry, 2001, Journal of Virology.

Nodavirus RNA replication crown architecture reveals proto-crown precursor and viral protein A conformational switching

P. Ahlquist, J. D. den Boon, H. Zhan, 2022, bioRxiv.

ZBTB2 represses HIV-1 transcription and is regulated by HIV-1 Vpr and cellular DNA damage responses

Edward L. Evans, P. Ahlquist, N. Sherer, 2021, PLoS pathogens.

Human cytomegalovirus lytic infection inhibits replication-dependent histone synthesis and requires stem loop binding protein function

P. Ahlquist, R. Kalejta, S. Terhune, 2022, Proceedings of the National Academy of Sciences of the United States of America.

Limited Agreement of Independent RNAi Screens for Virus-Required Host Genes Owes More to False-Negative than False-Positive Factors

Mark Craven, Linhui Hao, Paul Ahlquist, 2013, PLoS Comput. Biol..

Gene amplification and expression by RNA viruses and potential for further application to plant gene transfer

P. Ahlquist, R. F. Pacha, 1990 .

Bacterial Gene Inserted in an Engineered RNA Virus: Efficient Expression in Monocotyledonous Plant Cells

P. Ahlquist, M. Janda, R. French, 1986, Science.

Hybrid brome mosaic virus RNAs express and are packaged in tobacco mosaic virus coat protein in vivo.

P. Ahlquist, R. Sacher, R. French, 1988, Virology.

Infectious in vitro transcripts from cowpea chlorotic mottle virus cDNA clones and exchange of individual RNA components with brome mosaic virus

P. Ahlquist, M. Janda, R. Allison, 1988, Journal of virology.

Intercistronic as well as terminal sequences are required for efficient amplification of brome mosaic virus RNA3

P. Ahlquist, R. French, 1987, Journal of virology.

The Cellular Decapping Activators LSm1, Pat1, and Dhh1 Control the Ratio of Subgenomic to Genomic Flock House Virus RNAs

P. Ahlquist, J. Díez, M. Giménez-Barcons, 2013, Journal of Virology.

Host Deadenylation-Dependent mRNA Decapping Factors Are Required for a Key Step in Brome Mosaic Virus RNA Replication

P. Ahlquist, A. Noueiry, J. Díez, 2006, Journal of Virology.

Organelle luminal dependence of (+)strand RNA virus replication reveals a hidden druggable target

P. Ahlquist, M. Nishikiori, 2018, Science Advances.

Mutation of Host Δ9 Fatty Acid Desaturase Inhibits Brome Mosaic Virus RNA Replication between Template Recognition and RNA Synthesis

P. Ahlquist, Wai-ming Lee, Masayuki Ishikawa, 2001, Journal of Virology.

Filling a GAP(DH) in asymmetric viral RNA synthesis.

P. Ahlquist, Xiaofeng Wang, 2008, Cell host & microbe.

Augmenting subnetwork inference with information extracted from the scientific literature

Mark W. Craven, Deborah Chasman, Hoifung Poon, 2019, PLoS Comput. Biol..

Brome Mosaic Virus RNA Replication Proteins 1a and 2a Colocalize and 1a Independently Localizes on the Yeast Endoplasmic Reticulum

P. Ahlquist, M. Restrepo-Hartwig, 1999, Journal of Virology.

In vivo DNA expression of functional brome mosaic virus RNA replicons in Saccharomyces cerevisiae

P. Ahlquist, M. Ishikawa, M. Janda, 1997, Journal of virology.

Reproductive toxicology. Acetaminophen.

David J. Miller, Mark Ellisman, G. Perkins, 1997, Environmental health perspectives.

Brome Mosaic Virus Polymerase-Like Protein 2a Is Directed to the Endoplasmic Reticulum by Helicase-Like Viral Protein 1a

Jianbo Chen, P. Ahlquist, 2000, Journal of Virology.

A Brome Mosaic Virus Intergenic RNA3 Replication Signal Functions with Viral Replication Protein 1a To Dramatically Stabilize RNA In Vivo

P. Ahlquist, M. Sullivan, 1999, Journal of Virology.

Host-specific alterations in viral RNA accumulation and infection spread in a brome mosaic virus isolate with an expanded host range

P. Ahlquist, W. de Jong, 1995, Journal of virology.

Bromovirus RNA replication and transcription require compatibility between the polymerase- and helicase-like viral RNA synthesis proteins

P. Ahlquist, M. Janda, P. Kroner, 1993, Journal of virology.

Identification of the domains required for direct interaction of the helicase-like and polymerase-like RNA replication proteins of brome mosaic virus

P. Ahlquist, C. Kao, 1992, Journal of virology.

Nodavirus RNA Replication Protein A Induces Membrane Association of Genomic RNA

P. Ahlquist, Priscilla M. Van Wynsberghe, Hau-Ren Chen, 2007, Journal of Virology.

Flock House Virus RNA Replicates on Outer Mitochondrial Membranes in Drosophila Cells

Paul Ahlquist, David J. Miller, David J. Miller, 2001, Journal of Virology.

An Alternate Pathway for Recruiting Template RNA to the Brome Mosaic Virus RNA Replication Complex

Jianbo Chen, P. Ahlquist, A. Noueiry, 2003, Journal of Virology.

A single codon change in a conserved motif of a bromovirus movement protein gene confers compatibility with a new host.

P. Ahlquist, Y. Fujita, I. Furusawa, 1996, Virology.

Sequence of cowpea chlorotic mottle virus RNAs 2 and 3 and evidence of a recombination event during bromovirus evolution.

P. Ahlquist, M. Janda, R. Allison, 1989, Virology.

Formation of brome mosaic virus RNA-dependent RNA polymerase in yeast requires coexpression of viral proteins and viral RNA.

P. Ahlquist, M. Ishikawa, M. Janda, 1995, Proceedings of the National Academy of Sciences of the United States of America.

In vitro transcription of infectious viral RNA from cloned cDNA

P. Ahlquist, 1986 .

An RNA-dependent RNA polymerase activity associated with virions of tomato spotted wilt virus, a plant- and insect-infecting bunyavirus.

P. Ahlquist, S. Adkins, R. Quadt, 1995, Virology.

Characterization of a host protein associated with brome mosaic virus RNA-dependent RNA polymerase.

P. Ahlquist, C. Kao, R. Hershberger, 1993, Proceedings of the National Academy of Sciences of the United States of America.

Coding changes in the 3a cell-to-cell movement gene can extend the host range of brome mosaic virus systemic infection.

P. Ahlquist, A. Chu, W. de Jong, 1995, Virology.

Host-specificity restriction by bromovirus cell-to-cell movement protein occurs after initial cell-to-cell spread of infection in nonhost plants.

P. Ahlquist, K. Mise, 1995, Virology.

Brome mosaic virus RNA replication: revealing the role of the host in RNA virus replication.

P. Ahlquist, A. Noueiry, 2003, Annual review of phytopathology.

Complete nucleotide sequences of the infectious cloned DNAs of bean dwarf mosaic geminivirus

P. Ahlquist, R. Gilbertson, D. Maxwell, 1993 .

Cloning of the complete DNA genomes of four bean-infecting geminiviruses and determining their infectivity by electric discharge particle acceleration

P. Ahlquist, R. Gilbertson, J. C. Faria, 1991 .

High-throughput isolation of Saccharomyces cerevisiae RNA.

Linhui Hao, P. Ahlquist, B. Dye, 2005, BioTechniques.

Variability of RNA genomes

E. Domingo, J. Holland, P. Ahlquist, 1988 .

Cowpea chlorotic mottle bromovirus replication proteins support template-selective RNA replication in Saccharomyces cerevisiae

Bryan S. Sibert, P. Ahlquist, Xiaofeng Wang, 2018, PloS one.

Long-Distance Base Pairing in Flock House Virus RNA1 Regulates Subgenomic RNA3 Synthesis and RNA2 Replication

P. Ahlquist, B. Lindenbach, J. Sgro, 2002, Journal of Virology.

Molecular Biology of Bromovirus Replication and Host Specificity

P. Ahlquist, M. Janda, W. Dejong, 1990 .

Bromovirus RNA Replication Compartment Formation Requires Concerted Action of 1a's Self-Interacting RNA Capping and Helicase Domains

P. Ahlquist, Arturo Diaz, Andreas Gallei, 2011, Journal of Virology.

Nodavirus-Induced Membrane Rearrangement in Replication Complex Assembly Requires Replicase Protein A, RNA Templates, and Polymerase Activity

P. Ahlquist, B. G. Kopek, P. Friesen, 2010, Journal of Virology.

Engineered Retargeting of Viral RNA Replication Complexes to an Alternative Intracellular Membrane

David J. Miller, P. Ahlquist, B. Dye, 2003, Journal of Virology.

Flock House Virus RNA Polymerase Is a Transmembrane Protein with Amino-Terminal Sequences Sufficient for Mitochondrial Localization and Membrane Insertion

Paul Ahlquist, David J. Miller, P. Ahlquist, 2002, Journal of Virology.

Inducible Yeast System for Viral RNA Recombination Reveals Requirement for an RNA Replication Signal on Both Parental RNAs

P. Ahlquist, H. Garcia-Ruiz, 2006, Journal of Virology.

Complete replication of an animal virus and maintenance of expression vectors derived from it in Saccharomyces cerevisiae.

P. Ahlquist, R. Rueckert, B. Price, 1996, Proceedings of the National Academy of Sciences of the United States of America.

Detecting protein–protein interaction in live yeast by flow cytometry

P. Ahlquist, B. Dye, K. Schell, 2005, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

Active complete in vitro replication of nodavirus RNA requires glycerophospholipid.

P. Ahlquist, P. Kaesberg, S. Wu, 1992, Proceedings of the National Academy of Sciences of the United States of America.

5′ cis Elements Direct Nodavirus RNA1 Recruitment to Mitochondrial Sites of Replication Complex Formation

P. Ahlquist, Priscilla M. Van Wynsberghe, 2009, Journal of Virology.

Cryo-electron tomography reveals novel features of a viral RNA replication compartment

Paul Ahlquist, Marisa S Otegui, P. Ahlquist, 2017, eLife.

Virus Evolution: Fitting Lifestyles to a T

P. Ahlquist, 2005, Current Biology.

ESCRT-mediated vesicle concatenation in plant endosomes

Nathan D. Miller, A. Leier, P. Ahlquist, 2017, The Journal of cell biology.

Use of bromovirus RNA2 hybrids to map cis- and trans-acting functions in a conserved RNA replication gene

P. Ahlquist, P. Traynor, 1990, Journal of virology.

United States Patent, Number: 5,633,447: PLANT TISSUE COMPRISING A SUBGENOMIC PROMOTER

P. Ahlquist, R. French, 1997 .

Multifunctional Protein A Is the Only Viral Protein Required for Nodavirus RNA Replication Crown Formation

P. Ahlquist, J. D. den Boon, H. Zhan, 2022, Viruses.

Correction: Host ESCRT Proteins Are Required for Bromovirus RNA Replication Compartment Assembly and Function

P. Ahlquist, Xiaofeng Wang, Arturo Diaz, 2015, PLoS pathogens.

Chromosomal copy number alterations and HPV integration in cervical precancer and invasive cancer.

Keegan D. Korthauer, M. Newton, M. Sherman, 2016, Carcinogenesis.

Mutational analysis of a putative NTP-binding domain in the replication-associated protein (AC1) of bean golden mosaic geminivirus.

P. Ahlquist, R. Gilbertson, D. Maxwell, 1995, Virology.

Perturbing HIV-1 Ribosomal Frameshifting Frequency Reveals a cis Preference for Gag-Pol Incorporation into Assembling Virions

S. Butcher, P. Ahlquist, N. Sherer, 2021, Journal of virology.

Second-site mutations in the brome mosaic virus RNA3 intercistronic region partially suppress a defect in coat protein mRNA transcription.

P. Ahlquist, N. Chua, Y. Hsu, 1994, Virology.

Supplemental Information CARM 1 Methylates Chromatin Remodeling Factor BAF 155 to Enhance Tumor Progression and Metastasis

P. Ahlquist, W. Cai, Menggang Yu, 2013 .

Lack of Association between EBV and Breast Carcinoma

M. Newton, P. Ahlquist, J. D. den Boon, 2005, Cancer Epidemiology Biomarkers & Prevention.

Exploiting rodent cell blocks for intrinsic resistance to HIV-1 gene expression in human T cells

Edward L. Evans, P. Ahlquist, J. Hultquist, 2023, bioRxiv.

Molecular biology and molecular genetics of plant bromoviruses

P. Ahlquist, 1987 .

HIV-1 virological synapse formation enhances infection spread by dysregulating Aurora Kinase B

Chris S. Magnano, P. Ahlquist, J. Coon, 2023, PLoS pathogens.

Host ESCRT Proteins Are Required for Bromovirus RNA Replication Compartment Assembly and Function

P. Ahlquist, Xiaofeng Wang, Arturo Diaz, 2015, PLoS pathogens.

ESCRT components ISTL1 andLIP5 are required for tapetal function and pollen viability.

P. Ahlquist, J. Pennington, I. Molina, 2021, The Plant cell.

Systematic identification of Ctr9 regulome in ERα-positive breast cancer

P. Ahlquist, Xuehua Zhong, Wei Xu, 2016, BMC Genomics.

Replication Complex Formation Recruitment to Mitochondrial Sites of Elements Direct Nodavirus RNA1 cis ' 5

P. Ahlquist, Priscilla M. Van Wynsberghe, 2014 .

Use of bromovirus RNA3 hybrids to study template specificity in viral RNA amplification

P. Ahlquist, R. F. Pacha, 1991, Journal of virology.

Localization of the replicase recognition site within brome mosaic virus RNA by hybrid-arrested RNA synthesis

P. Ahlquist, P. Kaesberg, T. Hall, 2004, Plant Molecular Biology.

Top 10 plant viruses in molecular plant pathology.

P. Ahlquist, P. Palukaitis, G. Foster, 2011, Molecular plant pathology.

Genome-wide expression profiling reveals EBV-associated inhibition of MHC class I expression in nasopharyngeal carcinoma.

M. Newton, D. B. Dahl, Chien-Jen Chen, 2006, Cancer research.

Extreme heterogeneity in populations of vesicular stomatitis virus

J. Holland, P. Ahlquist, D. Steinhauer, 1989, Journal of virology.