Irma Martínez-Flores

发表

BioPAX – A community standard for pathway data sharing

Gary D Bader, Alexander R. Pico, Suzanne M. Paley, 2010, Nature Biotechnology.

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

Julio Collado-Vides, César Bonavides-Martínez, Socorro Gama-Castro, 2010, Nucleic Acids Res..

Bioinformatics Resources for the Study of Gene Regulation in Bacteria

J. Collado-Vides, Irma Martínez-Flores, V. Jiménez-Jacinto, 2008, Journal of bacteriology.

Anti-Sigma Factors in E. coli: Common Regulatory Mechanisms Controlling Sigma Factors Availability

Irma Martínez-Flores, Irma Martínez-Flores, J. A. Freyre-González, 2013, Current genomics.

The ompB Operon Partially Determines Differential Expression of OmpC in Salmonella typhi andEscherichia coli

Irma Martínez-Flores, R. Cano, E. Calva, 1999, Journal of bacteriology.

Genomic diversity of prevalent Staphylococcus epidermidis multidrug-resistant strains isolated from a Children’s Hospital in México City in an eight-years survey

Irma Martínez-Flores, E. Silva-Herzog, X. Soberón, 2019, PeerJ.

The transcriptional regulator SsrB is involved in a molecular switch controlling virulence lifestyles of Salmonella

Irma Martínez-Flores, H. Salgado, B. Coombes, 2017, PLoS pathogens.

In silico clustering of Salmonella global gene expression data reveals novel genes co-regulated with the SPI-1 virulence genes through HilD

J. Collado-Vides, Irma Martínez-Flores, H. Salgado, 2016, Scientific Reports.

Phylogenomic Rhizobium Species Are Structured by a Continuum of Diversity and Genomic Clusters

Irma Martínez-Flores, P. Bustos, E. Martínez-Romero, 2019, Front. Microbiol..

Erratum: The BioPAX community standard for pathway data sharing (Nat. Biotechnol. (2010) 28 (935-942)

Gary D. Bader, Frank Schacherer, Edgar Wingender, 2010 .

The BioPAX community standard for pathway data sharing (Nature Biotechnology (2010) 28, (935-942))

Kei-Hoi Cheung, Gary D. Bader, Frank Schacherer, 2012 .

BioPAX – A community standard for pathway data sharing

Gary D Bader, Alexander R. Pico, Joanne S. Luciano, 2010, Nature Biotechnology.

Genomic analysis of prevalent Staphylococcus epidermidis multidrug-resistant strains isolated during eight years in a single children hospital in México City.

Irma Martínez-Flores, E. Silva-Herzog, X. Soberón, 2019 .

Novel Porin genes and modes of Porin regulation in Salmonella typhi

Irma Martínez-Flores, J. Puente, R. Cano, 1998 .

Automatic reconstruction of a bacterial regulatory network using Natural Language Processing

Julio Collado-Vides, Carlos Rodríguez Penagos, Heladia Salgado, 2007, BMC Bioinformatics.

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

Julio Collado-Vides, César Bonavides-Martínez, Socorro Gama-Castro, 2012, Nucleic Acids Res..

Genomic Analysis Reveals the Genetic Determinants Associated With Antibiotic Resistance in the Zoonotic Pathogen Campylobacter spp. Distributed Globally

Irma Martínez-Flores, Luis F. Lozano, R. I. Santamaría, 2020, Frontiers in Microbiology.

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond

Fabio Rinaldi, Julio Collado-Vides, César Bonavides-Martínez, 2015, Nucleic Acids Res..

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation

Julio Collado-Vides, César Bonavides-Martínez, Socorro Gama-Castro, 2007, Nucleic Acids Res..

Using RegulonDB, the Escherichia coli K‐12 Gene Regulatory Transcriptional Network Database

Irma Martínez-Flores, Julio Collado-Vides, Heladia Salgado, 2018, Current protocols in bioinformatics.

Extracting regulatory networks of Escherichia coli from RegulonDB.

Julio Collado-Vides, Heladia Salgado, Luis Muñiz-Rascado, 2012, Methods in molecular biology.

Expanding BioPAX format by integrating Gene Regulation

Julio Collado-Vides, Verónica Jiménez-Jacinto, Irma Martínez-Flores, 2010 .

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

Julio Collado-Vides, César Bonavides-Martínez, Socorro Gama-Castro, 2005, Nucleic Acids Res..

1 2 Genomic analysis of prevalent Staphylococcus epidermidis antibiotic multi-3 resistant isolated during eight years in a single children hospital in México 4 City 5 6 7

Irma Martínez-Flores, E. Silva-Herzog, P. Bustos, 2019 .

Analysis of the Frz signal transduction system of Myxococcus xanthus shows the importance of the conserved C‐terminal region of the cytoplasmic chemoreceptor FrzCD in sensing signals

H. Vlamakis, Irma Martínez-Flores, D. Zusman, 2004, Molecular microbiology.

In Silico Identification and Experimental Characterization of Regulatory Elements Controlling the Expression of the Salmonella csrB and csrC Genes

J. Collado-Vides, Irma Martínez-Flores, H. Salgado, 2013, Journal of bacteriology.

Genes csrC and csrB Salmonella Controlling the Expression of the Characterization of Regulatory Elements Identification and Experimental In Silico

J. Collado-Vides, Irma Martínez-Flores, H. Salgado, 2013 .

1 R ESEARCH P APERS 39 Expanding BioPAX format by integrating Gene Regulation

Irma Martínez-Flores, Alejandra López-Fuentes, 2015 .

Erratum: The BioPAX community standard for pathway data sharing (Nat. Biotechnol. (2010) 28 (935-942)

Kei-Hoi Cheung, Frank Schacherer, Edgar Wingender, 2010 .