V. Jiménez-Jacinto

发表

BioPAX – A community standard for pathway data sharing

Gary D Bader, Alexander R. Pico, Suzanne M. Paley, 2010, Nature Biotechnology.

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

Julio Collado-Vides, César Bonavides-Martínez, Socorro Gama-Castro, 2010, Nucleic Acids Res..

Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli

Araceli M. Huerta, J. Collado-Vides, V. Jiménez-Jacinto, 2009, PloS one.

Bioinformatics Resources for the Study of Gene Regulation in Bacteria

J. Collado-Vides, Irma Martínez-Flores, V. Jiménez-Jacinto, 2008, Journal of bacteriology.

Pattern Recognition Applied to the Analysis of Genomic Data and Its Association to Diseases

V. Jiménez-Jacinto, L. Gómez-Romero, Carlos-Francisco Méndez-Cruz, 2020 .

Environmental conditions and transcriptional regulation in Escherichia coli: a physiological integrative approach

Julio Collado-Vides, Socorro Gama-Castro, Verónica Jiménez-Jacinto, 2003, Biotechnology and bioengineering.

Increase in ribosomal proteins activity: Translational reprogramming in Vanilla planifolia Jacks., against Fusarium infection

V. Jiménez-Jacinto, L. Vega-Alvarado, Josefat Gregorio-Jorge, 2019, bioRxiv.

Functional categorization of de novo transcriptome assembly of Vanilla planifolia Jacks. potentially points to a translational regulation during early stages of infection by Fusarium oxysporum f. sp. vanillae

V. Jiménez-Jacinto, L. Vega-Alvarado, Josefat Gregorio-Jorge, 2019, BMC Genomics.

Erratum: The BioPAX community standard for pathway data sharing (Nat. Biotechnol. (2010) 28 (935-942)

Gary D. Bader, Frank Schacherer, Edgar Wingender, 2010 .

The BioPAX community standard for pathway data sharing (Nature Biotechnology (2010) 28, (935-942))

Kei-Hoi Cheung, Gary D. Bader, Frank Schacherer, 2012 .

V. Jiménez-Jacinto, L. Vega-Alvarado, Josefat Gregorio-Jorge, 2019, BMC Genomics.

BioPAX – A community standard for pathway data sharing

Gary D Bader, Alexander R. Pico, Joanne S. Luciano, 2010, Nature Biotechnology.

Shining light on the transcriptome: Molecular regulatory networks leading to a fast-growth phenotype by continuous light in an environmentally sensitive teleost (Atherinopsidae).

V. Jiménez-Jacinto, H. Volkoff, C. Martínez-Palacios, 2022, Journal of photochemistry and photobiology. B, Biology.

Argonaute5 and its associated small RNAs modulate the transcriptional response during the rhizobia-Phaseolus vulgaris symbiosis

V. Jiménez-Jacinto, D. Formey, Oswaldo Valdés-López, 2022, Frontiers in Plant Science.

The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons.

Julio Collado-Vides, Verónica Jiménez-Jacinto, Sarath Chandra Janga, 2006, Proceedings of the National Academy of Sciences of the United States of America.

Integrative Differential Expression Analysis for Multiple EXperiments (IDEAMEX): A Web Server Tool for Integrated RNA-Seq Data Analysis

Verónica Jiménez-Jacinto, Alejandro Sanchez-Flores, Leticia Vega-Alvarado, 2019, Front. Genet..

RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12

Julio Collado-Vides, César Bonavides-Martínez, Socorro Gama-Castro, 2004, Nucleic Acids Res..

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

Julio Collado-Vides, César Bonavides-Martínez, Socorro Gama-Castro, 2012, Nucleic Acids Res..

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation

Julio Collado-Vides, César Bonavides-Martínez, Socorro Gama-Castro, 2007, Nucleic Acids Res..

Expanding BioPAX format by integrating Gene Regulation

Julio Collado-Vides, Verónica Jiménez-Jacinto, Irma Martínez-Flores, 2010 .

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

Julio Collado-Vides, César Bonavides-Martínez, Socorro Gama-Castro, 2005, Nucleic Acids Res..

Whole-exome sequencing in maya indigenous families: variant in PPP1R3A is associated with type 2 diabetes

F. Tekola-Ayele, V. Jiménez-Jacinto, M. G. Ortiz-López, 2018, Molecular Genetics and Genomics.

Global transcriptional start site mapping in Geobacter sulfurreducens during growth with two different electron acceptors.

V. Jiménez-Jacinto, L. Vega-Alvarado, Maricela Olvera, 2016, FEMS microbiology letters.

Proteomic analysis revealed proteins induced upon Azotobacter vinelandii encystment.

V. Jiménez-Jacinto, C. Núñez, D. Segura, 2018, Journal of proteomics.

Transcriptome analysis of the spider Phonotimpus pennimani reveals novel toxin transcripts

V. Jiménez-Jacinto, L. Vega-Alvarado, E. Diego-García, 2023, The journal of venomous animals and toxins including tropical diseases.

Differential transcriptome regulation by 3,5-T2 and 3′,3,5-T3 in brain and liver uncovers novel roles for thyroid hormones in tilapia

V. Jiménez-Jacinto, L. Sachs, N. Buisine, 2017, Scientific Reports.

Comparative and functional genomics of the protozoan parasite Babesia divergens highlighting the invasion and egress processes

V. Jiménez-Jacinto, L. Vega-Alvarado, R. Grande, 2019, PLoS neglected tropical diseases.

Assembly and Analysis of Haemonchus contortus Transcriptome as a Tool for the Knowledge of Ivermectin Resistance Mechanisms

V. Jiménez-Jacinto, R. Alonso-Morales, A. Olmedo-Juárez, 2023, Pathogens.

Erratum: The BioPAX community standard for pathway data sharing (Nat. Biotechnol. (2010) 28 (935-942)

Kei-Hoi Cheung, Frank Schacherer, Edgar Wingender, 2010 .