S. Daugherty

发表

Complete genome sequence of the Q-fever pathogen Coxiella burnetii

C. Fraser, H. Tettelin, K. Nelson, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis

O. White, R. Clayton, J. Gill, 2002, Nature Biotechnology.

The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses.

C. Fraser, J. Weidman, J. Moult, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Genomic Epidemiology of the Haitian Cholera Outbreak: a Single Introduction Followed by Rapid, Extensive, and Continued Spread Characterized the Onset of the Epidemic

Jonathan Crabtree, Geeta Shakya, Talima Pearson, 2014, mBio.

The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts

Ian T. Paulsen, Jonathan A. Eisen, Steven L. Salzberg, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Phylogenomics of the Reproductive Parasite Wolbachia pipientis wMel: A Streamlined Genome Overrun by Mobile Genetic Elements

Ling V. Sun, J. Weidman, T. Utterback, 2004, PLoS biology.

Secrets of Soil Survival Revealed by the Genome Sequence of Arthrobacter aurescens TC1

D. Radune, K. Nelson, E. Mongodin, 2006, PLoS genetics.

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome".

Jaideep P. Sundaram, Christopher R. Hauser, Samuel V. Angiuoli, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.

O. White, M. Pop, J. Peterson, 2002, Environmental microbiology.

The IGS Standard Operating Procedure for Automated Prokaryotic Annotation

Samuel V. Angiuoli, O. White, Anup Mahurkar, 2011, Standards in genomic sciences.

Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant Staphylococcus aureus Strain and a Biofilm-Producing Methicillin-Resistant Staphylococcus epidermidis Strain

Samuel V. Angiuoli, Katherine H. Kang, C. Fraser, 2005, Journal of bacteriology.

The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria

S. Salzberg, O. White, D. Radune, 2003, Nature.

Genome Sequences of the Zoonotic Pathogens Chlamydia psittaci 6BC and Cal10

G. Myers, T. Read, S. Daugherty, 2011, Journal of bacteriology.

Metabolic Complementarity and Genomics of the Dual Bacterial Symbiosis of Sharpshooters

Phat L Tran, Dongying Wu, Jonathan A Eisen, 2006, PLoS biology.

The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000

Jia Liu, Alan Collmer, C Robin Buell, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils

Bernard Henrissat, Thomas S. Brettin, Daniel H. Haft, 2009, Applied and Environmental Microbiology.

The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv . tomato DC 3000

Ian T. Paulsen, C. Robin Buell, Alan Collmer, 2003 .

Transcriptional Attenuation Controls Macrolide Inducible Efflux and Resistance in Streptococcus pneumoniae and in Other Gram-Positive Bacteria Containing mef/mel(msr(D)) Elements

C. Fraser, H. Tettelin, S. Daugherty, 2015, PloS one.

Non-classical receptive field mediates switch in a sensory neuron ’ s frequency tuning

S. Salzberg, O. White, D. Radune, 2022 .

Comparative Genomic Evidence for a Close Relationship between the Dimorphic Prosthecate Bacteria Hyphomonas neptunium and Caulobacter crescentus

D. Radune, J. Mrázek, M. Laub, 2006, Journal of bacteriology.

Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes.

G. Weinstock, E. Sodergren, J. Malek, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Whole Genome Sequencing to Investigate the Emergence of Clonal Complex 23 Neisseria meningitidis Serogroup Y Disease in the United States

David R. Riley, Jane W. Marsh, H. Tettelin, 2012, PloS one.

The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough

Rekha Seshadri, Kevin Tran, Gerrit Voordouw, 2004, Nature Biotechnology.

Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys

T. Creasy, L. Pick, S. Daugherty, 2014, BMC Genomics.

Tissue specific diversification, virulence and immune response to Mycobacterium bovis BCG in a patient with an IFN-γ R1 deficiency

H. Tettelin, S. Shallom, S. Holland, 2020, Virulence.

Novel PHEX gene locus‐specific database: Comprehensive characterization of vast number of variants associated with X‐linked hypophosphatemia (XLH)

S. Daugherty, R. Truty, M. Econs, 2021, Human mutation.

Transcriptional Variation of Diverse Enteropathogenic Escherichia coli Isolates under Virulence-Inducing Conditions

D. Rasko, S. Daugherty, A. Shetty, 2017, mSystems.

Complete Genome Sequence of Streptococcus agalactiae CNCTC 10/84, a Hypervirulent Sequence Type 26 Strain

H. Tettelin, A. Narechania, S. Daugherty, 2014, Genome Announcements.

Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment

Ian T. Paulsen, Jonathan A. Eisen, Alison Buchan, 2004, Nature.

Genome Sequences of the Biotechnologically Important Bacillus megaterium Strains QM B1551 and DSM319

Dieter Jahn, Mitrick A. Johns, Jacques Ravel, 2011, Journal of bacteriology.

Whole-Genome Sequences of Bacillus subtilis and Close Relatives

Jacques Ravel, Mark Eppinger, David A. Rasko, 2012, Journal of bacteriology.

Evolution of Catabolic Pathways: Genomic Insights into Microbial s-Triazine Metabolism

K. Nelson, E. Mongodin, S. Daugherty, 2006, Journal of bacteriology.

Genomic Insights into the Emerging Human Pathogen Mycobacterium massiliense

David R. Riley, C. Fraser, H. Tettelin, 2012, Journal of bacteriology.

Whole-Genome Draft Sequences of 26 Enterohemorrhagic Escherichia coli O157:H7 Strains

C. Fraser, T. Cebula, J. Ravel, 2013, Genome Announcements.

Structural flexibility in the Burkholderia mallei genome.

O. White, D. Radune, C. Fraser, 2004, Proceedings of the National Academy of Sciences of the United States of America.

IL-17 Receptor Signaling in Oral Epithelial Cells Is Critical for Protection against Oropharyngeal Candidiasis.

S. Daugherty, S. Sinha, S. Gaffen, 2016, Cell host & microbe.

Major Structural Differences and Novel Potential Virulence Mechanisms from the Genomes of Multiple Campylobacter Species

David A Rasko, Jacques Ravel, Michael C Schatz, 2005, PLoS biology.

Comparative Genomics of Emerging Human Ehrlichiosis Agents

Jonathan Crabtree, Jaideep P. Sundaram, Rekha Seshadri, 2006, PLoS genetics.

Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5

Rekha Seshadri, Jacques Ravel, Qinghu Ren, 2005, Nature Biotechnology.

Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes

Katherine H. Kang, A. Phillippy, C. Fraser, 2005, Science.

Complete Genome Sequence of the Oral Pathogenic Bacterium Porphyromonas gingivalis Strain W83

Ian T. Paulsen, Jonathan A. Eisen, Daniel H. Haft, 2003, Journal of bacteriology.

Transposition Pathovars in Genes Involved in Virulence 1448 A Reveals Divergence among pv . phaseolicola Pseudomonas syringae Whole-Genome Sequence Analysis of

O. White, T. Creasy, C. Fraser, 2005 .

Complete Genome Sequence of the N2-Fixing Broad Host Range Endophyte Klebsiella pneumoniae 342 and Virulence Predictions Verified in Mice

J. Badger, D. Fouts, R. Deboy, 2008, PLoS genetics.

An integrated genomic and transcriptomic survey of mucormycosis-causing fungi

C. Fraser, D. Rasko, J. Crabtree, 2016, Nature Communications.

Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens.

S. J. Billington, D. Radune, D. Haft, 2006, Genome research.

Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae

Ian T. Paulsen, Jonathan A. Eisen, Scott Peterson, 2002, Proceedings of the National Academy of Sciences of the United States of America.

RNAseq Analysis of the Drosophila Response to the Entomopathogenic Nematode Steinernema

S. Daugherty, A. Shetty, I. Eleftherianos, 2017, G3: Genes, Genomes, Genetics.

Analysis of complete genome sequence and major surface antigens of Neorickettsia helminthoeca, causative agent of salmon poisoning disease

C. Fraser, S. Daugherty, Naomi A. Sengamalay, 2017, Microbial biotechnology.

The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea.

W. Doolittle, J. Weidman, K. Nelson, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Signature of adaptive evolution in olfactory receptor genes in Cory’s Shearwater supports molecular basis for smell in procellariiform seabirds

James B. Munro, Joana C. Silva, S. Daugherty, 2020, Scientific Reports.

Genome sequences of 65 Helicobacter pylori strains isolated from asymptomatic individuals and patients with gastric cancer, peptic ulcer disease, or gastritis.

C. Fraser, W. F. Fricke, S. Daugherty, 2013, Pathogens and disease.

Non-classical receptive field mediates switch in a sensory neuron ’ s frequency tuning

S. Salzberg, O. White, D. Radune, 2022 .

Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis

T. D. Read, B. Dougherty, D. Radune, 2003, Science.

Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombination

Julie C Dunning Hotopp, David R. Riley, Rino Rappuoli, 2011, Proceedings of the National Academy of Sciences.

Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogenoformans Z-2901

Luke E. Ulrich, A. Scott Durkin, Qinghu Ren, 2005, PLoS genetics.

Comparative genomics and transcriptomics of Escherichia coli isolates carrying virulence factors of both enteropathogenic and enterotoxigenic E. coli

D. Rasko, S. Daugherty, A. Shetty, 2017, Scientific Reports.

Comparative Analysis of Genome of Ehrlichia sp. HF, a Model Bacterium to Study Fatal Human Ehrlichiosis

C. Fraser, S. Daugherty, Naomi A. Sengamalay, 2021, BMC genomics.

Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species.

David A Rasko, Jacques Ravel, Samuel V. Angiuoli, 2004, Nucleic acids research.

The genome sequence of four isolates from the family Lichtheimiaceae.

S. Daugherty, Joshua Orvis, M. Chibucos, 2015, Pathogens and disease.

Draft Genome Sequence of Mortierella alpina Isolate CDC-B6842

C. Fraser, S. Daugherty, Joshua Orvis, 2014, Genome Announcements.

Gene Transfer and Genome Plasticity in Thermotoga maritima, a Model Hyperthermophilic Species

Robert Huber, Karen E. Nelson, Emmanuel F. Mongodin, 2005, Journal of bacteriology.

Strain W 83 gingivalis Porphyromonas Pathogenic Bacterium Complete Genome Sequence of the Oral

R. Fleischmann, C. Fraser, H. Tettelin, 2003 .

Genome of Geobacter sulfurreducens: Metal Reduction in Subsurface Environments

J A Eisen, O. White, C. Fraser, 2003, Science.

The Streptococcus agalactiae Stringent Response Enhances Virulence and Persistence in Human Blood

H. Tettelin, S. Daugherty, Thomas A. Hooven, 2017, Infection and Immunity.

Genomic Differences between Fibrobacter succinogenes S85 and Fibrobacter intestinalis DR7, Identified by Suppression Subtractive Hybridization

K. Nelson, W. Nelson, S. Daugherty, 2007, Applied and Environmental Microbiology.

Novel Molecular Features of the Fibrolytic Intestinal Bacterium Fibrobacter intestinalis Not Shared with Fibrobacter succinogenes as Determined by Suppressive Subtractive Hybridization

K. Nelson, W. Nelson, S. Daugherty, 2005, Journal of bacteriology.

An Enterotoxin-Bearing Pathogenicity Island in Staphylococcus epidermidis

Song Liu, S. Daugherty, S. Gill, 2011, Journal of bacteriology.

Erratum: Life in hot carbon monoxide: The complete genome sequence of Carboxydothermus hydrogenoformans Z-2901 (PLoS Genetics 1, 5 DOI: 10.1371/journal.pgen.0010065)

Frank T. Robb, Jonathan A. Eisen, Igor B. Zhulin, 2006 .

Genome Sequence of the Obligate Intracellular Animal Pathogen Chlamydia pecorum E58

G. Myers, T. Read, S. Daugherty, 2011, Journal of bacteriology.

RNA-Seq analysis of isolate- and growth phase-specific differences in the global transcriptomes of enteropathogenic Escherichia coli prototype isolates

D. Rasko, S. Daugherty, A. Shetty, 2015, Front. Microbiol..

Effect of a small molecule Lipid II binder on bacterial cell wall stress

S. Daugherty, A. Shetty, E. D. de Leeuw, 2017, Infection and Drug Resistance.

Differences in Genotype and Virulence among Four Multidrug-Resistant Streptococcus pneumoniae Isolates Belonging to the PMEN1 Clone

H. Tettelin, A. Tomasz, S. Daugherty, 2011, PloS one.

Streptococcus pneumoniae in the heart subvert the host response through biofilm-mediated resident macrophage killing

H. Tettelin, S. Daugherty, A. Shetty, 2017, PLoS pathogens.

2 ) Development of a Molecular System for Efficient Production and Maturation of Fe-only Hydrogenases Investigators

M. Beanan, S. Daugherty, L. Brinkac, 2006 .

Draft Genome Sequence of the Methicillin-Resistant Staphylococcus aureus Isolate MRSA-M2

D. Rasko, S. Daugherty, Janette M. Harro, 2013, Genome Announcements.

Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens

Radhakrishnan Mahadevan, Olivia Bui, Derek R Lovley, 2009, BMC Genomics.

Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment

R. Haselkorn, J. Badger, I. Paulsen, 2006, Proceedings of the National Academy of Sciences.

Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys

T. Creasy, L. Pick, S. Daugherty, 2014, BMC Genomics.

C. Fraser, H. Tettelin, S. Shallom, 2014, Emerging infectious diseases.

The FibRumBa Database: A Resource for Biologists with Interests in Gastrointestinal Microbial Ecology, Plant Biomass Degradation, and Anaerobic Microbiology

K. Nelson, T. Davidsen, W. Nelson, 2010, Microbial Ecology.

Correction: Comparative Genomics of Emerging Human Ehrlichiosis Agents

Jaideep P. Sundaram, Samuel V. Angiuoli, O. White, 2006, PLoS Genetics.

Neuraminidase A-Exposed Galactose Promotes Streptococcus pneumoniae Biofilm Formation during Colonization

H. Tettelin, S. Daugherty, L. Tallon, 2016, Infection and Immunity.

Draft Genome Sequences of the Diarrheagenic Escherichia coli Collection

D. Rasko, T. Whittam, S. Daugherty, 2012, Journal of bacteriology.

Efficient Enrichment of Bacterial mRNA from Host-Bacteria Total RNA Samples

C. Fraser, S. Daugherty, L. Tallon, 2016, Scientific Reports.

Use of Comparative Genomics To Characterize the Diversity of Acinetobacter baumannii Surveillance Isolates in a Health Care Institution

Anthony D. Harris, Lalena Wallace, David A. Rasko, 2016, Antimicrobial Agents and Chemotherapy.

Genome Sequence of Escherichia coli O157:H7 Strain 2886-75, Associated with the First Reported Case of Human Infection in the United States

C. Fraser, T. Cebula, J. Ravel, 2014, Genome Announcements.

Erratum: Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440 (Environmental Microbiology 4:12 (799-808))

O. White, M. Pop, J. Peterson, 2003 .

Genome Sequence of the Human Abscess Isolate Streptococcus intermedius BA1

R. DeSalle, J. Ravel, A. Narechania, 2013, Genome Announcements.