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Jaideep P. Sundaram, Christopher R. Hauser, Samuel V. Angiuoli, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Genome Sequence of Babesia bovis and Comparative Analysis of Apicomplexan Hemoprotozoa

Shelby L. Bidwell, B. Haas, O. White, 2007, PLoS pathogens.

Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.

O. White, M. Pop, J. Peterson, 2002, Environmental microbiology.

Genome Stability of Lyme Disease Spirochetes: Comparative Genomics of Borrelia burgdorferi Plasmids

D. Radune, C. Fraser, J. Weidman, 2012, PloS one.

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

William H. Majoros, M. J. García, B. Haas, 2005, Nature.

Optimized multiplex PCR: efficiently closing a whole-genome shotgun sequencing project.

S. Salzberg, D. Radune, S. Kasif, 1999, Genomics.

Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant Staphylococcus aureus Strain and a Biofilm-Producing Methicillin-Resistant Staphylococcus epidermidis Strain

Samuel V. Angiuoli, Katherine H. Kang, C. Fraser, 2005, Journal of bacteriology.

The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria

S. Salzberg, O. White, D. Radune, 2003, Nature.

Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39.

S. Salzberg, O. White, J. Peterson, 2000, Nucleic acids research.

Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae.

S. Salzberg, O. White, J. Peterson, 2003, Nucleic acids research.

Metabolic Complementarity and Genomics of the Dual Bacterial Symbiosis of Sharpshooters

Phat L Tran, Dongying Wu, Jonathan A Eisen, 2006, PLoS biology.

The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000

Jia Liu, Alan Collmer, C Robin Buell, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils

Bernard Henrissat, Thomas S. Brettin, Daniel H. Haft, 2009, Applied and Environmental Microbiology.

The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv . tomato DC 3000

Ian T. Paulsen, C. Robin Buell, Alan Collmer, 2003 .

Correction for Goldberg et al., A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes

Aaron L. Halpern, Granger G. Sutton, Kelvin Li, 2006, Proceedings of the National Academy of Sciences.

Consortium, G.P A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073

Ken Chen, Joshua M. Korn, Afidalina Tumian, 2010 .

Adaptations to Submarine Hydrothermal Environments Exemplified by the Genome of Nautilia profundicola

J. Eisen, Dongying Wu, H. Khouri, 2009, PLoS genetics.

Non-classical receptive field mediates switch in a sensory neuron ’ s frequency tuning

S. Salzberg, O. White, D. Radune, 2022 .

Comparative Genomic Evidence for a Close Relationship between the Dimorphic Prosthecate Bacteria Hyphomonas neptunium and Caulobacter crescentus

D. Radune, J. Mrázek, M. Laub, 2006, Journal of bacteriology.

The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough

Rekha Seshadri, Kevin Tran, Gerrit Voordouw, 2004, Nature Biotechnology.

Draft Genome Sequence of the Pyridinediol-Fermenting Bacterium Synergistes jonesii 78-1

F. Robb, J. Badger, J. Eisen, 2014, Genome Announcements.

Complete genome sequence of Caulobacter crescentus

Ian T. Paulsen, William C. Nierman, J. Craig Venter, 2001, Proceedings of the National Academy of Sciences of the United States of America.

Role of the Dihydrofolate Reductase DfrA (Rv2763c) in Trimethoprim- Sulfamethoxazole (Co-Trimoxazole) Resistance in Mycobacterium tuberculosis

S. Salzberg, O. White, A. Delcher, 2010 .

Corrigendum: Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

William H. Majoros, M. J. García, B. Haas, 2006, Nature.

Insights into Plant Cell Wall Degradation from the Genome Sequence of the Soil Bacterium Cellvibrio japonicus

K. Nelson, E. Mongodin, B. Henrissat, 2008, Journal of bacteriology.

Structural flexibility in the Burkholderia mallei genome.

O. White, D. Radune, C. Fraser, 2004, Proceedings of the National Academy of Sciences of the United States of America.

RF 9 , a potent and selective neuropeptide FF receptor antagonist , prevents opioid-induced tolerance associated with hyperalgesia

Justin, A. Halpern, G. Sutton, 2006 .

Genomic Insights into Methanotrophy: The Complete Genome Sequence of Methylococcus capsulatus (Bath)

Katherine H. Kang, S. Salzberg, C. Fraser, 2004, PLoS biology.

Comparative Genomics of Emerging Human Ehrlichiosis Agents

Jonathan Crabtree, Jaideep P. Sundaram, Rekha Seshadri, 2006, PLoS genetics.

Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5

Rekha Seshadri, Jacques Ravel, Qinghu Ren, 2005, Nature Biotechnology.

Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes

Katherine H. Kang, A. Phillippy, C. Fraser, 2005, Science.

Transposition Pathovars in Genes Involved in Virulence 1448 A Reveals Divergence among pv . phaseolicola Pseudomonas syringae Whole-Genome Sequence Analysis of

O. White, T. Creasy, C. Fraser, 2005 .

Complete Genome Sequence of the N2-Fixing Broad Host Range Endophyte Klebsiella pneumoniae 342 and Virulence Predictions Verified in Mice

J. Badger, D. Fouts, R. Deboy, 2008, PLoS genetics.

Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens.

S. J. Billington, D. Radune, D. Haft, 2006, Genome research.

Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae

Ian T. Paulsen, Jonathan A. Eisen, Scott Peterson, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Hervé Tettelin pneumoniae Streptococcus Complete Genome Sequence of a Virulent Isolate of

Samuel V. Angiuoli, S. Salzberg, O. White, 2013 .

The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium

Ingeborg Holt, Fan Yang, Jonathan A Eisen, 2002, Proceedings of the National Academy of Sciences of the United States of America.

The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea.

W. Doolittle, J. Weidman, K. Nelson, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Laboratory Strains Clinical and Mycobacterium tuberculosis Whole-Genome Comparison of

S. Salzberg, R. Fleischmann, O. White, 2002 .

Non-classical receptive field mediates switch in a sensory neuron ’ s frequency tuning

S. Salzberg, O. White, D. Radune, 2022 .

Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis

T. D. Read, B. Dougherty, D. Radune, 2003, Science.

Application of PCR for detection and identification of mycoplasma contamination in virus stocks

H. Khouri, D. Jacobs, Charles Buck, 1995, In Vitro Cellular & Developmental Biology - Animal.

Genome Degradation in Brucella ovis Corresponds with Narrowing of Its Host Range and Tissue Tropism

Jeffrey R. Robinson, Karl A. Hassan, I. Paulsen, 2009, PloS one.

Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species.

David A Rasko, Jacques Ravel, Samuel V. Angiuoli, 2004, Nucleic acids research.

Genome of Geobacter sulfurreducens: Metal Reduction in Subsurface Environments

J A Eisen, O. White, C. Fraser, 2003, Science.

Castor Bean Organelle Genome Sequencing and Worldwide Genetic Diversity Analysis

J. Foster, J. Ravel, M. J. Rosovitz, 2011, PloS one.

Genome Sequence of a Sulfate-Reducing Thermophilic Bacterium, Thermodesulfobacterium commune DSM 2178T (Phylum Thermodesulfobacteria)

F. Robb, J. Badger, J. Eisen, 2015, Genome Announcements.

Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment

R. Haselkorn, J. Badger, I. Paulsen, 2006, Proceedings of the National Academy of Sciences.

Correction: Comparative Genomics of Emerging Human Ehrlichiosis Agents

Jaideep P. Sundaram, Samuel V. Angiuoli, O. White, 2006, PLoS Genetics.

Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus

Torsten Seemann, Ben Adler, Qinghu Ren, 2007, Nature Biotechnology.

Erratum: Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440 (Environmental Microbiology 4:12 (799-808))

O. White, M. Pop, J. Peterson, 2003 .

Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis

B. Dougherty, D. Radune, L. Umayam, 2003, Science.

Complete genome sequence of Neisseria meningitidis serogroup B strain MC58.

S. Salzberg, R. Fleischmann, O. White, 2000, Science.

Genome Sequence of the Sulfate-Reducing Thermophilic Bacterium Thermodesulfovibrio yellowstonii Strain DSM 11347T (Phylum Nitrospirae)

F. Robb, J. Badger, J. Eisen, 2015, Genome Announcements.