Yuki Kato

发表

RNA Structure Prediction Including Pseudoknots Based on Stochastic Multiple Context-Free Grammar

T. Kasami, Yuki Kato, H. Seki, 2006 .

Alignment-free comparative genomic screen for structured RNAs using coarse-grained secondary structure dot plots

J. Gorodkin, Yuki Kato, J. Havgaard, 2017, BMC Genomics.

Negative-type extreme ultraviolet Resist Materials based on Water-Wheel-like Cyclic Oligomer (Noria)

Yuki Kato, T. Nishikubo, H. Seki, 2010 .

RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming

Tatsuya Akutsu, Kiyoshi Asai, Michiaki Hamada, 2010, Bioinform..

IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming

Tatsuya Akutsu, Kiyoshi Asai, Michiaki Hamada, 2011, Bioinform..

Rtips: fast and accurate tools for RNA 2D structure prediction using integer programming

Tatsuya Akutsu, Kiyoshi Asai, Kengo Sato, 2012, Nucleic Acids Res..

Using hidden Markov models to investigate G-quadruplex motifs in genomic sequences

Yuki Kato, Yuki Kato, Masato Yano, 2014, BMC Genomics.

Rtools: a web server for various secondary structural analyses on single RNA sequences

Kiyoshi Asai, Tsukasa Fukunaga, Michiaki Hamada, 2016, Nucleic Acids Res..

A grammar-based approach to RNA pseudoknotted structure prediction for aligned sequences

Hiroyuki Seki, Yuki Kato, Nobuyoshi Mizoguchi, 2011, 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming

Tatsuya Akutsu, Kiyoshi Asai, Michiaki Hamada, 2010, Bioinform..

Formal grammars for describing RNA pseudoknotted structure and their application to structure analysis

Yuki Kato, Yuki Kato, 2007 .

On the Generative Power of Grammars for RNA Secondary Structure

Tadao Kasami, Hiroyuki Seki, Yuki Kato, 2005, IEICE Trans. Inf. Syst..

Prediction of RNA secondary structure including pseudoknots for long sequences

Kengo Sato, Yuki Kato, 2021, Briefings Bioinform..

A grammatical approach to RNA-RNA interaction prediction

Tatsuya Akutsu, Hiroyuki Seki, Yuki Kato, 2009, Pattern Recognit..

Dynamic Programming Algorithms for RNA Structure Prediction with Binding Sites

Tatsuya Akutsu, Yuki Kato, Unyanee Poolsap, 2010, Pacific Symposium on Biocomputing.

DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition

Tatsuya Akutsu, Kiyoshi Asai, Yasubumi Sakakibara, 2012, Bioinform..

Prediction of RNA secondary structure with pseudoknots using integer programming

Tatsuya Akutsu, Yuki Kato, Unyanee Poolsap, 2009, BMC Bioinformatics.

Branch-and-Bound Algorithms for Enumerating Treelike Chemical Graphs with Given Path Frequency Using Detachment-Cut

Hiroshi Nagamochi, Tatsuya Akutsu, Liang Zhao, 2010, J. Chem. Inf. Model..