P. Engström

发表

Systematic evaluation of spliced alignment programs for RNA-seq data

J. Harrow, R. Guigó, T. Hubbard, 2013, Nature Methods.

Genome-wide analysis of mammalian promoter architecture and evolution

Martin S. Taylor, Sin Lam Tan, V. Bajic, 2006, Nature Genetics.

RNAi Screen Indicates Widespread Biological Function for Human Natural Antisense Transcripts

A. Chalk, C. Wahlestedt, P. Engström, 2010, PloS one.

Digital transcriptome profiling of normal and glioblastoma-derived neural stem cells identifies genes associated with patient survival

Paul Bertone, Stefan H Stricker, Steven M Pollard, 2012, Genome Medicine.

Antisense Transcription in the Mammalian Transcriptome

S. Batalov, A. Sandelin, J. Kawai, 2005, Science.

Complex Loci in Human and Mouse Genomes

Sin Lam Tan, S. Batalov, V. Bajic, 2006, PLoS genetics.

Assessment of transcript reconstruction methods for RNA-seq

J. Harrow, F. Kokocinski, R. Guigó, 2013, Nature Methods.

Genomic regulatory blocks underlie extensive microsynteny conservation in insects.

Boris Lenhard, B. Lenhard, Shannan J. Ho Sui, 2007, Genome research.

Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates.

K. Howe, M. Cáccamo, I. Sealy, 2007, Genome research.

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

Martin S. Taylor, Denis C. Bauer, Andrew M. Waterhouse, 2009, Nature Genetics.

Widespread resetting of DNA methylation in glioblastoma-initiating cells suppresses malignant cellular behavior in a lineage-dependent manner.

Paul Bertone, S. Beck, S. Stricker, 2013, Genes & development.

Identification of conserved regulatory elements by comparative genome analysis

A. Sandelin, W. Wasserman, B. Lenhard, 2003, Journal of biology.

Transcript Annotation in FANTOM3: Mouse Gene Catalog Based on Physical cDNAs

C. Bult, S. Batalov, D. Hill, 2006, PLoS genetics.

Mammalian MicroRNA Prediction through a Support Vector Machine Model of Sequence and Structure

B. Lenhard, Y. Sheng, P. Engström, 2007, PloS one.

Gene complexes and regulatory domains in metazoan genomes

P. Engström, 2007 .

A High-Content Small Molecule Screen Identifies Sensitivity of Glioblastoma Stem Cells to Inhibition of Polo-Like Kinase 1

Patrick J. Paddison, Paul Bertone, S. Stricker, 2013, PloS one.

Interaction of Sox2 with RNA binding proteins in mouse embryonic stem cells.

S. Robson, P. Engström, G. Castelo-Branco, 2019, Experimental cell research.

Interaction of Sox2 with RNA binding proteins in mouse embryonic stem cells

Paulo P. Amaral, S. Robson, P. Engström, 2019, bioRxiv.

The non-coding snRNA 7SK controls transcriptional termination, poising, and bidirectionality in embryonic stem cells

Paulo P. Amaral, S. Robson, Paul Bertone, 2013, Genome Biology.

Current chemotherapy protocols for childhood acute lymphoblastic leukemia induce loss of humoral immunity to viral vaccination antigens.

P. Engström, F. Chiodi, O. Björk, 2002, Pediatrics.

Transcript annotation in FANTOM 3

C. Bult, S. Batalov, John Quackenbush, 2006 .

Web-based tools and approaches to study long-range gene regulation in Metazoa.

B. Lenhard, P. Engström, D. Fredman, 2009, Briefings in functional genomics & proteomics.

Identification of functional SNPs in the 5-prime flanking sequences of human genes

W. Wasserman, B. Lenhard, S. Mottagui-Tabar, 2005, BMC Genomics.

Large Scale Functional Analysis of Mammalian Long Noncoding Antisense Transcripts

Piero Carninci, Y. Hayashizaki, B. Lenhard, 2008 .

CORRECTIONS

P. Engström, P. Njølstad, M. Alonso, 1869, The Lancet.

In Silico Detection of Sequence Variations Modifying Transcriptional Regulation

David J. Arenillas, Wyeth W. Wasserman, Boris Lenhard, 2007, PLoS Comput. Biol..

and maintain conserved synteny in vertebrates Genomic regulatory blocks encompass multiple neighboring genes

K. Howe, M. Cáccamo, I. Sealy, 2007 .

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

Wyeth W. Wasserman, Boris Lenhard, Albin Sandelin, 2004, Nucleic Acids Res..

RNAdb—a comprehensive mammalian noncoding RNA database

Boris Lenhard, Yoshihide Hayashizaki, John S. Mattick, 2004, Nucleic Acids Res..

Long-range gene regulation links genomic type 2 diabetes and obesity risk regions to HHEX, SOX4, and IRX3

Boris Lenhard, Thomas S. Becker, Miguel Manzanares, 2009, Proceedings of the National Academy of Sciences.

Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes

Boris Lenhard, Albin Sandelin, Johan Ericson, 2004, BMC Genomics.

RNAdb 2.0—an expanded database of mammalian non-coding RNAs

Boris Lenhard, John S. Mattick, Ken C. Pang, 2006, Nucleic Acids Res..

Correction for “ Long-range gene regulation links genomic type 2 diabetes and obesity risk regions to HHEX , SOX 4 , and IRX

P. Engström, A. Molven, P. Njølstad, 2011 .

Novel loss-of-function variant in DENND5A impedes melanosomal cargo transport and predisposes to familial cutaneous melanoma.

M. Tucker, A. Goldstein, J. Lundeberg, 2021, Genetics in medicine : official journal of the American College of Medical Genetics.

Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes

Boris Lenhard, B. Lenhard, P. Engström, 2008, Genome Biology.

Exploring hepatic hormone actions using a compilation of gene expression profiles

A. Sandelin, B. Lenhard, P. Engström, 2015 .

Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis

Markus S. Schröder, Joakim Lundeberg, Yafeng Zhu, 2017, Nucleic acids research.

The role of germline alterations in the DNA damage response genes BRIP1 and BRCA2 in melanoma susceptibility

S. Kjellqvist, P. Engström, D. Edsgärd, 2016, Genes, chromosomes & cancer.

conservation in insects Genomic regulatory blocks underlie extensive microsynteny data

B. Lenhard, S. Sui, P. Engström, 2007 .

Massive parallel sequencing questions the pathogenic role of missense variants in dilated cardiomyopathy.

M. Bergo, P. Engström, Sara Light, 2017, International journal of cardiology.

Exploring hepatic hormone actions using a compilation of gene expression profiles

A. Sandelin, B. Lenhard, P. Engström, 2005 .

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

Martin S. Taylor, Denis C. Bauer, Ariel S. Schwartz, 2009, Nature Genetics.

Web-based tools and approaches to study long-range gene regulation in Metazoa.

B. Lenhard, P. Engström, David Fredman, 2009, Briefings in functional genomics & proteomics.