Xiufen Zou

发表

A New Evolutionary Algorithm for Solving Many-Objective Optimization Problems

Lishan Kang, Yu Chen, Xiufen Zou, 2008, IEEE Transactions on Systems, Man, and Cybernetics, Part B (Cybernetics).

Deciphering deterioration mechanisms of complex diseases based on the construction of dynamic networks and systems analysis

Xiufen Zou, Zishu Pan, Suoqin Jin, 2015, Scientific Reports.

The linear interplay of intrinsic and extrinsic noises ensures a high accuracy of cell fate selection in budding yeast

Xiufen Zou, Yongkai Li, Ming Yi, 2014, Scientific Reports.

Identification of Intercellular Signaling Changes Across Conditions and Their Influence on Intracellular Signaling Response From Multiple Single-Cell Datasets

Xiufen Zou, Suoqin Jin, Mengqian Hao, 2021, Frontiers in Genetics.

Domain control of nonlinear networked systems and applications to complex disease networks

Fang-Xiang Wu, Xiufen Zou, Suoqin Jin, 2017 .

Characterizing and controlling the inflammatory network during influenza A virus infection

Xiufen Zou, Suoqin Jin, Yuanyuan Li, 2014, Scientific Reports.

Mathematical models of specificity in cell signaling.

Xiufen Zou, Qing Nie, Natalia L Komarova, 2007, Biophysical journal.

A theoretical framework for specificity in cell signaling

Xiufen Zou, Qing Nie, Natalia L Komarova, 2005, Molecular systems biology.

A Fast Dynamical Evolutionary Algorithm for Multi-objective Mechanical Component Design

Lishan Kang, Xiufen Zou, Minzhong Liu, 2004 .

Modeling HIV-1 viral capsid nucleation by dynamical systems.

Xiufen Zou, S. Tavener, Yuewu Liu, 2015, Mathematical biosciences.

Crosstalk between pathways enhances the controllability of signalling networks.

Xiufen Zou, Suoqin Jin, Dingjie Wang, 2016, IET systems biology.

An Efficient Asynchronous Parallel Evolutionary Algorithm Based on Message Passing Model for Solving Complex Nonlinear Constrained Optimization

Xiufen Zou, Haoning Wu, Chunlin Xu, 2009 .

Modeling and Dynamical Analysis of Virus-Triggered Innate Immune Signaling Pathways

Xiufen Zou, Zishu Pan, Jinying Tan, 2012, PloS one.

Understanding inhibition of viral proteins on type I IFN signaling pathways with modeling and optimization.

Xiufen Zou, Z. Pan, Xueshuang Xiang, 2010, Journal of theoretical biology.

Detecting Essential Proteins Based on Network Topology, Gene Expression Data and Gene Ontology Information.

Xiufen Zou, Wei Zhang, Jia Xu, 2016, IEEE/ACM transactions on computational biology and bioinformatics.

Reverse-engineering of gene networks for regulating early blood development from single-cell measurements

Xiaohua Hu, Xiufen Zou, Tianhai Tian, 2017, BMC Medical Genomics.

Application of interpretable machine learning for early prediction of prognosis in acute kidney injury

Xiufen Zou, Chang Hu, Z. Peng, 2022, Computational and structural biotechnology journal.

A general index for linear and nonlinear correlations for high dimensional genomic data

Xiufen Zou, Jing Zhang, Zhihao Yao, 2020, BMC genomics.

A New Model System for Exploring Assembly Mechanisms of the HIV-1 Immature Capsid In Vivo

Xiufen Zou, Yuewu Liu, 2019, Bulletin of mathematical biology.

Synchronization feature of coupled cell-cycle oscillators

Xiufen Zou, Wei Zhang, 2011, 2011 IEEE International Conference on Systems Biology (ISB).

Control Strategies for a Tumor-Immune System with Impulsive Drug Delivery under a Random Environment

Xiufen Zou, Xinyu Song, Mingzhan Huang, 2022, Acta Mathematica Scientia.

Control Strategies for a Tumor-Immune System with Impulsive Drug Delivery under a Random Environment

Xiufen Zou, Xinyu Song, Mingzhan Huang, 2022, Acta Mathematica Scientia.

SCCLRR: A Robust Computational Method for Accurate Clustering Single Cell RNA-Seq Data

Wei Zhang, Yuanyuan Li, Xiufen Zou, 2020, IEEE Journal of Biomedical and Health Informatics.

A new centrality measure of nodes in multilayer networks under the framework of tensor computation

Xiufen Zou, Xiufen Zou, Dingjie Wang, 2018 .

scRCMF: Identification of Cell Subpopulations and Transition States From Single-Cell Transcriptomes

Xiufen Zou, Qing Nie, Suoqin Jin, 2020, IEEE Transactions on Biomedical Engineering.

scPADGRN: A preconditioned ADMM approach for reconstructing dynamic gene regulatory network using single-cell RNA sequencing data

Yuan Huang, Xiao Zheng, Xiufen Zou, 2019, bioRxiv.

Single-cell data-driven mathematical model reveals possible molecular mechanisms of embryonic stem-cell differentiation.

Xiufen Zou, Wei Zhang, Qin Zhang, 2019, Mathematical biosciences and engineering : MBE.

Optimal Control Strategy for Abnormal Innate Immune Response

Xiufen Zou, Jinying Tan, Xiufen Zou, 2015, Comput. Math. Methods Medicine.

Inference of genetic regulatory network for stem cell using single cells expression data

Xiaohua Hu, Xiufen Zou, Tianhai Tian, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Microglia depletion exacerbates demyelination and impairs remyelination in a neurotropic coronavirus infection

Xiufen Zou, S. Perlman, D. Meyerholz, 2020, Proceedings of the National Academy of Sciences.

Identifying key nodes in multilayer networks based on tensor decomposition.

Xiufen Zou, Xiufen Zou, Dingjie Wang, 2017, Chaos.

Data-driven multi-scale mathematical modeling of SARS-CoV-2 infection reveals heterogeneity among COVID-19 patients

Xiufen Zou, J. Lei, Z. Pan, 2021, PLoS Comput. Biol..

Data-Driven Mathematical Modeling and Dynamical Analysis for SARS-CoV-2 Coinfection with Bacteria

Xiufen Zou, Yu Zhou, Mingzhan Huang, 2021, Int. J. Bifurc. Chaos.

Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology Information

Yuanyuan Li, Xiufen Zou, Wei Zhang, 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology Information

Xiufen Zou, Yuanyuan Li, Jia Xu, 2018, TCBB.

A New Method for Identifying Essential Proteins by Measuring Co-Expression and Functional Similarity

Xiufen Zou, Wei Zhang, Jia Xu, 2016, IEEE Transactions on NanoBioscience.

Mathematical Modeling and Dynamical Analysis for Tumor Cells and Tumor Propagating Cells Controlled by G9a Inhibitors

Xiufen Zou, Juan Shen, Xuewen Tan, 2023, Int. J. Bifurc. Chaos.

A New Model System for Exploring Assembly Mechanisms of the HIV-1 Immature Capsid In Vivo

Xiufen Zou, Yuewu Liu, 2019, Bulletin of Mathematical Biology.

Dynamic Host Immune and Transcriptomic Responses to Respiratory Syncytial Virus Infection in a Vaccination-Challenge Mouse Model

Xiufen Zou, Z. Pan, Jie Yang, 2021, Virologica Sinica.

Hepatitis B Virus Core Particles Containing a Conserved Region of the G Protein Combined with Interleukin-35 Protected Mice against Respiratory Syncytial Virus Infection without Vaccine-Enhanced Immunopathology

Xiufen Zou, Z. Pan, Jie Yang, 2020, Journal of Virology.

Negative feedback contributes to the stochastic expression of the interferon-β gene in virus-triggered type I interferon signaling pathways.

Xiufen Zou, Tianhai Tian, Wei Zhang, 2015, Mathematical biosciences.

Modeling specificity in the yeast MAPK signaling networks.

Xiufen Zou, Zishu Pan, Xiufen Zou, 2008, Journal of theoretical biology.

Mathematical modeling and dynamical analysis of anti-tumor drug dose-response.

Xiufen Zou, Juan Shen, Yuyang Xiao, 2022, Mathematical biosciences and engineering : MBE.

A novel computational framework for integrating multidimensional data to enhance accuracy in predicting the prognosis of colorectal cancer

Xiufen Zou, Ruifeng Xu, Qihua Zhang, 2022, MedComm – Future Medicine.

Several Dynamic Models of Large-Scale Insect Cell Infection at Low Multiplicity of Infection

Xiufen Zou, Lei Deng, R. Pan, 2009, 2009 3rd International Conference on Bioinformatics and Biomedical Engineering.

Mathematical Modeling and Nonlinear Dynamical Analysis of Cell Growth in Response to Antibiotics

Xiufen Zou, Lili Niu, Gang Wang, 2015, Int. J. Bifurc. Chaos.

Robustness Analysis of EGFR Signaling Network Based on Evolutionary Algorithm

Xiufen Zou, Ting Wang, Xiufen Zou, 2008, 2008 2nd International Conference on Bioinformatics and Biomedical Engineering.

Robustness analysis of EGFR signaling network with a multi-objective evolutionary algorithm

Xiufen Zou, Minzhong Liu, Zishu Pan, 2008, Biosyst..

Mathematical modeling reveals the mechanisms of feedforward regulation in cell fate decisions in budding yeast

Xiufen Zou, Wenlong Li, Ming Yi, 2015, Quantitative Biology.

Identification of the molecular mechanisms for cell-fate selection in budding yeast through mathematical modeling.

Xiufen Zou, Yongkai Li, Ming Yi, 2013, Biophysical journal.

Control of multilayer biological networks and applied to target identification of complex diseases

Xiufen Zou, Wei Zheng, Dingjie Wang, 2019, BMC Bioinformatics.

DNA Methylation Basis in the Effect of White Matter Integrity Deficits on Cognitive Impairments and Psychopathological Symptoms in Drug-Naive First-Episode Schizophrenia

Huafu Chen, Xiufen Zou, L. Lv, 2021, Frontiers in Psychiatry.

scASK: A novel ensemble framework for classifying cell types based on single-cell RNA-seq data

Bo Liu, Fang-Xiang Wu, Xiufen Zou, 2020, bioRxiv.

Inferring Large-Scale Gene Regulatory Networks Using a Randomized Algorithm Based on Singular Value Decomposition

Hua Xiang, Xiufen Zou, Haitao Wang, 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

A New Asynchronous Parallel Algorithm for Inferring Large-Scale Gene Regulatory Networks

Xiufen Zou, Wei Zhang, Xiangyun Xiao, 2015, PloS one.

Construction of the influenza A virus infection-induced cell-specific inflammatory regulatory network based on mutual information and optimization

Xiufen Zou, Suoqin Jin, Xiufen Zou, 2013, BMC Systems Biology.

Identifying disease modules and components of viral infections based on multi-layer networks

Xiufen Zou, Yuanyuan Li, 2016, Science China Information Sciences.

Oligodendrocytes that survive acute coronavirus infection induce prolonged inflammatory responses in the CNS

Xiufen Zou, S. Perlman, M. Cassell, 2020, Proceedings of the National Academy of Sciences.

Fast annealing genetic algorithm for multi-objective optimization problems

Lishan Kang, Xiufen Zou, Lishan Kang, 2005, Int. J. Comput. Math..

A High Performance Multi-objective Evolutionary Algorithm Based on the Principles of Thermodynamics

Lishan Kang, Xiufen Zou, Jun He, 2004, PPSN.

Performance assessment of DMOEA-DD with CEC 2009 MOEA competition test instances

Zhijian Wu, Yu Chen, Xiufen Zou, 2009, 2009 IEEE Congress on Evolutionary Computation.

Qualitative Analysis of Critical Transitions in Complex Disease Propagation from a Dynamical Systems Perspective

Xiufen Zou, Gang Wang, Xiufen Zou, 2016, Int. J. Bifurc. Chaos.

A New Evolutionary Decision Theory for Many-Objective Optimization Problems

Ming Yang, Changhe Li, Yan Li, 2007, ISICA.

Tensor-based mathematical framework and new centralities for temporal multilayer networks

Xiufen Zou, Dingjie Wang, Wei Yu, 2020, Inf. Sci..

Accurate prediction of glioma grades from radiomics using a multi-filter and multi-objective-based method

Xiufen Zou, Suoqin Jin, Qing Tan, 2022, Mathematical Biosciences and Engineering.

Influence of Binomial Crossover on Approximation Error of Evolutionary Algorithms

Jun He, Xiufen Zou, Yu Chen, 2021, Mathematics.

Inﬂuence of the Binomial Crossover on Performance of Evolutionary Algorithms

Jun He, Cong Wang, Yu Chen, 2021 .

Influence of the Binomial Crossover on Performance of Randomized Search Heuristics pdf

Jun He, Cong Wang, Yu Chen, 2021, ArXiv.

Diversity-maintained differential evolution embedded with gradient-based local search

Wei Yu, Weicheng Xie, Xiufen Zou, 2013, Soft Comput..

Evolutionary optimization based on chaotic sequence in dynamic environments

Xiufen Zou, M. Wang, Anmin Zhou, 2004, IEEE International Conference on Networking, Sensing and Control, 2004.

An Effective Dynamical Multi-objective Evolutionary Algorithm for Solving Optimization Problems with High Dimensional Objective Space

Lishan Kang, Xiufen Zou, Minzhong Liu, 2007, ISICA.

A binary differential evolution algorithm learning from explored solutions

Weicheng Xie, Yu Chen, Xiufen Zou, 2014, Neurocomputing.

Control Energy and controllability of multilayer Networks

Xiufen Zou, Dingjie Wang, Xiufen Zou, 2017, Adv. Complex Syst..

Estimation of control Energy and control Strategies for Complex Networks

Fang-Xiang Wu, Xiufen Zou, Dingjie Wang, 2015, Adv. Complex Syst..

Data-driven mathematical modeling and quantitative analysis of cell dynamics in the tumor microenvironment

Xiufen Zou, Sicheng Li, Shun-guan Wang, 2022, Comput. Math. Appl..

Predicting Essential Proteins by Integrating Network Topology, Subcellular Localization Information, Gene Expression Profile and GO Annotation Data

Xiufen Zou, Jia Xu, Wei Zhang, 2020, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

The Data-Based Mathematical Modeling and Parameter Identification in JAK-STAT Signaling Pathway by Using a Hybrid Evolutionary Algorithm

Xiufen Zou, Wei Zhang, Xiufen Zou, 2010, ISICA.

Identifying Optimal Adaptive Therapeutic Schedules for Prostate Cancer through Combining Mathematical Modeling and Dynamic Optimization

Xiufen Zou, Ruiyang Liu, Xuewen Tan, 2022, Applied Mathematical Modelling.

Integrating network topology, gene expression data and GO annotation information for protein complex prediction

Xiufen Zou, Yuanyuan Li, Jia Xu, 2019, J. Bioinform. Comput. Biol..

A New Method for Detecting Protein Complexes based on the Three Node Cliques

Xiufen Zou, Wei Zhang, Xiufen Zou, 2015, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Control of multilayer biological networks and applied to target identification of complex diseases

Xiufen Zou, Dingjie Wang, Wei Zheng, 2019, BMC Bioinformatics.

Mathematical modeling for intracellular transport and binding of HIV-1 Gag proteins.

Xiufen Zou, Jinying Tan, Farrah Sadre-Marandi, 2015, Mathematical biosciences.

Trajectory Control in Nonlinear Networked Systems and Its Applications to Complex Biological Systems

Xiufen Zou, Dingjie Wang, Suoqin Jin, 2018, SIAM J. Appl. Math..

Mathematical modeling and quantitative analysis of HIV-1 Gag trafficking and polymerization

Xiufen Zou, Yuewu Liu, Xiufen Zou, 2017, PLoS Comput. Biol..

Synchronization ability of coupled cell-cycle oscillators in changing environments

Xiufen Zou, Wei Zhang, Xiufen Zou, 2012, BMC Systems Biology.

Mathematical modeling of HIV-like particle assembly in vitro.

Xiufen Zou, Yuewu Liu, 2017, Mathematical biosciences.

Complex Dynamical Analysis of a Coupled Network from Innate Immune responses

Xiufen Zou, Jinying Tan, Xiufen Zou, 2013, Int. J. Bifurc. Chaos.

Identification of Interaction Clusters Using a Semi-supervised Hierarchical Clustering Method pdf

Yuanyuan Yang, Yu Chen, Yaochu Jin, 2019, ArXiv.

A new dynamical evolutionary algorithm based on statistical mechanics

Zbigniew Michalewicz, Lishan Kang, Yuanxiang Li, 2003, Journal of Computer Science and Technology.

Drift conditions for estimating the first hitting times of evolutionary algorithms

Yu Chen, Xiufen Zou, Jun He, 2011, Int. J. Comput. Math..

Systematic Analysis of the Mechanisms of Virus-Triggered Type I IFN Signaling Pathways through Mathematical Modeling

Xiufen Zou, Wei Zhang, Xiufen Zou, 2013, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Inference of Biochemical S-Systems via Mixed-Variable Multiobjective Evolutionary Optimization

Dong Chen, Yu Chen, Xiufen Zou, 2017, Comput. Math. Methods Medicine.

Inferring Gene Regulatory Network Using An Evolutionary Multi-Objective Method pdf

Yu Chen, Xiufen Zou, Xiufen Zou, 2015, ArXiv.

A Class of Lattice Boltzmann Models with the Energy Equation

Xiufen Zou, Yuanxiang Li, Shengwu Xiong, 2000 .

A general index for linear and nonlinear correlations for high dimensional genomic data

Xiufen Zou, Jing Zhang, Zhihao Yao, 2020, BMC genomics.

Several Indicators of Critical Transitions for Complex Diseases Based on Stochastic Analysis

Yuanyuan Li, Xiufen Zou, Gang Wang, 2017, Comput. Math. Methods Medicine.

The Topological Properties of Virus-Human Protein Interaction Networks

Xiufen Zou, Jinying Tan, 2010 .

A network-based computational framework to predict and differentiate functions for gene isoforms using exon-level expression data.

Dingjie Wang, Xiufen Zou, Kin Fai Au, 2020, Methods.

Network Evolution Model-based prediction of tumor mutation burden from radiomic-clinical features in endometrial cancers

Xiufen Zou, Suoqin Jin, Qing Tan, 2023, BMC Cancer.

Identifying key nodes in multilayer networks based on tensor decomposition.

Xiufen Zou, Dingjie Wang, Haitao Wang, 2017, Chaos.

A New Evolutionary Algorithm for Solving Many-Objective Optimization Problems

Lishan Kang, Xiufen Zou, Yu Chen, 2008, IEEE Transactions on Systems, Man, and Cybernetics, Part B (Cybernetics).

scAB detects multiresolution cell states with clinical significance by integrating single-cell genomics and bulk sequencing data

Xiufen Zou, Suoqin Jin, Qinran Zhang, 2022, Nucleic acids research.