Jiajia Chen

发表

Molecular Signature of Cancer at Gene Level or Pathway Level? Case Studies of Colorectal Cancer and Prostate Cancer Microarray Data

Ying Wang, Daqing Zhang, Jiajia Chen, 2013, Comput. Math. Methods Medicine.

How to Become a Smart Patient in the Era of Precision Medicine?

Bairong Shen, Jiajia Chen, Yalan Chen, 2017, Advances in experimental medicine and biology.

Translational Bioinformatics for Diagnostic and Prognostic Prediction of Prostate Cancer in the Next-Generation Sequencing Era

Bairong Shen, Jiajia Chen, Daqin Zhang, 2013, BioMed research international.

A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies

Bairong Shen, Jiajia Chen, Wenyu Zhang, 2011, PloS one.

The topology and dynamics of protein complexes: insights from intra- molecular network theory.

Bairong Shen, Wenying Yan, Guang Hu, 2013, Current protein & peptide science.

The construction of an amino acid network for understanding protein structure and function

Bairong Shen, Jiajia Chen, Guang Hu, 2014, Amino Acids.

Network Biomarkers for Diagnosis and Prognosis of Human Prostate Cancer

Bairong Shen, Jiajia Chen, 2013 .

Cohort Research in "Omics" and Preventive Medicine.

S. Zhang, Jiajia Chen, Yi Shen, 2017, Advances in experimental medicine and biology.

MicroRNA biomarker identification for pediatric acute myeloid leukemia based on a novel bioinformatics model

Jiajia Chen, Bairong Shen, Zhandong Sun, 2015, Oncotarget.

Amino acid contact energy networks impact protein structure and evolution.

Jiajia Chen, Bairong Shen, Wenying Yan, 2014, Journal of theoretical biology.

Effects of Time Point Measurement on the Reconstruction of Gene Regulatory Networks

Bairong Shen, Yang Yang, Wenying Yan, 2010, Molecules.

Biological Networks for Cancer Candidate Biomarkers Discovery

Jiajia Chen, Guang Hu, Wenying Yan, 2016, Cancer informatics.

Informatics for Nutritional Genetics and Genomics.

Jiajia Chen, Yuan Gao, 2017, Advances in experimental medicine and biology.

Long Non-coding RNAs in Urologic Malignancies: Functional Roles and Clinical Translation

Bairong Shen, Jiajia Chen, Y. Shan, 2016, Journal of Cancer.

Identification of Network Biomarkers for Cancer Diagnosis

Luonan Chen, Bairong Shen, Jiajia Chen, 2013 .

Supplementary Issue: Precision Cancer Medicine through Biomedical Informatics

Jiajia Chen, Guang Hu, Wenying Yan, 2016 .

Traditional Chinese Medicine data mining: Associating clinical cancer case studies with Traditional Chinese Medicine therapies

Bairong Shen, Jiajia Chen, Yang Yang, 2010, 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Biomarker MicroRNAs for Diagnosis, Prognosis and Treatment of Hepatocellular Carcinoma: A Functional Survey and Comparison

Luonan Chen, Bairong Shen, Jiajia Chen, 2016, Scientific Reports.

Prognostic Roles of ceRNA Network-Based Signatures in Gastrointestinal Cancers

B. Niu, Bairong Shen, Jiajia Chen, 2022, Frontiers in Oncology.

Biomarker Discovery for the Carcinogenic Heterogeneity Between Colon and Rectal Cancers Based on lncRNA-Associated ceRNA Network Analysis

Bairong Shen, Jiajia Chen, Yuxin Lin, 2020, Frontiers in Oncology.

Identification of Novel Drugs Targeting Cell Cycle Regulators for the Treatment of High-Grade Serous Ovarian Cancer via Integrated Bioinformatics Analysis

Donghui Yan, Jiajia Chen, Jiacheng Zuo, 2022, Symmetry.

Development of a novel chemokine signaling-based multigene signature to predict prognosis and therapeutic response in colorectal cancer.

Donghui Yan, Jiajia Chen, Jiacheng Zuo, 2021, Journal of Zhejiang University. Science. B.

The preservation of bidirectional promoter architecture in Eukaryotes - Functional or co-regulation constraint?

Bairong Shen, Jiajia Chen, Chao Xu, 2011, 2011 IEEE International Conference on Systems Biology (ISB).

The construction of an amino acid network for understanding protein structure and function

Bairong Shen, Jiajia Chen, Guang Hu, 2014, Amino Acids.

Decoding competing endogenous RNA networks for cancer biomarker discovery

Xin Qi, Jiajia Chen, Bairong Shen, 2020, Briefings Bioinform..

Computer-aided biomarker discovery for precision medicine: data resources, models and applications

Bairong Shen, Li Shen, Yuxin Lin, 2019, Briefings Bioinform..

Translational Biomedical Informatics in the Cloud: Present and Future

Bairong Shen, Wenying Yan, Jiajia Chen, 2013, BioMed research international.

RNA Bioinformatics for Precision Medicine.

Bairong Shen, Jiajia Chen, Bairong Shen, 2016, Advances in experimental medicine and biology.

A systems biology perspective on rational design of peptide vaccine against virus infections.

Jiajia Chen, Bairong Shen, Ying Wang, 2012, Current topics in medicinal chemistry.

Interactions Between Genetics, Lifestyle, and Environmental Factors for Healthcare.

Jiajia Chen, Bairong Shen, Yuxin Lin, 2017, Advances in experimental medicine and biology.

MicroRNA Alterations for Diagnosis, Prognosis, and Treatment of Osteoporosis: A Comprehensive Review and Computational Functional Survey

Bairong Shen, Jiajia Chen, Hai Hu, 2020, Frontiers in Genetics.

Identification of MicroRNAs as Potential Biomarker for Gastric Cancer by System Biological Analysis

Jiajia Chen, Zhandong Sun, Yuxin Lin, 2014, BioMed research international.

Network Biomarkers Constructed from Gene Expression and Protein-Protein Interaction Data for Accurate Prediction of Leukemia

Jiajia Chen, Bairong Shen, Yuxin Lin, 2017, Journal of Cancer.

Deciphering oncogenic drivers: from single genes to integrated pathways

Jiajia Chen, Bairong Shen, Maomin Sun, 2015, Briefings Bioinform..

The preservation of bidirectional promoter architecture in eukaryotes: what is the driving force?

Chao Xu, Jiajia Chen, Bairong Shen, 2012, BMC Systems Biology.

Gene Expression Profile of Colon Cancer Cell Lines Treated with SN38

Bairong Shen, Jiajia Chen, Xiao-Feng Sun, 2010, 2010 4th International Conference on Bioinformatics and Biomedical Engineering.

Newborn Screening in the Era of Precision Medicine.

Bairong Shen, Jiajia Chen, Lan Yang, 2017, Advances in experimental medicine and biology.

Identifying novel prostate cancer associated pathways based on integrative microarray data analysis

Ying Wang, Jiajia Chen, Bairong Shen, 2011, Comput. Biol. Chem..

A Ferroptosis-Related Gene Signature Identified as a Novel Prognostic Biomarker for Colon Cancer

Donghui Yan, Bairong Shen, Jiajia Chen, 2021, Frontiers in Genetics.

Identifying novel glioma associated pathways based on systems biology level meta-analysis

Yin Li, Jiajia Chen, Bairong Shen, 2013, BMC Systems Biology.

Biomarker microRNAs for prostate cancer metastasis: screened with a network vulnerability analysis model

Jiajia Chen, Bairong Shen, Zhandong Sun, 2018, Journal of Translational Medicine.

Discovery and characterization of long intergenic non-coding RNAs (lincRNA) module biomarkers in prostate cancer: an integrative analysis of RNA-Seq data

Zhongming Zhao, Bairong Shen, Jiajia Chen, 2015, BMC Genomics.

Identification of novel microRNA regulatory pathways associated with heterogeneous prostate cancer

Jiajia Chen, Bairong Shen, Cheng Luo, 2013, BMC Systems Biology.

MicroRNA expression analysis reveals significant biological pathways in human prostate cancer

Jiajia Chen, Bairong Shen, Yifei Tang, 2011, 2011 IEEE International Conference on Systems Biology (ISB).

Identification and Functional Annotation of Genome-Wide ER-Regulated Genes in Breast Cancer Based on ChIP-Seq Data

Jiajia Chen, Bairong Shen, Zhonghua Xu, 2012, Comput. Math. Methods Medicine.

Computational analysis of microRNA function in heart development.

Jiajia Chen, Bairong Shen, Qing Jing, 2010, Acta biochimica et biophysica Sinica.

NGS-FC: A Next-Generation Sequencing Data Format Converter

Yang Yang, Jiajia Chen, Bairong Shen, 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Comparison of Prognostic MicroRNA Biomarkers in Blood and Tissues for Gastric Cancer

Jiajia Chen, Bairong Shen, Wenying Yan, 2016, Journal of Cancer.

Informatics for Precision Medicine and Healthcare.

Jiajia Chen, Bairong Shen, Yuxin Lin, 2017, Advances in experimental medicine and biology.

Identification of biomarker microRNAs for predicting the response of colorectal cancer to neoadjuvant chemoradiotherapy based on microRNA regulatory network

Jiajia Chen, Bairong Shen, Yuxin Lin, 2016, Oncotarget.

Bioinformatics for the Origin and Evolution of Viruses.

Bairong Shen, Jiajia Chen, Yuxin Zhang, 2022, Advances in Experimental Medicine and Biology.

Identifying novel glioma associated pathways based on integrated ‘omics’ data

Jiajia Chen, Bairong Shen, Guang Hu, 2012, 2012 IEEE 6th International Conference on Systems Biology (ISB).

Clear cell renal cell carcinoma associated microRNA expression signatures identified by an integrated bioinformatics analysis

Jiajia Chen, Bairong Shen, Wenying Yan, 2013, Journal of Translational Medicine.

ANCA: A Web Server for Amino Acid Networks Construction and Analysis

Bairong Shen, Chunjiang Yu, Wenying Yan, 2020, Frontiers in Molecular Biosciences.

Evaluation of plasma exosomal microRNAs as circulating biomarkers for progression and metastasis of gastric cancer

Jiajia Chen, Wenying Yan, Yuqi Chen, 2020, Clinical and translational medicine.

Biomarker microRNAs for prostate cancer metastasis: screened with a network vulnerability analysis model

Bairong Shen, Jiajia Chen, Zhandong Sun, 2018, Journal of Translational Medicine.

Genome-wide analysis of the transcription factor binding preference of human bi-directional promoters and functional annotation of related gene pairs

Jiajia Chen, Bairong Shen, Bingchuan Liu, 2011, BMC Systems Biology.

The landscape of emerging ceRNA crosstalks in colorectal cancer: Systems biological perspectives and translational applications

Bairong Shen, Jiajia Chen, Yuxin Lin, 2020, Clinical and translational medicine.

Present and Future

Bairong Shen, Jiajia Chen, Wenying Yan, 2022 .

Node-Weighted Amino Acid Network Strategy for Characterization and Identification of Protein Functional Residues

Jiajia Chen, Bairong Shen, Wenying Yan, 2018, J. Chem. Inf. Model..

Clear cell renal cell carcinoma associated microRNA expression signatures identified by an integrated bioinformatics analysis

Bairong Shen, Jiajia Chen, Daqin Zhang, 2013, Journal of Translational Medicine.

An integrative framework for identifying consistent microRNA expression signatures associated with clear cell renal cell carcinoma

Daqing Zhang, Wenyu Zhang, Jiajia Chen, 2012, 2012 IEEE 6th International Conference on Systems Biology (ISB).

Identifying novel prostate cancer associated pathways based on integrative microarray data analysis

Y. Wang, Bairong Shen, Hai-Yang Wang, 2011, Comput. Biol. Chem..

Computer-aided biomarker discovery for precision medicine: data resources, models and applications

Bairong Shen, Jiajia Chen, Yuxin Lin, 2019, Briefings Bioinform..

Computationally Comparative Analysis of CpG Islands in Human Bidirectional and Unidirectional Promoters

Jiajia Chen, Bairong Shen, Jiajia Chen, 2010, 2010 4th International Conference on Bioinformatics and Biomedical Engineering.