F. Guo

发表

Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition.

Hao Lin, H. Ding, F. Guo, 2008, Protein and peptide letters.

Identify Protein-coding Genes in the Genomes of Aeropyrum pernix K1 and Chlorobium tepidum TLS

Feng-Biao Guo, Yan Lin, F. Guo, 2009, Journal of biomolecular structure & dynamics.

Mutation Landscape of Base Substitutions, Duplications, and Deletions in the Representative Current Cholera Pandemic Strain

P. Woo, F. Guo, B. Kan, 2018, Genome biology and evolution.

PREDICTING SUBCHLOROPLAST LOCATIONS OF PROTEINS BASED ON THE GENERAL FORM OF CHOU'S PSEUDO AMINO ACID COMPOSITION: APPROACHED FROM OPTIMAL TRIPEPTIDE COMPOSITION

N. Rao, Wei Chen, Hao Lin, 2013 .

Prediction of subcellular location of mycobacterial protein using feature selection techniques

Hao Lin, H. Ding, F. Guo, 2010, Molecular Diversity.

Phylogenomic Analyses and Reclassification of Species within the Genus Tsukamurella: Insights to Species Definition in the Post-genomic Era

P. Woo, F. Guo, Ying Tang, 2016, Front. Microbiol..

GS-Finder: a program to find bacterial gene start sites with a self-training method.

Feng-Biao Guo, Chun-Ting Zhang, Hong-Yu Ou, 2004, The international journal of biochemistry & cell biology.

Prediction of genomic islands in seven human pathogens using the Z-Island method.

F. Guo, W. Wei, W Wei, 2011, Genetics and molecular research : GMR.

Re-Annotation of Protein-Coding Genes in 10 Complete Genomes of Neisseriaceae Family by Combining Similarity-Based and Composition-Based Methods

K. Yuen, F. Guo, L. Xiong, 2013, DNA research : an international journal for rapid publication of reports on genes and genomes.

Co-adaption of tRNA gene copy number and amino acid usage influences translation rates in three life domains

F. Guo, An-Ying Zhang, Wen Wei, 2017, bioRxiv.

The Distribution Patterns of Bases of Protein-coding Genes, Non-coding ORFs, and Intergenic Sequences in Pseudomonas aeruginosa PA01 Genome and its Implications

F. Guo, 2007, Journal of biomolecular structure & dynamics.

Essentiality drives the orientation bias of bacterial genes in a continuous manner

F. Guo, Wen-Xin Zheng, Cheng-Si Luo, 2015, Scientific Reports.

SMAL: A Resource of Spontaneous Mutation Accumulation Lines.

F. Guo, Jian Huang, Wen Wei, 2014, Molecular biology and evolution.

Transcriptional abundance is not the single force driving the evolution of bacterial proteins

Tao Zhang, F. Guo, Wen Wei, 2013, BMC Evolutionary Biology.

Comprehensive exploration of the enzymes catalysing oxygen‐involved reactions and COGs relevant to bacterial oxygen utilization

F. Guo, Jian Huang, Juanjuan Kang, 2018, Environmental microbiology.

Precise detection of Acrs in prokaryotes using only six features

F. Guo, Qing-Feng Wen, Chuan Dong, 2020, bioRxiv.

The GC Content as a Main Factor Shaping the Amino Acid Usage During Bacterial Evolution Process

F. Guo, Huan Wang, Wen Wei, 2018, Front. Microbiol..

Amino acid compositions contribute to the proteins’ evolution under the influence of their abundances and genomic GC content

Feng-Biao Guo, Meng-Ze Du, Wen Wei, 2018, Scientific Reports.

Re-prediction of protein-coding genes in the genome of Amsacta moorei entomopoxvirus.

Feng-Biao Guo, F. Guo, Xiu-Juan Yu, 2007, Journal of virological methods.

Re-Annotation of Protein-Coding Genes in the Genome of Saccharomyces cerevisiae Based on Support Vector Machines

F. Guo, P. Zhou, D. Lin, 2013, PloS one.

Geptop 2.0: Accurately Select Essential Genes from the List of Protein-Coding Genes in Prokaryotic Genomes.

F. Guo, Wen Wei, Qing-Feng Wen, 2021, Methods in molecular biology.

A novel proposal of a simplified bacterial gene set and the neo-construction of a general minimized metabolic network

F. Guo, Bin-Guang Ma, Yuan-Nong Ye, 2016, Scientific Reports.

CEG: a database of essential gene clusters

N. Rao, F. Guo, Jian Huang, 2013, BMC Genomics.

BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts

F. Guo, Jian Huang, Jianan Sun, 2021, Frontiers in Microbiology.

Zisland Explorer: detect genomic islands by combining homogeneity and heterogeneity properties

Ju Wang, Feng Gao, Feng-Biao Guo, 2016, Briefings Bioinform..

Anti-CRISPRdb v2.2: an online repository of anti-CRISPR proteins including information on inhibitory mechanisms, activities and neighbors of curated anti-CRISPR proteins

F. Guo, Xin Wang, Shi Chen, 2022, Database J. Biol. Databases Curation.

Statistical analyses of conserved features of genomic islands in bacteria.

F. Guo, W. Wei, Z-K Xia, 2014, Genetics and molecular research : GMR.

Predicting bacterial essential genes using only sequence composition information.

N. Rao, H. Ding, F. Guo, 2014, Genetics and molecular research : GMR.

T-G-A Deficiency Pattern in Protein-Coding Genes and Its Potential Reason

Z. Deng, F. Guo, Ling-Ling Chen, 2022, Frontiers in Microbiology.

EcoliGD: An Online Tool for Designing Escherichia coli Genome.

F. Guo, Zixin Deng, Hai-Xia Guo, 2022, ACS synthetic biology.

Biocomputional construction of a gene network under acid stress in Synechocystis sp. PCC 6803.

N. Rao, F. Guo, Ying Zhang, 2014, Research in microbiology.

Co-evolution of genomic islands and their bacterial hosts revealed through phylogenetic analyses of 17 groups of homologous genomic islands.

N. Rao, H. Ding, F. Guo, 2012, Genetics and molecular research : GMR.

Discovery of Drug Candidates for Specific Human Disease Based on Natural Products of Gut Microbes

F. Guo, Qing-Feng Wen, Chuan Dong, 2022, Frontiers in Microbiology.

ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes.

Feng-Biao Guo, Chun-Ting Zhang, Hong-Yu Ou, 2003, Nucleic acids research.

Separate base usages of genes located on the leading and lagging strands in Chlamydia muridarum revealed by the Z curve method

F. Guo, Xiu-Juan Yu, 2007, BMC Genomics.

Base frequencies at the second codon position of Vibrio cholerae genes connect with protein function.

F. Guo, Ju Wang, 2002, Biochemical and biophysical research communications.

Prediction of protein-coding small ORFs in multi-species using integrated sequence-derived features and the random forest model.

Jia-Feng Yu, F. Guo, Xianghua Dou, 2023, Methods.

[Strong strand specific composition bias-a genomic character of some obligate parasites or symbionts].

F. Guo, 2011, Yi chuan = Hereditas.

Strand-specific Composition Bias in Bacterial Genomes

F. Guo, L. Ning, 2011 .

Strong Strand Composition Bias in the Genome of Ehrlichia canis Revealed by Multiple Methods

F. Guo, Wen Wei, 2010, The open microbiology journal.

Amino acid compositions contribute to the proteins’ evolution under the influence of their abundances and genomic GC content

F. Guo, Wen Wei, Meng-Ze Du, 2018, Scientific Reports.

[Current status of theoretical studies on essential genes in microbes].

F. Guo, Yuan-Nong Ye, 2012, Yi chuan = Hereditas.

Universal Pattern and Diverse Strengths of Successive Synonymous Codon Bias in Three Domains of Life, Particularly Among Prokaryotic Genomes

F. Guo, Wen Wei, Yuan-Nong Ye, 2012, DNA research : an international journal for rapid publication of reports on genes and genomes.

CasPDB: an integrated and annotated database for Cas proteins from bacteria and archaea

Ang Chen, Bifang He, Jian Huang, 2019, Database J. Biol. Databases Curation.

CasLocusAnno: a web‐based server for annotating cas loci and their corresponding (sub)types

Yi-Zhou Gao, Feng-Biao Guo, Jian Huang, 2019, FEBS letters.

CasLocusAnno: a web-based server for annotating Cas loci and their corresponding (sub)types

Yi-Zhou Gao, Chuan Dong, Feng-Biao Guo, 2018, bioRxiv.

Geptop: A Gene Essentiality Prediction Tool for Sequenced Bacterial Genomes Based on Orthology and Phylogeny

Feng-Biao Guo, Yuan-Nong Ye, Lu-Wen Ning, 2013, PloS one.

CEG 2.0: an updated database of clusters of essential genes including eukaryotic organisms

N. Rao, F. Guo, Yuan-Nong Ye, 2020, Database J. Biol. Databases Curation.

Genomic Complexity Places Less Restrictions on the Evolution of Young Coexpression Networks than Protein–Protein Interactions

N. Rao, F. Guo, Wen Wei, 2016, Genome biology and evolution.

Comprehensive review of the identification of essential genes using computational methods: focusing on feature implementation and assessment

Chuan Dong, Feng-Biao Guo, Qing-Feng Wen, 2018, Briefings Bioinform..

MimoDB 2.0: a mimotope database and beyond

Ping Zhu, Jun Yang, Feng-Biao Guo, 2011, Nucleic Acids Res..

Codon Usages of Genes on Chromosome, and Surprisingly, Genes in Plasmid are Primarily Affected by Strand-specific Mutational Biases in Lawsonia intracellularis

F. Guo, Jianbing Yuan, 2009, DNA research : an international journal for rapid publication of reports on genes and genomes.

Identifying Bacterial Essential Genes Based on a Feature-Integrated Method

Yan Lin, Kai Xue, Yi-Zhou Gao, 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Analysis of the Relationship between Genomic GC Content and Patterns of Base Usage, Codon Usage and Amino Acid Usage in Prokaryotes: Similar GC Content Adopts Similar Compositional Frequencies Regardless of the Phylogenetic Lineages

F. Guo, L. Ning, Hui-Qi Zhou, 2014, PloS one.

Consistent Clustering Pattern of Prokaryotic Genes Based on Base Frequency at the Second Codon Position and its Association with Functional Category Preference

Z. Deng, F. Guo, Xin Wang, 2021, Interdisciplinary Sciences: Computational Life Sciences.

Gene recognition based on nucleotide distribution of ORFs in a hyper-thermophilic crenarchaeon, Aeropyrum pernix K1.

Feng-Biao Guo, Chun-Ting Zhang, F. Guo, 2004, DNA research : an international journal for rapid publication of reports on genes and genomes.

Anti-CRISPRdb: a comprehensive online resource for anti-CRISPR proteins

Ge-Fei Hao, Abraham A. Labena, Feng-Biao Guo, 2017, Nucleic Acids Res..

iRSpot-Pse6NC: Identifying recombination spots in Saccharomyces cerevisiae by incorporating hexamer composition into general PseKNC

Kuo-Chen Chou, Wei Chen, Hao Lin, 2018, International journal of biological sciences.

MimoDB: a New Repository for Mimotope Data Derived from Phage Display Technology

Feng-Biao Guo, Ping Dai, Hao Lin, 2010, Molecules.

A plot of G + C content against sequence length of 640 bacterial chromosomes shows the points are widely scattered in the upper triangular area

Hao Lin, F. Guo, Jian Huang, 2009, Chromosome Research.

ACFIS: a web server for fragment-based drug discovery

Feng-Xu Wu, Ge-Fei Hao, Feng-Biao Guo, 2016, Nucleic Acids Res..

An Approach for Predicting Essential Genes Using Multiple Homology Mapping and Machine Learning Algorithms

Abraham A. Labena, Chuan Dong, Feng-Biao Guo, 2016, BioMed research international.

Three computational tools for predicting bacterial essential genes.

Feng-Biao Guo, Yuan-Nong Ye, Lu-Wen Ning, 2015, Methods in molecular biology.

IFIM: a database of integrated fitness information for microbial genes

Feng-Biao Guo, Wen Wei, Dan Lin, 2014, Database J. Biol. Databases Curation.

CEG: a database of essential gene clusters

N. Rao, F. Guo, Jian Huang, 2013, BMC Genomics.

Identification and analysis of genomic islands in Burkholderia cenocepacia AU 1054 with emphasis on pathogenicity islands

P. Woo, F. Guo, L. Xiong, 2017, BMC Microbiology.

Geptop 2.0: An Updated, More Precise, and Faster Geptop Server for Identification of Prokaryotic Essential Genes

Yi-Zhou Gao, Chuan Dong, Feng-Biao Guo, 2019, Front. Microbiol..

Applications of four machine learning algorithms in identifying bacterial essential genes based on composition features

Feng-Biao Guo, Yan-Yan Deng, F. Guo, 2015, 2015 IEEE China Summit and International Conference on Signal and Information Processing (ChinaSIP).

Chromosome translocation and its consequence in the genome of Burkholderia cenocepacia AU-1054.

Hao Lin, F. Guo, Jian Huang, 2010, Biochemical and biophysical research communications.

Accurate prediction of human essential genes using only nucleotide composition and association information

Hao Luo, Feng-Biao Guo, Shuo Liu, 2016, bioRxiv.

Identify Golgi protein types with modified Mahalanobis discriminant algorithm and pseudo amino acid composition.

Hui Ding, Li Liu, Feng-Biao Guo, 2011, Protein and peptide letters.

ZCURVE_V: a new self-training system for recognizing protein-coding genes in viral and phage genomes

Feng-Biao Guo, Chun-Ting Zhang, F. Guo, 2006, BMC Bioinformatics.

Predicting bacteriophage proteins located in host cell with feature selection technique

Wei Chen, Hui Ding, Feng-Biao Guo, 2016, Comput. Biol. Medicine.

Prediction of Golgi-resident protein types by using feature selection technique

Jian Huang, Hui Ding, Feng-Biao Guo, 2013 .

SAROTUP: Scanner and Reporter of Target-Unrelated Peptides

Feng-Biao Guo, Hao Lin, Jian Huang, 2010, Journal of biomedicine & biotechnology.

BDB: biopanning data bank

Hui Ding, Peng Zhou, Feng-Biao Guo, 2015, Nucleic Acids Res..

Modified bagging of maximal information coefficient for genome-wide identification

Ling Yang, Dan Yang, Nini Rao, 2016, Int. J. Data Min. Bioinform..

Prediction of protein structural classes based on feature selection technique

Hui Ding, Feng-Biao Guo, Hao Lin, 2014, Interdisciplinary Sciences: Computational Life Sciences.

RIscoper: a tool for RNA-RNA interaction extraction from the literature

Dong Wang, Hao Xu, Yang Zhang, 2019, Bioinform..

Phd7faster: Predicting Clones Propagating Faster from the pH.D.-7 phage Display peptide Library

Peter A. C. 't Hoen, Feng-Biao Guo, Hao Lin, 2014, J. Bioinform. Comput. Biol..

Laribacter hongkongensis anaerobic adaptation mediated by arginine metabolism is controlled by the cooperation of FNR and ArgR

P. Woo, F. Guo, J. E. Hallsworth, 2017, Environmental microbiology.

Metabolic pathway databases and model repositories

Abraham A. Labena, Yi-Zhou Gao, Chuan Dong, 2018, Quantitative Biology.

SSER: Species specific essential reactions database

Abraham A. Labena, Feng-Biao Guo, Yuan-Nong Ye, 2017, BMC Systems Biology.

GMMAD: a comprehensive database of human gut microbial metabolite associations with diseases

F. Guo, Zixin Deng, Xia Kuang, 2023, BMC Genomics.

Multiple Factors Drive Replicating Strand Composition Bias in Bacterial Genomes

F. Guo, Yuan-Nong Ye, Z-K Xia, 2015, International journal of molecular sciences.

Replicating Strand Asymmetry in Bacterial and Eukaryotic Genomes

F. Guo, 2012, Current genomics.

Analysis of nucleotide distribution in the genome of Streptomyces coelicolor A3(2) using the Z curve method

Feng-Biao Guo, Chun-Ting Zhang, Hong-Yu Ou, 2003, FEBS letters.

Prediction of Genomic Islands in Three Bacterial Pathogens of Pneumonia

F. Guo, Wen Wei, 2012, International journal of molecular sciences.

Vgas: A Viral Genome Annotation System

Yi-Zhou Gao, Chuan Dong, Feng-Biao Guo, 2019, Front. Microbiol..

Combining pseudo dinucleotide composition with the Z curve method to improve the accuracy of predicting DNA elements: a case study in recombination spots.

Abraham A. Labena, Wei Chen, Hao Lin, 2016, Molecular bioSystems.