D. Durand

发表

Event inference in multidomain families with phylogenetic reconciliation

Maureen Stolzer, Katherine Siewert, Han Lai, 2015, BMC Bioinformatics.

Flexibility and constraint: Evolutionary remodeling of the sporulation initiation pathway in Firmicutes

M. Laub, D. Durand, N. Hiller, 2018, PLoS genetics.

Gene Cluster Statistics with Gene Families

Dannie Durand, Narayanan Raghupathy, D. Durand, 2009, Molecular biology and evolution.

Two Plus Two Does not Equal Three: Statistical Tests for Multiple Genome Comparison.

D. Durand, Rose Hoberman, N. Raghupathy, 2007 .

Robustness of birth-death and gain models for inferring evolutionary events

L. Wasserman, Maureen Stolzer, D. Durand, 2014, BMC Genomics.

Selection, periodicity and potential function for Highly Iterative Palindrome-1 (HIP1) in cyanobacterial genomes

Minli Xu, D. Durand, J. Lawrence, 2018, Nucleic acids research.

Improving Parallel I / O Performance through Scheduling Algorithms based on Randomized , Distributed Edge Coloring Algorithms

R. Jain, D. Durand, 1999 .

Family classification without domain chaining

D. Durand, Jacob M. Joseph, 2009, Bioinform..

P-POD, The Princeton Protein Orthology Database, as a Tool for Identifying Gene Function

D. Botstein, K. Dolinski, R. Oughtred, 2009 .

BIOINFORMATICS Family classiﬁcation without domain chaining

D. Durand, Jacob M. Joseph, 2009 .

Genetic Drift in Populations of Distorting Gene Complexes

W. Ewens, K. Ardlie, L. Silver, 2022 .

Distributed scheduling algorithms to improve the performance of parallel data transfers

Ravi Jain, Dannie Durand, David Tseytlin, 1994, CARN.

Dannie Durand, Nan Song, George B. Davis, 2008, PLoS Comput. Biol..

Domain Architecture Comparison for Multidomain Homology Identification

Dannie Durand, Nan Song, R. D. Sedgewick, 2007, J. Comput. Biol..

Domain Architecture in Homolog Identification

Dannie Durand, Nan Song, R. D. Sedgewick, 2006, Comparative Genomics.

Vertebrate evolution: doubling and shuffling with a full deck.

Dannie Durand, D. Durand, 2003, Trends in genetics : TIG.

Individual Gene Cluster Statistics in Noisy Maps

Dannie Durand, Narayanan Raghupathy, D. Durand, 2005, Comparative Genomics.

Tests for gene clustering

David Sankoff, Dannie Durand, D. Sankoff, 2002, RECOMB '02.

Two Plus Two Does not Equal Three: Statistical Tests for Multiple Genome Comparison

Dannie Durand, Rose Hoberman, Narayanan Raghupathy, 2008, APBC.

Diagnosing duplications--can it be done?

Dannie Durand, Rose Hoberman, D. Durand, 2006, Trends in genetics : TIG.

Event inference in multidomain families with phylogenetic reconciliation

Maureen Stolzer, Katherine Siewert, Han Lai, 2015, BMC Bioinformatics.

The Statistical Analysis of Spatially Clustered Genes under the Maximum Gap Criterion

David Sankoff, Dannie Durand, Rose Hoberman, 2005, J. Comput. Biol..

The Incompatible Desiderata of Gene Cluster Properties

Dannie Durand, Rose Hoberman, D. Durand, 2005, Comparative Genomics.

The Statistical Significance of Max-Gap Clusters

David Sankoff, Dannie Durand, Rose Hoberman, 2004, Comparative Genomics.

Robustness of birth-death and gain models for inferring evolutionary events

L. Wasserman, Maureen Stolzer, D. Durand, 2014, BMC Genomics.

NOTUNG: A Program for Dating Gene Duplications and Optimizing Gene Family Trees

Dannie Durand, Martin Farach-Colton, Kevin C. Chen, 2000, J. Comput. Biol..

Notung: dating gene duplications using gene family trees

Dannie Durand, Martin Farach-Colton, Kevin C. Chen, 2000, RECOMB '00.

Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees

Dannie Durand, Minli Xu, Han Lai, 2012, Bioinform..

Ten Years of Collaborative Progress in the Quest for Orthologs

Alex Warwick Vesztrocy, Natasha M. Glover, Adrian M. Altenhoff, 2021, Molecular biology and evolution.

Graph Theoretical Insights into Evolution of Multidomain Proteins

Dannie Durand, Teresa M. Przytycka, Nan Song, 2005, RECOMB.

Reconciliation with non-binary species trees.

Dannie Durand, Benjamin Vernot, Maureen Stolzer, 2008, Journal of computational biology : a journal of computational molecular cell biology.

Reconciliation with Non-Binary Species Trees

B Vernot, M Stolzer, A Goldman, 2007, J. Comput. Biol..

A hybrid micro-macroevolutionary approach to gene tree reconstruction.

Dannie Durand, Bjarni V. Halldórsson, Benjamin Vernot, 2006 .

A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction

Dannie Durand, Bjarni V. Halldórsson, Benjamin Vernot, 2005, RECOMB.

How old is my gene?

Dannie Durand, Katherine S Pollard, Maureen Stolzer, 2013, Trends in genetics : TIG.

A new look at tree models for multiple sequence alignment

Dannie Durand, D. Durand, 1998, Mathematical Support for Molecular Biology.

On the Design of Optimization Criteria for Multiple Sequence Alignment

Dannie Durand, Martin Farach, D. Durand, 1996 .

Notung 2.6 : A Manual

Benjamin Vernot, Maureen Stolzer, D. Durand, 2008 .

Xenolog classification

Dannie Durand, Patrick J. Ropp, Daniel Barker, 2016, Bioinform..

Genetic Drift in Populations of Ultraselfish Gene Complexes1

W. Ewens, K. Ardlie, L. Silver, 1999 .

Gene Acquisition by a Distinct Phyletic Group within Streptococcus pneumoniae Promotes Adhesion to the Ocular Epithelium

Maureen Stolzer, Han Lai, D. Durand, 2017, mSphere.

Impact of Memory Contention on Dynamic Scheduling on Numa Multiprocessors

Dannie Durand, William Jalby, Thierry Montaut, 1993, 1993 International Conference on Parallel Processing - ICPP'93.

Inferring Protein Function from Homology Using the Princeton Protein Orthology Database (P‐POD)

Kara Dolinski, Dannie Durand, Rose Oughtred, 2011, Current protocols in bioinformatics.

Human atlastin-3 is a constitutive ER membrane fusion catalyst

Maureen Stolzer, D. Durand, D. Crosby, 2023, The Journal of cell biology.

Applying randomized edge coloring algorithms to distributed communication: an experimental study

Ravi Jain, Dannie Durand, David Tseytlin, 1995, SPAA '95.

Parallel I/O scheduling using randomized, distributed edge coloring algorithms

Ravi Jain, Dannie Durand, David Tseytlin, 2003, J. Parallel Distributed Comput..

ISMB 2014 Proceedings Papers Committee

William Stafford Noble, Noah M. Daniels, D. Heckerman, 2014, Bioinformatics.

Supplemental Figures and Tables

G. Orphanides, W. Tong, Susanna-Assunta Sansone, 2020 .

Reconciliation with Non-Binary Species Trees

Benjamin Vernot, Maureen Stolzer, D. Durand, 2008, J. Comput. Biol..

Fast Heuristics for Resolving Weakly Supported Branches Using Duplication, Transfers, and Losses

Dannie Durand, Han Lai, Maureen Stolzer, 2017, RECOMB-CG.

Tests for gene clustering

D. Sankoff, D. Durand, 2002, RECOMB '02.

Event inference in multidomain families with phylogenetic reconciliation

Maureen Stolzer, Han Lai, D. Durand, 2015, BMC Bioinformatics.